Abscisic acid response element binding factor 1 is required for establishment of Arabidopsis seedlings during winter

Molecular Biology Reports

Volumn 38, Issue 8, 2011, Pages 5147-5159

  Sharma, Pitamber Dutt ^a   Singh, Neha ^a   Ahuja, Paramvir Singh ^a   Reddy, Thamalampudi Venkata ^a,b  

^a CSIR INSTITUTE OF HIMALAYAN BIORESOURCE TECHNOLOGY   (India)

^b ITC R and D Centre   (India)

Author keywords

Abscisic acid; Environmental adaptation; Natural cis antisense mRNA pair; Seedling establishment

Indexed keywords

ABSCISIC ACID; COMPLEMENTARY DNA;

3' UNTRANSLATED REGION; ABSCISIC ACID RESPONSE ELEMENT BINDING FACTOR 1 GENE; ARABIDOPSIS; ARTICLE; CONTROLLED STUDY; COTYLEDON; DNA SEQUENCE; GENE FUNCTION; GENE IDENTIFICATION; GENE LOCUS; GERMINATION; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PLANT GENE; PLANT GROWTH; PLANT LEAF; PLANT RESPONSE; PLANT ROOT; PLANT STRESS; PROMOTER REGION; SEED DEVELOPMENT; SEED DORMANCY; SEEDLING; SEEDLING ESTABLISHMENT; SEQUENCE ALIGNMENT; SPECIES COMPARISON; TRICHOME; WILD TYPE; WINTER;

3' UNTRANSLATED REGIONS; ABSCISIC ACID; ALLELES; ARABIDOPSIS; ARABIDOPSIS PROTEINS; BASIC-LEUCINE ZIPPER TRANSCRIPTION FACTORS; GENE EXPRESSION REGULATION, PLANT; GENES, PLANT; GENETIC LOCI; MUTATION; PHENOTYPE; PROTEIN BINDING; RESPONSE ELEMENTS; RNA, ANTISENSE; RNA, MESSENGER; SEASONS; SEED DORMANCY; SEEDLING; STRESS, PHYSIOLOGICAL;

ARABIDOPSIS;

EID: 84855246837     PISSN: 03014851     EISSN: 15734978     Source Type: Journal    
DOI: 10.1007/s11033-010-0664-3     Document Type: Article

References (46)

