-
1
-
-
45349086923
-
Global mapping of DNA methylation in mouse promoters reveals epigenetic reprogramming of pluripotency genes
-
Farthing C.R., Ficz G., Ng R.K., Chan C.F., et al. Global mapping of DNA methylation in mouse promoters reveals epigenetic reprogramming of pluripotency genes. PLoS Genet. 2008, 4:e1000116.
-
(2008)
PLoS Genet.
, vol.4
-
-
Farthing, C.R.1
Ficz, G.2
Ng, R.K.3
Chan, C.F.4
-
2
-
-
33751534259
-
The constant variation: DNA methylation changes during preimplantation development
-
Aranyi T., Paldi A. The constant variation: DNA methylation changes during preimplantation development. FEBS Lett. 2006, 580:6521-6526.
-
(2006)
FEBS Lett.
, vol.580
, pp. 6521-6526
-
-
Aranyi, T.1
Paldi, A.2
-
3
-
-
67949092871
-
High-throughput sequence-based epigenomic analysis of Alu repeats in human cerebellum
-
Xie H., Wang M., Bonaldo Mde F., et al. High-throughput sequence-based epigenomic analysis of Alu repeats in human cerebellum. Nucleic Acids Res. 2009, 37:4331-4340.
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 4331-4340
-
-
Xie, H.1
Wang, M.2
Bonaldo Mde, F.3
-
4
-
-
75649114257
-
CpG_MI: a novel approach for identifying functional CpG islands in mammalian genomes
-
Su J., Zhang Y., Lv J., et al. CpG_MI: a novel approach for identifying functional CpG islands in mammalian genomes. Nucleic Acids Res. 2010, 38:e6.
-
(2010)
Nucleic Acids Res.
, vol.38
-
-
Su, J.1
Zhang, Y.2
Lv, J.3
-
5
-
-
70349318211
-
The impact of retrotransposons on human genome evolution
-
Cordaux R., Batzer M.A. The impact of retrotransposons on human genome evolution. Nat. Rev. Genet. 2009, 10:691-703.
-
(2009)
Nat. Rev. Genet.
, vol.10
, pp. 691-703
-
-
Cordaux, R.1
Batzer, M.A.2
-
6
-
-
0024650990
-
The distribution of interspersed repetitive DNA sequences in the human genome
-
Moyzis R.K., Torney D.C., Meyne J., et al. The distribution of interspersed repetitive DNA sequences in the human genome. Genomics 1989, 4:273-289.
-
(1989)
Genomics
, vol.4
, pp. 273-289
-
-
Moyzis, R.K.1
Torney, D.C.2
Meyne, J.3
-
7
-
-
34548705374
-
Role of the Dnmt3 family in de novo methylation of imprinted and repetitive sequences during male germ cell development in the mouse
-
Kato Y., Kaneda M., Hata K., et al. Role of the Dnmt3 family in de novo methylation of imprinted and repetitive sequences during male germ cell development in the mouse. Hum. Mol. Genet. 2007, 16:2272-2280.
-
(2007)
Hum. Mol. Genet.
, vol.16
, pp. 2272-2280
-
-
Kato, Y.1
Kaneda, M.2
Hata, K.3
-
8
-
-
77957937011
-
Quantitative comparison of genome-wide DNA methylation mapping technologies
-
Bock C., Tomazou E.M., Brinkman A.B., et al. Quantitative comparison of genome-wide DNA methylation mapping technologies. Nat. Biotechnol. 2010, 28:1106-1114.
-
(2010)
Nat. Biotechnol.
, vol.28
, pp. 1106-1114
-
-
Bock, C.1
Tomazou, E.M.2
Brinkman, A.B.3
-
9
-
-
0032878301
-
A conserved nuclear element with a role in mammalian gene regulation
-
Donnelly S.R., Hawkins T.E., Moss S.E. A conserved nuclear element with a role in mammalian gene regulation. Hum. Mol. Genet. 1999, 8:1723-1728.
-
(1999)
Hum. Mol. Genet.
, vol.8
, pp. 1723-1728
-
-
Donnelly, S.R.1
Hawkins, T.E.2
Moss, S.E.3
-
12
-
-
67650067284
-
Changes in DNA methylation of tandem DNA repeats are different from interspersed repeats in cancer
-
Choi S.H., Worswick S., Byun H.M., et al. Changes in DNA methylation of tandem DNA repeats are different from interspersed repeats in cancer. Int. J. Cancer 2009, 125:723-729.
