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Volumn 25, Issue 11, 2011, Pages 1007-1017

Modeling the pharmacodynamics of passive membrane permeability

Author keywords

Homogenous solubility model; Implicit solvent; MINTA; Molecular mechanics; Passive membrane permeability

Indexed keywords

CHLORINE COMPOUNDS; CONFORMATIONS; FREE ENERGY; MOLECULAR MECHANICS; MOLECULAR MODELING; MOLECULES; SOLVATION;

EID: 84855207456     PISSN: 0920654X     EISSN: 15734951     Source Type: Journal    
DOI: 10.1007/s10822-011-9480-7     Document Type: Article
Times cited : (19)

References (28)
  • 1
    • 77949606364 scopus 로고    scopus 로고
    • The skin's barrier
    • 1:STN:280:DC%2BD1MjlsV2jtQ%3D%3D
    • JM Jensen E Proksch 2009 The skin's barrier G Ital Dermatol Venereol 144 6 689 700 1:STN:280:DC%2BD1MjlsV2jtQ%3D%3D
    • (2009) G Ital Dermatol Venereol , vol.144 , Issue.6 , pp. 689-700
    • Jensen, J.M.1    Proksch, E.2
  • 2
    • 0036940766 scopus 로고    scopus 로고
    • Pulmonary drug delivery systems: Recent developments and prospects
    • DOI 10.1615/CritRevTherDrugCarrierSyst.v19.i45.40
    • HM Courrier N Butz TF Vandamme 2002 Pulmonary drug delivery systems: recent developments and prospects Crit Rev Ther Drug Carrier Syst 19 4-5 425 498 10.1615/CritRevTherDrugCarrierSyst.v19.i45.40 1:CAS:528:DC%2BD3sXislWitLY%3D (Pubitemid 36314479)
    • (2002) Critical Reviews in Therapeutic Drug Carrier Systems , vol.19 , Issue.4-5 , pp. 425-498
    • Courrier, H.M.1    Butz, N.2    Vandamme, Th.F.3
  • 4
    • 45949101019 scopus 로고    scopus 로고
    • Prediction of oral drug absorption in humans - From cultured cell lines and experimental animals
    • DOI 10.1517/17425255.4.5.581
    • KC Cheng C Li AS Uss 2008 Prediction of oral drug absorption in humans-from cultured cell lines and experimental animals Expert Opin Drug Metab Toxicol 4 5 581 590 10.1517/17425255.4.5.581 10.1517/17425255.4.5.581 1:CAS:528:DC%2BD1cXmtVWrsbY%3D (Pubitemid 351890740)
    • (2008) Expert Opinion on Drug Metabolism and Toxicology , vol.4 , Issue.5 , pp. 581-590
    • Cheng, K.-C.1    Li, C.2    Uss, A.S.3
  • 5
    • 33644895842 scopus 로고    scopus 로고
    • The rise of PAMPA
    • 10.1517/17425255.1.2.325 10.1517/17425255.1.2.325 1:CAS:528: DC%2BD2MXhtVKltLfL
    • A Avdeef 2005 The rise of PAMPA Expert Opin Drug Metab Toxicol 1 2 325 342 10.1517/17425255.1.2.325 10.1517/17425255.1.2.325 1:CAS:528: DC%2BD2MXhtVKltLfL
    • (2005) Expert Opin Drug Metab Toxicol , vol.1 , Issue.2 , pp. 325-342
    • Avdeef, A.1
  • 6
    • 0025804183 scopus 로고
    • Correlation between oral drug absorption in humans and apparent drug permeability coefficients in human intestinal epithelial (Caco-2) cells
    • 10.1016/0006-291X(91)91647-U 1:CAS:528:DyaK3MXhslOrt7c%3D
    • P Artursson J Karlsson 1991 Correlation between oral drug absorption in humans and apparent drug permeability coefficients in human intestinal epithelial (Caco-2) cells Biochem Biophys Res Commun 175 3 880 885 10.1016/0006-291X(91)91647-U 1:CAS:528:DyaK3MXhslOrt7c%3D
    • (1991) Biochem Biophys Res Commun , vol.175 , Issue.3 , pp. 880-885
    • Artursson, P.1    Karlsson, J.2
  • 8
    • 33751158845 scopus 로고
    • Simulation of water transport through a lipid membrane