1. Finkelstein RR, Gampala SS, Rock CD (2002) Abscisic acid signaling in seeds and seedlings. Plant Cell 14:S15-S45 (Pubitemid 34609229)
2. Koornneef M, Hanhart CJ, Hilhorst HW, Karssen CM (1989) In vivo inhibition of seed development and reserve protein accumulation in recombinants of abscisic acid biosynthesis and responsiveness mutants in Arabidopsis thaliana. Plant Physiol 90(2):463-469
3. Giraudat J, Hauge BM, Valon C, Smalle J, Party F, Goodman HM (1992) Isolation of the Arabidopsis AB13 gene by positional cloning. Plant Cell 4(10):1251-1261
4. Finkelstein RR (1994) Mutations at two new Arabidopsis ABA responsive loci are similar to the abi3 mutations. Plant J 5: 765-771
5. Leung J, Met-lot S, Giraudat J (1997) The Arabidopsis abscisic acid-insensitive 2 (ABI2) and ABI1 genes encode homologous phosphatases 2C involved in abscisic acid signal transduction. Plant Cell 9(5):759-771 (Pubitemid 28104505)
6. Finkelstein RR, Lynch TJ (2000) The Arabidopsis abscisic acid response gene ABI5 encodes basic leucine zipper transcription factor. Plant Cell 12(4):599-609 (Pubitemid 30254875)
7. Shen Q, Ho THD (1995) Functional dissection of an abscisic acid (ABA)-inducible gene reveals two independent ABA-responsive complexes each containing a G-box and novel cis-acting element. Plant Cell 7(3):295-307
8. Busk PK, Pages M (1998) Regulation of abscisic acid-induced transcription. Plant Mol Biol 37(3):425-435 (Pubitemid 28209567)
9. Hattori T, Totsuka M, Hobo T, Kagaya Y, Yamamoto-Toyoda A (2002) Experimentally determined sequence requirement of ACGT-containing abscisic acid response element. Plant Cell Physiol 43(1):136-140 (Pubitemid 34152466)
10. Choi H, Hong J, Ha J, Kang J, Kim SY (2000) ABFs, a family of ABA-responsive element binding factors. J Biol Chem 275(3): 1723-1730 (Pubitemid 30060792)
11. Uno Y, Furihata T, Abe H, Yoshida R, Shinozaki K, Yamaguchi-Shinozaki K (2000) Arabidopsis basic leucine zipper transcription factors involved in an abscisic acid-dependent signal trans-duction pathway under drought and high-salinity conditions. Proc Natl Acad Sci USA 97(21):11632-11637
12. Fujita Y, Fujita M, Satoh R, Maruyama K, Parvey MM, Seki M, Hiratsu K, Ohme-Takagi M, Shinozaki K, Yamaguchi-Shinozaki K (2005) AREB1 is a transcription activator of novel ABRE-dependent ABA signaling that enhances drought stress tolerance in Arabidopsis. Plant Cell 17(12):3470-3488
13. Kim S, Kang J-Y, Cho DI, Park JH, Kim SY (2004) ABF2, an ABRE binding bZIP factor, is an essential component of glucose signaling and its over expression affects multiple stress tolerance. Plant J 40(1):75-87 (Pubitemid 39342595)
14. Choi H, Park HJ, Park JH, Kim S, Im MY, Seo HH, Kim YW, Hwang I, Kim SY (2005) Arabidopsis calcium-dependent protein kinase CPK32 interacts with ABF4, a transcriptional regulator of abscisic acid-responsive gene expression, and modulates its activity. Plant Physiol 139(4):1750-1761 (Pubitemid 43899815)
15. Fujii H, Verslues PE, Zhu JK (2007) Identification of two protein kinases required for abscisic acid regulation of seed germination, root growth, and gene expression in Arabidopsis. Plant Cell 19(2): 484-494
16. Zhu SY, Yu XC, Wang XJ, Zhao R, Li Y, Fan RC, Shang Y, Du SY, Wang XF, Wu FQ, Xu YH, Zhang XY, Zhang DP (2007) Two calcium-dependent protein kinases, CPK4 and CPK11, regulate abscisic acid signal transduction in Arabidopsis. Plant Cell 19(10):3019-3036 (Pubitemid 350276709)
17. KimS,ChoiHI, Ryu H-J, Park JH, KimMD, KimSY(2004) ARIA, an Arabidopsis arm repeat protein interacting with a transcriptional regulator of abscisic acid-responsive gene expression, is a novel abscisic acid signaling component. Plant Physiol 136(3): 3639-3648 (Pubitemid 41075802)
18. Lu C, Fedoroff N (2000) A mutation in the Arabidopsis HYL1 gene encoding a dsRNA binding protein affects responses to abscisic acid, auxin, and cytokinin. Plant Cell 12(12):2351-2366
19. Zhang JF, Yuan LJ, Shao Y, Du W, Yan DW, Lu YT (2008) The disturbance of small RNA pathways enhanced abscisic acid response and multiple stress responses in Arabidopsis. Plant Cell Environ 31(4):562-574 (Pubitemid 351388653)
20. Vaucheret H (2006) Post-transcriptional small RNA pathways in plants: mechanisms and regulations. Genes Dev 20(7):759-771
21. Sunkar R, Zhu JK (2004) Novel and stress-regulated micro-RNAs and other small RNAs from Arabidopsis. Plant Cell 16(8): 2001-2019 (Pubitemid 39059724)
22. Sunkar R, Kapoor A, Zhu JK (2006) Posttranscriptional induction of two Cu/Zn superoxide dismutase genes in Arabidopsis is mediated by downregulation of miR398 and important for oxi-dative stress tolerance. Plant Cell 18(8):2051-2065 (Pubitemid 44260196)
