Gene expression profiling in the skin of zebrafish infected with Citrobacter freundii

Fish and Shellfish Immunology

Volumn 32, Issue 2, 2012, Pages 273-283

  Lü, Aijun ^a   Hu, Xiucai ^a   Xue, Jun ^a   Zhu, Jingrong ^a   Wang, Yi ^a   Zhou, Guangzhou ^b  

^a JIANGSU NORMAL UNIVERSITY   (China)

^b HENAN UNIVERSITY OF TECHNOLOGY   (China)

Author keywords

Citrobacter freundii; Gene expression; Skin; Zebrafish

Indexed keywords

BACTERIA (MICROORGANISMS); CITROBACTER FREUNDII; CYPRINIDAE; CYPRINUS CARPIO; DANIO RERIO;

EID: 84855187698     PISSN: 10504648     EISSN: 10959947     Source Type: Journal    
DOI: 10.1016/j.fsi.2011.11.016     Document Type: Article

References (73)

1. Zhao X., Findly R.C., Dickerson H.W. Cutaneous antibody-secreting cells and B cells in a teleost fish. Dev Comp Immunol 2008, 32:500-508.
2. Lü A.J., Li Z.Q., Zhang Q.Y. Detection of cutaneous antibodies in excised skin explants from grass carp, Ctenopharyngodon idella (Valenciennes), immune to Scophthalmus maximus rhabdovirus. JFish Dis 2008, 31:559-565.
3. Shoemaker C.A., Xu D.H., Shelby R.A., Klesius P.H. Detection of cutaneous antibodies against Flavobacterium columnare in channel catfish, Ictalurus punctatus (Rafinesque). Aquacult Res 2005, 36:813-818.
4. Xu D.H., Klesius P.H., Shelby R.A. Cutaneous antibodies in excised skin from channel catfish, Ictalurus punctatus (Rafinesque), immune to Ichthyophthirius multifiliis. JFish Dis 2002, 25:45-52.
5. Caipang C.M., Lazado C.C., Brinchmann M.F., Rombout J.H., Kiron V. Differential expression of immune and stress genes in the skin of Atlantic cod (Gadus morhua). Comp Biochem Physiol Part D Genomics Proteomics 2011, 6:158-162.
6. Lindenstrøm T., Secombes C.J., Buchmann K. Expression of immune response genes in rainbow trout skin induced by Gyrodactylus derjavini infections. Vet Immunol Immunopathol 2004, 97:137-148.
7. Rakers S., Gebert M., Uppalapati S., Meyer W., Maderson P., Sell A.F., et al. 'Fish matters': the relevance of fish skin biology to investigative dermatology. Exp Dermatol 2010, 19:313-324.
8. Karsi A., Cao D., Li P., Patterson A., Kocabas A., Feng J., et al. Transcriptome analysis of channel catfish (Ictalurus punctatus): initial analysis of gene expression and microsatellite-containing cDNAs in the skin. Gene 2002, 285:157-168.
9. Lindenstrøm T., Buchmann K., Secombes C.J. Gyrodactylus derjavini infection elicits IL-1ß expression in rainbow trout skin. Fish Shellfish Immunol 2003, 15:107-115.
10. Sigh J., Lindenstrøm T., Buchmann K. Expression of pro-inflammatory cytokines in rainbow trout (Oncorhynchus mykiss) during an infection with Ichthyophthirius multifiliis. Fish Shellfish Immunol 2004, 17:75-86.
11. Sigh J., Lindenstrøm T., Buchmann K. The parasitic ciliate Ichthyophthirius multifiliis induces expression of immune relevant genes in rainbow trout, Oncorhynchus mykiss (Walbaum). JFish Dis 2004, 27:409-417.
12. Gonzalez S.F., Chatziandreou N., Nielsen M.E., Li W., Rogers J., Taylor R., et al. Cutaneous immune responses in the common carp detected using transcript analysis. Mol Immunol 2007, 44:1664-1679.
13. Skugor S., Glover K.A., Nilsen F., Krasnov A. Local and systemic gene expression responses of Atlantic salmon (Salmo salar L.) to infection with the salmon louse (Lepeophtheirus salmonis). BMC Genomics 2008, 9:498.
14. Sullivan C., Kim C.H. Zebrafish as a model for infectious disease and immune function. Fish Shellfish Immunol 2008, 25:341-350.
15. Wu Z., Zhang W., Lu Y., Lu C. Transcriptome profiling of zebrafish infected with Streptococcus suis. Microb Pathog 2010, 48:178-187.
16. Meijer A.H., Verbeek F.J., Salas-Vidal E., Corredor-Adámez M., Bussman J., van der Sar A.M., et al. Transcriptome profiling of adult zebrafish at the late stage of chronic tuberculosis due to Mycobacterium marinum infection. Mol Immunol 2005, 42:1185-1203.