    • 10.1021/j100066a040 1:CAS:528:DyaK2cXitlylur4%3D
    • SJ Marrink HJC Berendsen 1994 Simulation of water transport through a lipid membrane J Phys Chem 98 4155 4168 10.1021/j100066a040 1:CAS:528: DyaK2cXitlylur4%3D
    • (1994) J Phys Chem , vol.98 , pp. 4155-4168
    • Marrink, S.J.1    Berendsen, H.J.C.2
  • 9
    • 0030264744 scopus 로고    scopus 로고
    • Permeation process of small molecules across lipid membranes studied by molecular dynamics simulations
    • SJ Marrink HJC Berendsen 1996 Permeation process of small molecules across lipid membranes studied by molecular dynamics simulations J Phys Chem 100 41 16729 16738 10.1021/jp952956f 1:CAS:528:DyaK28Xls12murs%3D (Pubitemid 126788021)
    • (1996) Journal of Physical Chemistry , vol.100 , Issue.41 , pp. 16729-16738
    • Marrink, S.J.1    Berendsen, H.J.C.2
  • 10
    • 72449191263 scopus 로고    scopus 로고
    • In silico prediction of human oral absorption based on QSAR analyses of PAMPA permeability
    • 10.1002/cbdv.200900112 10.1002/cbdv.200900112 1:CAS:528: DC%2BD1MXhsFSrtLzP
    • M Akamatsu M Fujikawa K Nakao R Shimizu 2009 In silico prediction of human oral absorption based on QSAR analyses of PAMPA permeability Chem Biodivers 6 11 1845 1866 10.1002/cbdv.200900112 10.1002/cbdv.200900112 1:CAS:528:DC%2BD1MXhsFSrtLzP
    • (2009) Chem Biodivers , vol.6 , Issue.11 , pp. 1845-1866
    • Akamatsu, M.1    Fujikawa, M.2    Nakao, K.3    Shimizu, R.4
  • 11
    • 33750482579 scopus 로고    scopus 로고
    • Conformational flexibility, internal hydrogen bonding, and passive membrane permeability: Successful in silico prediction of the relative permeabilities of cyclic peptides
    • DOI 10.1021/ja063076p
    • T Rezai JE Bock MV Zhou C Kalyanaraman RS Lokey MP Jacobson 2006 Conformational flexibility, internal hydrogen bonding, and passive membrane permeability: successful in silico prediction of the relative permeabilities of cyclic peptides J Am Chem Soc 128 43 14073 14080 10.1021/ja063076p 10.1021/ja063076p 1:CAS:528:DC%2BD28XhtVCmur3I (Pubitemid 44657500)
    • (2006) Journal of the American Chemical Society , vol.128 , Issue.43 , pp. 14073-14080
    • Rezai, T.1    Bock, J.E.2    Zhou, M.V.3    Kalyanaraman, C.4    Lokey, R.S.5    Jacobson, M.P.6
  • 12
    • 0032168937 scopus 로고    scopus 로고
    • The barrier domain for solute permeation varies with lipid bilayer phase structure
    • DOI 10.1007/s002329900422
    • T Xiang Y Xu BD Anderson 1998 The barrier domain for solute permeation varies with lipid bilayer phase structure J Membr Biol 165 1 77 90 10.1007/s002329900422 1:CAS:528:DyaK1cXlsFOnt70%3D (Pubitemid 28417667)
    • (1998) Journal of Membrane Biology , vol.165 , Issue.1 , pp. 77-90
    • Xiang, T.-X.1    Xu, Y.-H.2    Anderson, B.D.3
  • 13
    • 37749022819 scopus 로고    scopus 로고
    • An atomistic model of passive membrane permeability: Application to a series of FDA approved drugs
    • 10.1007/s10822-007-9141-z 10.1007/s10822-007-9141-z 1:CAS:528: DC%2BD2sXhsVKrtbzI
    • C Kalyanaraman MP Jacobson 2007 An atomistic model of passive membrane permeability: application to a series of FDA approved drugs J Comput Aided Mol Des 21 12 675 679 10.1007/s10822-007-9141-z 10.1007/s10822-007-9141-z 1:CAS:528:DC%2BD2sXhsVKrtbzI