23. Reyes JL, Chua NH (2007) ABA induction of miR159 controls transcript level of two MYB factors during Arabidopsis seed germination. Plant J 49(4):592-606 (Pubitemid 46233079)
24. Borsani O, Zhu J, Verslues PE, Sunkar R, Zhu JK (2005) Endogenous siRNAs derived from a pair of natural cis-antisense transcripts regulate salt tolerance in Arabidopsis. Cell 123(7):1279-1291 (Pubitemid 41821785)
25. Wang XJ, Gaasterland T, Chua NH (2005) Genome-wide prediction and identification of cis-natural antisense transcripts in Arabidopsis thaliana. Genome Biol 6:R30
26. Shinozaki KY, Shinozaki K (2006) Transcriptional regulatory networks in cellular responses and tolerance to dehydration and cold stresses. Annu Rev Plant Biol 57:781-803 (Pubitemid 44061045)
27. Chinnusamy V, Ohta M, Kanrar S, Lee BH, Hong X, Agarwal M, Zhu JK (2003) ICE1: a regulator of cold-induced transcriptome and freezing tolerance in Arabidopsis. Genes Dev 17(8):1043-1054 (Pubitemid 36459456)
28. Yamaguchi-Shinozaki K, Shinozaki K (1994) A novel cis-acting element in an Arabidopsis gene is involved in responsiveness to drought, low temperature, or high-salt stress. Plant Cell 6(2):251-264
29. Chinnusamy V, Zhu J, Zhu JK (2006) Gene regulation during cold acclimation in plants. Physiol Plant 126:52-61
30. Bhardwaj PK, Ahuja PS, Kumar S (2010) Characterization of gene expression of QM from Caragana jubata, a plant species that grows under extreme cold. Mol Biol Rep 37(2):1003-1010
31. Ghawana S, Kumar S, Ahuja PS (2010) Early low-temperature responsive mitogen activated protein kinases RaMPK1 and RaMPK2 from Rheum australe D. Don respond differentially to diverse stresses. Mol Biol Rep 37(2):933-938
32. Zhu B, Xiong A-S, Peng R-H, Xu J, Jin X-F (2010) Over expression of ThpI from Choristoneura fumiferana enhances tolerance to cold in Arabidopsis. Mol Biol Rep 37(2):961-966
33. Mingeot D, Dauchot N, Cutsem PV (2009) Characterization of two cold induced dehydrin genes from Cichorium intybus L. Mol Biol Rep 36(7):1995-2001
34. Bechtold N, Ellis J, Pelletier G (1993) In planta Agrobacterium-mediated gene transfer by infiltration of adult Arabidopsis tha-liana plants. C R Acad Sci 316:1194-1199 (Pubitemid 23336519)
35. Jefferson RA (1987) Assaying chimeric genes in plants: the GUS gene fusion system. Plant Mol Biol Rep 5:387-405
36. Lee B, Henderson DA, Zhu JK (2005) The Arabidopsis cold responsive transcriptome and its regulation by ICE1. Plant Cell 17(11):3155-3175
37. Lescot M, Dehais P, Moreau Y, Van de Peer Y, Rouzé P, Rombauts S (2002) PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences. Nucleic Acids Res 30(1):325-327 (Pubitemid 34685468)
38. Xuo X-H, Deng K-Q, Wang J, Yu D-S, Zhao Q, Liu X-M (2010) Mutational analysis of Arabidopsis PP2CA2 involved in abscisic acid signal transduction. Mol Biol Rep 37(2):763-769
39. Zimmermann P, Hirsch-Hoffmann M, Hennig L, Gruissem W (2004) Genevestigator. Arabidopsis microarray database and analysis toolbox. Plant Physiol 136(1):2621-2632 (Pubitemid 41071302)
40. Jakoby M, Droge-Laser W, Vicente-Carbajosa J, Tiedemann J, Parcy TKF (2002) bZIP transcription factors in Arabidopsis. Trends Plant Sci 7(3):106-111 (Pubitemid 36726435)
41. Kang J-Y, Choi H-I, Im M-Y, Kim SY (2002) Arabidopsis basic leucine zipper proteins that mediate stress-responsive abscisic acid signaling. Plant Cell 14(2):343-357
42. Kryvych S, Nikiforova V, Herzog M, Perazza D, Fisahn J (2008) Gene expression profiling of the different stages of Arabidopsis thaliana trichome development on the single cell level. Plant Physiol Biochem 46(2):160-173
43. Finkelstein RR, Gampala SS, Lynch TJ, Thomas TL, Rock CD (2005) Redundant and distinct functions of the ABA response loci ABA-insensitive (ABI)5 and ABRE-binding factor (ABF)3. Plant Mol Biol 59(2):253-267 (Pubitemid 41500488)
44. Page DR, Grossniklaus U (2002) The art and design of genetic screens: Arabidopsis thaliana. Nat Rev Genet 3(2):124-136 (Pubitemid 34506596)
45. Dong CH, Agarwal M, Zhang Y, Xie Q, Zhu JK (2006) The negative regulator of plant cold responses, HOS1, is a RING E3 ligase that mediates the ubiquitination and degradation of ICE1. Proc Natl Acad Sci USA 103(21):8281-8286 (Pubitemid 43801089)
46. Jen C-H, Michalopoulos I, Westhead DR, Meyer P (2005) Natural antisense transcripts with coding capacity in Arabidopsis may have a regulatory role that is not linked to double stranded RNA degradation. Genome Biol 6:R5