17. Stockhammer O.W., Zakrzewska A., Hegedûs Z., Spaink H.P., Meijer A.H. Transcriptome profiling and functional analyses of the zebrafish embryonic innate immune response to Salmonella infection. JImmunol 2009, 182:5641-5653.
18. Lü A.J., Hu X.C., Zheng L., Zhu A.H., Cao C.L., Jiang J.H. Isolation and characterization of Citrobacter spp. from the intestine of grass carp Ctenopharyngodon idellus. Aquaculture 2011, 313:156-160.
19. López-Muñoz A., Roca F.J., Meseguer J., Mulero V. New insights into the evolution of IFNs: zebrafish group II IFNs induce a rapid and transient expression of IFN-dependent genes and display powerful antiviral activities. JImmunol 2009, 182:3440-3449.
20. Elibol-Flemming B., Waldbieser G.C., Wolters W.R., Boyle C.R., Hanson L.A. Expression analysis of selected immune-relevant genes in channel catfish during Edwardsiella ictaluri infection. JAquat Anim Health 2009, 21:23-35.
21. Peatman E., Terhune J., Baoprasertkul P., Xu P., Nandi S., Wang S., et al. Microarray analysis of gene expression in the blue catfish liver reveals early activation of the MHC class I pathway after infection with Edwardsiella ictaluri. Mol Immunol 2008, 45:553-566.
22. Peatman E., Baoprasertkul P., Terhune J., Xu P., Nandi S., Kucuktas H., et al. Expression analysis of the acute phase response in channel catfish (Ictalurus punctatus) after infection with a Gram-negative bacterium. Dev Comp Immunol 2007, 31:1183-1196.
23. Boshra H., Li J., Sunyer J.O. Recent advances on the complement system of teleost fish. Fish Shellfish Immunol 2006, 20:239-262.
24. Gasque P. Complement: a unique innate immune sensor for danger signals. Mol Immunol 2004, 41:1089-1098.
25. Buchmann K., Lindenstrøm T. Interactions between monogenean parasites and their fish hosts. Int J Parasitol 2002, 32:309-319.
26. Gonzalez S.F., Buchmann K., Nielsen M.E. Complement expression in common carp (Cyprinus carpio L.) during infection with Ichthyophthirius multifiliis. Dev Comp Immunol 2007, 31:576-586.
27. Harboe M., Thorgersen E.B., Mollnes T.E. Advances in assay of complement function and activation. Adv Drug Deliv Rev 2011, 63:976-987.
28. Kania P.W., Sorensen R.R., Koch C., Brandt J., Kliem A., Vitved L., et al. Evolutionary conservation of mannan-binding lectin (MBL) in bony fish: identification, characterization and expression analysis of three bona fide collectin homologues of MBL in the rainbow trout (Onchorhynchus mykiss). Fish Shellfish Immunol 2010, 29:910-920.
29. Kondo H., Yeu Tzeh A.G., Hirono I., Aoki T. Identification of a novel C-type lectin gene in Japanese flounder, Paralichthys olivaceus. Fish Shellfish Immunol 2007, 23:1089-1094.
30. Nikolakopoulou K., Zarkadis I.K. Molecular cloning and characterisation of two homologues of Mannose-Binding Lectin in rainbow trout. Fish Shellfish Immunol 2006, 21:305-314.
31. Zhang H., Peatman E., Liu H., Niu D., Feng T., Kucuktas H., et al. Characterization of a mannose-binding lectin from channel catfish (Ictalurus punctatus). Res Vet Sci 2011, 10.1016/j.rvsc.2011.03.024.
32. Liu H., Takano T., Abernathy J., Wang S., Sha Z., Jiang Y., et al. Structure and expression of transferrin gene of channel catfish, Ictalurus punctatus. Fish Shellfish Immunol 2010, 28:159-166.
33. Liu H., Peatman E., Wang W., Abernathy J., Liu S., Kucuktas H., et al. Molecular responses of ceruloplasmin to Edwardsiella ictaluri infection and iron overload in channel catfish (Ictalurus punctatus). Fish Shellfish Immunol 2011, 30:992-997.
34. Neves J.V., Wilson J.M., Rodrigues P.N.S. Transferrin and ferritin response to bacterial infection: the role of the liver and brain in fish. Dev Comp Immunol 2009, 33:848-857.
35. Palaksha K.J., Shin G.W., Kim Y.R., Jung T.S. Evaluation of non-specific immune components from the skin mucus of olive flounder (Paralichthys olivaceus). Fish Shellfish Immunol 2008, 24:479-488.
36. Easy R.H., Ross N.W. Changes in Atlantic salmon (Salmo salar) epidermal mucus protein composition profiles following infection with sea lice (Lepeophtheirus salmonis). Comp Biochem Physiol Part D Genomics Proteomics 2009, 4:159-167.