    • (2007) J Comput Aided Mol des , vol.21 , Issue.12 , pp. 675-679
    • Kalyanaraman, C.1    Jacobson, M.P.2
  • 14
    • 84855190796 scopus 로고    scopus 로고
    • version 3.2, Schrodinger, LLC, New York, NY
    • QikProp, version 3.2, Schrodinger, LLC, New York, NY (2009)
    • (2009) QikProp
  • 15
    • 0032968133 scopus 로고    scopus 로고
    • Implicit solvent models
    • DOI 10.1016/S0301-4622(98)00226-9, PII S0301462298002269
    • B Roux T Simonson 1999 Implicit solvent models Biophys Chem 78 1-2 1 20 10.1016/S0301-4622(98)00226-9 1:CAS:528:DyaK1MXivF2jur8%3D (Pubitemid 29206654)
    • (1999) Biophysical Chemistry , vol.78 , Issue.1-2 , pp. 1-20
    • Roux, B.1    Simonson, T.2
  • 16
    • 0033654297 scopus 로고    scopus 로고
    • Generalized born models of macromolecular solvation effects
    • 10.1146/annurev.physchem.51.1.129 10.1146/annurev.physchem.51.1.129 1:CAS:528:DC%2BD3cXotlWktrc%3D
    • D Bashford DA Case 2000 Generalized born models of macromolecular solvation effects Annu Rev Phys Chem 51 129 152 10.1146/annurev.physchem.51.1. 129 10.1146/annurev.physchem.51.1.129 1:CAS:528:DC%2BD3cXotlWktrc%3D
    • (2000) Annu Rev Phys Chem , vol.51 , pp. 129-152
    • Bashford, D.1    Case, D.A.2
  • 17
    • 5644287368 scopus 로고    scopus 로고
    • Free energy, entropy, and induced fit in host-guest recognition: Calculations with the second-generation mining minima algorithm
    • CE Chang MK Gilson 2004 Free energy, entropy, and induced fit in host-guest recognition: calculations with the second-generation mining minima algorithm J Am Chem Soc 126 40 13156 13164 10.1021/ja047115d 10.1021/ja047115d 1:CAS:528:DC%2BD2cXns1Kmtbc%3D (Pubitemid 39372346)
    • (2004) Journal of the American Chemical Society , vol.126 , Issue.40 , pp. 13156-13164
    • Chang, C.-E.1    Gilson, M.K.2
  • 19
    • 0031079364 scopus 로고    scopus 로고
    • "Mining minima": Direct computation of conformational free energy
    • MS Head JA Given MK Gilson 1997 "Mining Minima": direct computation of conformational free energy J Phys Chem A 101 1609 1618 10.1021/jp963817g 1:CAS:528:DyaK2sXotVGrtw%3D%3D (Pubitemid 127619859)
    • (1997) Journal of Physical Chemistry A , vol.101 , Issue.8 , pp. 1609-1618
    • Head, M.S.1    Given, J.A.2    Gilson, M.K.3
  • 20
    • 0030694573 scopus 로고    scopus 로고
    • Evaluation of the molecular configuration integral in all degrees of freedom for the direct calculation of binding free energies: Application to the enantioselective binding of amino acid derivatives to synthetic host molecules
    • DOI 10.1021/ja971573n
    • I Kolossvary 1997 Evaluation of the molecular configuration integral in all degrees of freedom for the direct calculation of binding free energies: application to the enantioselective binding of amino acid derivatives to synthetic host molecules J Am Chem Soc 119 10233 10234 10.1021/ja971573n 1:CAS:528:DyaK2sXms1Gjur0%3D (Pubitemid 27478817)
    • (1997) Journal of the American Chemical Society , vol.119 , Issue.42 , pp. 10233-10234
    • Kolossvary, I.1
  • 21
    • 0037165453 scopus 로고    scopus 로고
    • Coordinate systems and the calculation of molecular properties
    • DOI 10.1021/jp0135407