-
(2009)
Int. J. Cancer
, vol.125
, pp. 723-729
-
-
Choi, S.H.1
Worswick, S.2
Byun, H.M.3
-
13
-
-
77954671615
-
Repetitive element DNA methylation and circulating endothelial and inflammation markers in the VA normative aging study
-
Baccarelli A., Tarantini L., Wright R.O., et al. Repetitive element DNA methylation and circulating endothelial and inflammation markers in the VA normative aging study. Epigenetics 2010, 5.
-
(2010)
Epigenetics
, vol.5
-
-
Baccarelli, A.1
Tarantini, L.2
Wright, R.O.3
-
14
-
-
0037710466
-
Methylation dynamics of repetitive DNA elements in the mouse germ cell lineage
-
Lees-Murdock D.J., De Felici M., Walsh C.P. Methylation dynamics of repetitive DNA elements in the mouse germ cell lineage. Genomics 2003, 82:230-237.
-
(2003)
Genomics
, vol.82
, pp. 230-237
-
-
Lees-Murdock, D.J.1
De Felici, M.2
Walsh, C.P.3
-
15
-
-
34547476585
-
Global, comparative analysis of tissue-specific promoter CpG methylation
-
Schilling E., Rehli M. Global, comparative analysis of tissue-specific promoter CpG methylation. Genomics 2007, 90:314-323.
-
(2007)
Genomics
, vol.90
, pp. 314-323
-
-
Schilling, E.1
Rehli, M.2
-
16
-
-
58149492765
-
Differential methylation status of imprinted genes in nuclear transfer derived ES (NT-ES) cells
-
Chang G., Liu S., Wang F., et al. Differential methylation status of imprinted genes in nuclear transfer derived ES (NT-ES) cells. Genomics 2009, 93:112-119.
-
(2009)
Genomics
, vol.93
, pp. 112-119
-
-
Chang, G.1
Liu, S.2
Wang, F.3
-
17
-
-
29244490041
-
Analysis of repetitive element DNA methylation by MethyLight
-
Weisenberger D.J., Campan M., Long T.I., et al. Analysis of repetitive element DNA methylation by MethyLight. Nucleic Acids Res. 2005, 33:6823-6836.
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 6823-6836
-
-
Weisenberger, D.J.1
Campan, M.2
Long, T.I.3
-
18
-
-
49649125042
-
Genome-scale DNA methylation maps of pluripotent and differentiated cells
-
Meissner A., Mikkelsen T.S., Gu H., et al. Genome-scale DNA methylation maps of pluripotent and differentiated cells. Nature 2008, 454:766-770.
-
(2008)
Nature
, vol.454
, pp. 766-770
-
-
Meissner, A.1
Mikkelsen, T.S.2
Gu, H.3
-
19
-
-
64349091471
-
Targeted and genome-scale strategies reveal gene-body methylation signatures in human cells
-
Ball M.P., Li J.B., Gao Y., et al. Targeted and genome-scale strategies reveal gene-body methylation signatures in human cells. Nat. Biotechnol. 2009, 27:361-368.
-
(2009)
Nat. Biotechnol.
, vol.27
, pp. 361-368
-
-
Ball, M.P.1
Li, J.B.2
Gao, Y.3
-
20
-
-
70450217879
-
Human DNA methylomes at base resolution show widespread epigenomic differences
-
Lister R., Pelizzola M., Dowen R.H., et al. Human DNA methylomes at base resolution show widespread epigenomic differences. Nature 2009, 462:315-322.
-
(2009)
Nature
, vol.462
, pp. 315-322
-
-
Lister, R.1
Pelizzola, M.2
Dowen, R.H.3
-
21
-
-
79959797177
-
Tissue-specific demethylation in CpG-poor promoters during cellular differentiation
-
Nagae G., Isagawa T., Shiraki N., et al. Tissue-specific demethylation in CpG-poor promoters during cellular differentiation. Hum. Mol. Genet. 2011, 20:2710-2721.
-
(2011)
Hum. Mol. Genet.
, vol.20
, pp. 2710-2721
-
-
Nagae, G.1
Isagawa, T.2
Shiraki, N.3
-
22
-
-
61849085358
-
The dynamic DNA methylomes of double-stranded DNA viruses associated with human cancer
-
Fernandez A.F., Rosales C., Lopez-Nieva P., et al. The dynamic DNA methylomes of double-stranded DNA viruses associated with human cancer. Genome Res. 2009, 19:438-451.