37. Zhang S., Wang S., Li H., Li L. Vitellogenin, a multivalent sensor and an antimicrobial effector. Int J Biochem Cell Biol 2011, 43:303-305.
38. Zhang S.C., Sun Y.N., Pang Q.X., Shi X.D. Hemagglutinating and antibacterial activities of vitellogenin. Fish Shellfish Immunol 2005, 19:93-95.
39. Shi X.D., Zhang S.C., Pang Q.X. Vitellogenin is a novel player in defense reactions. Fish Shellfish Immunol 2006, 20:769-772.
40. Liu Q.H., Zhang S.C., Li Z.J., Gao C.R. Characterization of a pattern recognition molecule vitellogenin from carp (Cyprinus carpio). Immunobiology 2009, 214:257-267.
41. Garcia J., Munro E.S., Monte M.M., Fourrier M.C., Whitelaw J., Smail D.A., et al. Atlantic salmon (Salmo salar L.) serum vitellogenin neutralises infectivity of infectious pancreatic necrosis virus (IPNV). Fish Shellfish Immunol 2010, 29:293-297.
42. Tong Z., Li L., Pawar R., Zhang S. Vitellogenin is an acute phase protein with bacterial-binding and inhibiting activities. Immunobiology 2010, 215:898-902.
43. Arukwe A., Røe K. Molecular and cellular detection of expression of vitellogenin and zona radiata protein in liver and skin of juvenile salmon (Salmo salar) exposed to nonylphenol. Cell Tissue Res 2008, 331:701-712.
44. Meucci V., Arukwe A. Detection of vitellogenin and zona radiata protein expressions in surface mucus of immature juvenile Atlantic salmon (Salmo salar) exposed to waterborne nonylphenol. Aquat Toxicol 2005, 73:1-10.
45. Li Z., Xu X., Huang L., Wu J., Lu Q., Xiang Z., et al. Administration of recombinant IFN1 protects zebrafish (Danio rerio) from ISKNV infection. Fish Shellfish Immunol 2010, 29:399-406.
46. Robersten B. The interferon system of teleost fish. Fish Shellfish Immunol 2006, 20:172-191.
47. Müller U., Steinhoff U., Reis L.F., Hemmi S., Pavlovic J., Zinkernagel R.M., et al. Functional role of type I and type II interferons in antiviral defense. Science 1994, 264:1918-1921.
48. Long S., Wilson M., Bengten E., Bryan L., Clem L.W., Miller N.W., et al. Identification of a cDNA encoding channel catfish interferon. Dev Comp Immunol 2004, 28:97-111.
49. Altmann S.M., Mellon M.T., Johnson M.C., Paw B.H., Trede N.S., Zon L.I., et al. Cloning and characterization of an Mx gene and its corresponding promoter from the zebrafish. Danio Rerio Dev Comp Immunol 2004, 28:295-306.
50. Zou J., Carrington A., Collet B., Dijkstra J.M., Yoshiura Y., Bols N., et al. Identification and bioactivities of IFN-gamma in rainbow trout Oncorhynchus mykiss: the first Th1-type cytokine characterized functionally in fish. JImmunol 2005, 175:2484-2494.
51. Zou W., Kim J.H., Handidu A., Li X., Kim K.I., Yan M., et al. Microarray analysis reveals that Type I interferon strongly increases the expression of immune-response related genes in Ubp43 (Usp18) deficient macrophages. Biochem Biophys Res Commun 2007, 356:193-199.
52. Halloran P.F., Urmson J., Van der Meide P.H., Autenried P. Regulation of MHC expression invivo. II. IFN-alpha/beta inducers and recombinant IFN-alpha modulate MHC antigen expression in mouse tissues. JImmunol 1989, 142:4241-4247.
53. Jørgensen S.M., Syvertsen B.L., Lukacs M., Grimholt U., Gjøen T. Expression of MHC class I pathway genes in response to infectious salmon anaemia virus in Atlantic salmon (Salmo salar L.) cells. Fish Shellfish Immunol 2006, 21:548-560.
54. Tadiso T.M., Krasnov A., Skugor S., Afanasyev S., Hordvik I., Nilsen F. Gene expression analyses of immune responses in Atlantic salmon during early stages of infection by salmon louse (Lepeophtheirus salmonis) revealed bi-phasic responses coinciding with the copepod-chalimus transition. BMC Genomics 2011, 12:141.
55. Young N.D., Cooper G.A., Nowak B.F., Koop B.F., Morrison R.N. Coordinated down-regulation of the antigen processing machinery in the gills of amoebic gill disease-affected Atlantic salmon (Salmo salar L.). Mol Immunol 2008, 45:2581-2597.