    • MJ Potter MK Gilson 2002 Coordinate systems and the calculation of molecular properties J Phys Chem A 106 563 566 10.1021/jp0135407 1:CAS:528:DC%2BD3MXovF2qsL4%3D (Pubitemid 35264055)
    • (2002) Journal of Physical Chemistry A , vol.106 , Issue.3 , pp. 563-566
    • Potter, M.J.1    Gilson, M.K.2
  • 22
    • 34247369372 scopus 로고    scopus 로고
    • QSAR study on permeability of hydrophobic compounds with artificial membranes
    • DOI 10.1016/j.bmc.2007.03.040, PII S0968089607002386
    • M Fujikawa K Nakao R Shimizu M Akamatsu 2007 QSAR study on permeability of hydrophobic compounds with artificial membranes Biorganic Med Chem 15 3756 3767 10.1016/j.bmc.2007.03.040 1:CAS:528:DC%2BD2sXkslCitL8%3D (Pubitemid 46635142)
    • (2007) Bioorganic and Medicinal Chemistry , vol.15 , Issue.11 , pp. 3756-3767
    • Fujikawa, M.1    Nakao, K.2    Shimizu, R.3    Akamatsu, M.4
  • 23
    • 84855205915 scopus 로고    scopus 로고
    • version 9.8, Schrodinger, LLC, New York, NY
    • MacroModel, version 9.8, Schrodinger, LLC, New York, NY (2010)
    • (2010) MacroModel
  • 24
    • 84855195174 scopus 로고    scopus 로고
    • version 9.0, Schrodinger, LLC, New York, NY
    • Maestro, version 9.0, Schrodinger, LLC, New York, NY (2009)
    • (2009) Maestro
  • 25
    • 0031910020 scopus 로고    scopus 로고
    • Locally accessible conformations of proteins: Multiple molecular dynamics simulations of crambin
    • LS Caves JD Evanseck M Karplus 1998 Locally accessible conformations of proteins: multiple molecular dynamics simulations of crambin Protein Sci 7 3 649 666 10.1002/pro.5560070314 1:CAS:528:DyaK1cXhvV2lu7k%3D (Pubitemid 28130887)
    • (1998) Protein Science , vol.7 , Issue.3 , pp. 649-666
    • Caves, L.S.D.1    Evanseck, J.D.2    Karplus, M.3
  • 26
    • 47149107224 scopus 로고    scopus 로고
    • Molecular simulation of multistate peptide dynamics: A comparison between microsecond timescale sampling and multiple shorter trajectories
    • 10.1002/jcc.20935
    • L Monticelli EJ Sorin DP Tieleman VS Pande G Colombo 2008 Molecular simulation of multistate peptide dynamics: a comparison between microsecond timescale sampling and multiple shorter trajectories J Comput Chem 29 1699 1865 10.1002/jcc.20935
    • (2008) J Comput Chem , vol.29 , pp. 1699-1865
    • Monticelli, L.1    Sorin, E.J.2    Tieleman, D.P.3    Pande, V.S.4    Colombo, G.5
  • 27
    • 84875379930 scopus 로고    scopus 로고
    • version 7.11.0. Natick, The MathWorks Inc., Massachusetts
    • MATLAB version 7.11.0. Natick, The MathWorks Inc., Massachusetts (2010)
    • (2010) MATLAB
  • 28
    • 38949141177 scopus 로고    scopus 로고
    • Review: Continuum molecular electrostatics, salt effects, and counterion binding - A review of the Poisson-Boltzmann theory and its modifications
    • DOI 10.1002/bip.20877
    • P Grochowski J Trylska 2008 Continuum molecular electrostatics, salt effects, and counterion binding-a review of the Poisson-Boltzmann theory and its modifications Biopolymers 89 2 93 113 10.1002/bip.20877 10.1002/bip.20877 1:CAS:528:DC%2BD1cXht1Ont7k%3D (Pubitemid 351211641)
    • (2008) Biopolymers , vol.89 , Issue.2 , pp. 93-113
    • Grochowski, P.1    Trylska, J.2


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