-
(2009)
Genome Res.
, vol.19
, pp. 438-451
-
-
Fernandez, A.F.1
Rosales, C.2
Lopez-Nieva, P.3
-
24
-
-
0031867074
-
Short repetitive sequences in green algal mitochondrial genomes: potential roles in mitochondrial genome evolution
-
Nedelcu A.M., Lee R.W. Short repetitive sequences in green algal mitochondrial genomes: potential roles in mitochondrial genome evolution. Mol. Biol. Evol. 1998, 15:690-701.
-
(1998)
Mol. Biol. Evol.
, vol.15
, pp. 690-701
-
-
Nedelcu, A.M.1
Lee, R.W.2
-
25
-
-
69449085661
-
Differential repetitive DNA methylation in multiple myeloma molecular subgroups
-
Bollati V., Fabris S., Pegoraro V., et al. Differential repetitive DNA methylation in multiple myeloma molecular subgroups. Carcinogenesis 2009, 30:1330-1335.
-
(2009)
Carcinogenesis
, vol.30
, pp. 1330-1335
-
-
Bollati, V.1
Fabris, S.2
Pegoraro, V.3
-
27
-
-
38349135680
-
High-resolution mapping of DNA hypermethylation and hypomethylation in lung cancer
-
Rauch T.A., Zhong X., Wu X., et al. High-resolution mapping of DNA hypermethylation and hypomethylation in lung cancer. Proc. Natl. Acad. Sci. U. S. A. 2008, 105:252-257.
-
(2008)
Proc. Natl. Acad. Sci. U. S. A.
, vol.105
, pp. 252-257
-
-
Rauch, T.A.1
Zhong, X.2
Wu, X.3
-
28
-
-
67149086996
-
Extensive demethylation of repetitive elements during seed development underlies gene imprinting
-
Gehring M., Bubb K.L., Henikoff S. Extensive demethylation of repetitive elements during seed development underlies gene imprinting. Science 2009, 324:1447-1451.
-
(2009)
Science
, vol.324
, pp. 1447-1451
-
-
Gehring, M.1
Bubb, K.L.2
Henikoff, S.3
-
29
-
-
67349255210
-
CpG islands-'a rough guide'
-
Illingworth R.S., Bird A.P. CpG islands-'a rough guide'. FEBS Lett. 2009, 583:1713-1720.
-
(2009)
FEBS Lett.
, vol.583
, pp. 1713-1720
-
-
Illingworth, R.S.1
Bird, A.P.2
-
30
-
-
0036144048
-
DNA methylation patterns and epigenetic memory
-
Bird A. DNA methylation patterns and epigenetic memory. Genes Dev. 2002, 16:6-21.
-
(2002)
Genes Dev.
, vol.16
, pp. 6-21
-
-
Bird, A.1
-
31
-
-
77954224132
-
-
Chromatin and sequence features that define the fine and gross structure of genomic methylation patterns, Genome Res.
-
J.R. Edwards, A.H. O'Donnell, R.A. Rollins et al. Chromatin and sequence features that define the fine and gross structure of genomic methylation patterns, Genome Res, 20 972-980.
-
, vol.20
, pp. 972-980
-
-
Edwards, J.R.1
O'Donnell, A.H.2
Rollins, R.A.3
-
32
-
-
0035999991
-
CpGProD: identifying CpG islands associated with transcription start sites in large genomic mammalian sequences
-
Ponger L., Mouchiroud D. CpGProD: identifying CpG islands associated with transcription start sites in large genomic mammalian sequences. Bioinformatics 2002, 18:631-633.
-
(2002)
Bioinformatics
, vol.18
, pp. 631-633
-
-
Ponger, L.1
Mouchiroud, D.2
-
33
-
-
70649095120
-
Differential methylation of tissue- and cancer-specific CpG island shores distinguishes human induced pluripotent stem cells, embryonic stem cells and fibroblasts
-
Doi A., Park I.H., Wen B., et al. Differential methylation of tissue- and cancer-specific CpG island shores distinguishes human induced pluripotent stem cells, embryonic stem cells and fibroblasts. Nat. Genet. 2009, 41:1350-1353.
-
(2009)
Nat. Genet.
, vol.41
, pp. 1350-1353
-
-
Doi, A.1
Park, I.H.2
Wen, B.3
-
34
-
-
59149084538
-
The human colon cancer methylome shows similar hypo- and hypermethylation at conserved tissue-specific CpG island shores
-
Irizarry R.A., Ladd-Acosta C., Wen B., et al. The human colon cancer methylome shows similar hypo- and hypermethylation at conserved tissue-specific CpG island shores. Nat. Genet. 2009, 41:178-186.