56. Saeij J.P., de Vries B.J., Wiegertjes G.F. The immune response of carp to Trypanoplasma borreli: kinetics of immune gene expression and polyclonal lymphocyte activation. Dev Comp Immunol 2003, 27:859-874.
57. Borrello M.A., Phipps R.P. Differential Thy-1 expression by splenic fibroblasts defines functionally distinct subsets. Cell Immunol 1996, 173:198-206.
58. Beissert S., He H.T., Hueber A.O., Lellouch A.C., Metze D., Mehling A., et al. Impaired cutaneous immune responses in Thy-1-deficient mice. JImmunol 1998, 161:5296-5302.
59. Huising M.O., Stolte E., Flik G., Savelkoul H.F., Verburg-van Kemenade B.M. CXC chemokines and leukocyte chemotaxis in common carp (Cyprinus carpio L.). Dev Comp Immunol 2003, 27:875-888.
60. Huising M.O., van der Meulen T., Flik G., Verburg-van Kemenade B.M. Three novel carp CXC chemokines are expressed early in ontogeny and at nonimmune sites. Eur J Biochem 2004, 271:4094-4106.
61. Gonzalez S.F., Buchmann K., Nielsen M.E. Real-time gene expression analysis in carp (Cyprinus carpio L.) skin: inflammatory responses caused by the ectoparasite Ichthyophthirius multifiliis. Fish Shellfish Immunol 2007, 22:641-650.
62. Gonzalez S.F., Huising M.O., Stakauskas R., Forlenza M., Lidy Verburg-van Kemenade B.M., Buchmann K., et al. Real-time gene expression analysis in carp (Cyprinus carpio L.) skin: inflammatory responses to injury mimicking infection with ectoparasites. Dev Comp Immunol 2007, 31:244-254.
63. Akerström B., Lögdberg L., Berggård T., Osmark P., Lindqvist A. alpha(1)-Microglobulin: a yellow-brown lipocalin. Biochim Biophys Acta 2000, 1482:172-184.
64. Zuo W., Woo P.T.K. Natural anti-proteases in rainbow trout, Oncorhynchus mykiss and brook charr, Salvelinus fontinalis and the invitro neutralization of fish alpha 2-macroglobulin by the metalloprotease from the pathogenic haemoflagellate, Cryptobia salmositica. Parasitology 1997, 114:375-381.
65. Qin C., Chen L., Qin J.G., Zhao D., Zhang H., Wu P., et al. Molecular cloning and characterization of alpha 2-macroglobulin (alpha2-M) from the haemocytes of Chinese mitten crab Eriocheir sinensis. Fish Shellfish Immunol 2010, 29:195-203.
66. Ma H.M., Wang B., Zhang J.Q., Li F.H., Xiang J.H. Multiple forms of alpha-2 macroglobulin in shrimp Fenneropenaeus chinesis and their transcriptional response to WSSV or Vibrio pathogen infection. Dev Comp Immunol 2010, 34:677-684.
67. Onara D.F., Forlenza M., Gonzalez S.F., Rakus K.Ł., Pilarczyk A., Irnazarow I., et al. Differential transcription of multiple forms of alpha-2-macroglobulin in carp (Cyprinus carpio) infected with parasites. Dev Comp Immunol 2008, 32:339-347.
68. Thompson M.R., Xu D., Williams B.R. ATF3 transcription factor and its emerging roles in immunity and cancer. JMol Med 2009, 87:1053-1060.
69. Feng C.Y., Rise M.L. Identification and molecular cloning of Atlantic cod (Gadus morhua) activating transcription factor 3 (ATF3) transcript and its induction in spleen following intraperitoneal polyriboinosinic polyribocytidylic acid injection. Fish Shellfish Immunol 2011, 31:475-481.
70. Gilchrist M., Thorsson V., Li B., Rust A.G., Korb M., Roach J.C., et al. Systems biology approaches identify ATF3 as a negative regulator of Toll-like receptor 4. Nature 2006, 441:173-178.
71. Rosenberger C.M., Clark A.E., Treuting P.M., Johnson C.D., Aderem A. ATF3 regulates MCMV infection in mice by modulating IFN-gamma expression in natural killer cells. Proc Natl Acad Sci USA 2008, 105:2544-2549.
72. Whitmore M.M., Iparraguirre A., Kubelka L., Weninger W., Hai T., Williams B.R. Negative regulation of TLR-signaling pathways by activating transcription factor-3. JImmunol 2007, 179:3622-3630.
73. Filén S., Ylikoski E., Tripathi S., West A., Björkman M., Nyström J., et al. Activating transcription factor 3 is a positive regulator of human IFNG gene expression. JImmunol 2010, 184:4990-4999.