-
(2009)
Nat. Genet.
, vol.41
, pp. 178-186
-
-
Irizarry, R.A.1
Ladd-Acosta, C.2
Wen, B.3
-
35
-
-
79956006215
-
QDMR: a quantitative method for identification of differentially methylated regions by entropy
-
Zhang Y., Liu H., Lv J., et al. QDMR: a quantitative method for identification of differentially methylated regions by entropy. Nucleic Acids Res. 2011, 39:e58.
-
(2011)
Nucleic Acids Res.
, vol.39
-
-
Zhang, Y.1
Liu, H.2
Lv, J.3
-
36
-
-
77649267695
-
Dynamic changes in the human methylome during differentiation
-
Laurent L., Wong E., Li G., et al. Dynamic changes in the human methylome during differentiation. Genome Res. 2010, 20:320-331.
-
(2010)
Genome Res.
, vol.20
, pp. 320-331
-
-
Laurent, L.1
Wong, E.2
Li, G.3
-
37
-
-
79952258224
-
Somatic coding mutations in human induced pluripotent stem cells
-
Gore A., Li Z., Fung H.L., et al. Somatic coding mutations in human induced pluripotent stem cells. Nature 2011, 471:63-67.
-
(2011)
Nature
, vol.471
, pp. 63-67
-
-
Gore, A.1
Li, Z.2
Fung, H.L.3
-
38
-
-
40749109894
-
Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning
-
Cokus S.J., Feng S., Zhang X., et al. Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning. Nature 2008, 452:215-219.
-
(2008)
Nature
, vol.452
, pp. 215-219
-
-
Cokus, S.J.1
Feng, S.2
Zhang, X.3
-
39
-
-
42549090878
-
High-resolution mapping of epigenetic modifications of the rice genome uncovers interplay between DNA methylation, histone methylation, and gene expression
-
Li X., Wang X., He K., et al. High-resolution mapping of epigenetic modifications of the rice genome uncovers interplay between DNA methylation, histone methylation, and gene expression. Plant cell 2008, 20:259-276.
-
(2008)
Plant cell
, vol.20
, pp. 259-276
-
-
Li, X.1
Wang, X.2
He, K.3
-
40
-
-
14744267496
-
Association of tissue-specific differentially methylated regions (TDMs) with differential gene expression
-
Song F., Smith J.F., Kimura M.T., et al. Association of tissue-specific differentially methylated regions (TDMs) with differential gene expression. Proc. Natl. Acad. Sci. U. S. A. 2005, 102:3336-3341.
-
(2005)
Proc. Natl. Acad. Sci. U. S. A.
, vol.102
, pp. 3336-3341
-
-
Song, F.1
Smith, J.F.2
Kimura, M.T.3
-
41
-
-
40749153583
-
Epigenetics: the DNA methylation profile of tissue-dependent and differentially methylated regions in cells
-
Ohgane J., Yagi S., Shiota K. Epigenetics: the DNA methylation profile of tissue-dependent and differentially methylated regions in cells. Placenta 2008, 29(Suppl. A):S29-S35.
-
(2008)
Placenta
, vol.29 A
, Issue.SUPPL.
-
-
Ohgane, J.1
Yagi, S.2
Shiota, K.3
-
42
-
-
79951529848
-
Dynamic stage-specific changes in imprinted differentially methylated regions during early mammalian development and prevalence of non-CpG methylation in oocytes
-
Tomizawa S., Kobayashi H., Watanabe T., et al. Dynamic stage-specific changes in imprinted differentially methylated regions during early mammalian development and prevalence of non-CpG methylation in oocytes. Development 2011, 138:811-820.
-
(2011)
Development
, vol.138
, pp. 811-820
-
-
Tomizawa, S.1
Kobayashi, H.2
Watanabe, T.3
-
44
-
-
0038005018
-
DAVID: Database for Annotation, Visualization, and Integrated Discovery
-
Dennis G., Sherman B.T., Hosack D.A., et al. DAVID: Database for Annotation, Visualization, and Integrated Discovery. Genome Biol. 2003, 4:P3.
-
(2003)
Genome Biol.
, vol.4
-
-
Dennis, G.1
Sherman, B.T.2
Hosack, D.A.3
|