Automatic montage of SD-OCT data sets

Optics Express

Volumn 19, Issue 27, 2011, Pages 26239-26248

  Li, Ying ^a   Gregori, Giovanni ^a   Lam, Byron L ^a   Rosenfeld, Philip J ^a  

^a UNIVERSITY OF MIAMI MILLER SCHOOL OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BLOOD VESSELS; OPHTHALMOLOGY;

AUTOMATIC ALGORITHMS; CROSS CORRELATIONS; FUNDUS IMAGE; IMAGING PROTOCOL; LARGE FIELD OF VIEWS; MATCHING POINTS; REGISTRATION ERROR; RETINAL DEGENERATIONS;

ITERATIVE METHODS;

ALGORITHM; ARTICLE; AUTOMATED PATTERN RECOGNITION; COMPUTER ASSISTED DIAGNOSIS; HISTOLOGY; HUMAN; IMAGE SUBTRACTION; METHODOLOGY; OPTICAL COHERENCE TOMOGRAPHY; RETINA; RETINOSCOPY;

ALGORITHMS; HUMANS; IMAGE INTERPRETATION, COMPUTER-ASSISTED; PATTERN RECOGNITION, AUTOMATED; RETINA; RETINOSCOPY; SUBTRACTION TECHNIQUE; TOMOGRAPHY, OPTICAL COHERENCE;

EID: 84555223584     PISSN: None     EISSN: 10944087     Source Type: Journal    
DOI: 10.1364/OE.19.026239     Document Type: Article

References (37)

1. Z. Yehoshua, P. J. Rosenfeld, G. Gregori, and F. Penha, "Spectral domain optical coherence tomography imaging of dry age-related macular degeneration," Ophthalmic Surg. Lasers Imaging 41(6 Suppl), S6-S14 (2010).
2. B. Potsaid, B. Baumann, D. Huang, S. Barry, A. E. Cable, J. S. Schuman, J. S. Duker, and J. G. Fujimoto, "Ultrahigh speed 1050nm swept source/Fourier domain OCT retinal and anterior segment imaging at 100,000 to 400,000 axial scans per second," Opt. Express 18(19), 20029-20048 (2010).
3. B. Povazay, B. Hermann, B. Hofer, V. Kajić, E. Simpson, T. Bridgford, and W. Drexler, "Wide-field optical coherence tomography of the choroid in vivo," Invest. Ophthalmol. Vis. Sci. 50(4), 1856-1863 (2008).
4. T. Klein, W. Wieser, C. M. Eigenwillig, B. R. Biedermann, and R. Huber, "Megahertz OCT for ultrawide-field retinal imaging with a 1050 nm Fourier domain mode-locked laser," Opt. Express 19(4), 3044-3062 (2011).
5. M. Emmenlauer, O. Ronneberger, A. Ponti, P. Schwarb, A. Griffa, A. Filippi, R. Nitschke, W. Driever, and H. Burkhardt, "XuvTools: free, fast and reliable stitching of large 3D datasets," J. Microsc. 233(1), 42-60 (2009).
6. S. Preibisch, S. Saalfeld, and P. Tomancak, "Globally optimal stitching of tiled 3D microscopic image acquisitions," Bioinformatics 25(11), 1463-1465 (2009).
7. Y. Yu and H. Peng, "Automated high speed stitching of large 3D microscopic images," Proc. of IEEE 2011 International Symposium on Biomedical Imaging: From Nano to Macro 238-241 (2011).
8. J. Yoo, I. V. Larina, K. V. Larin, M. E. Dickinson, and M. Liebling, "Increasing the field-of-view of dynamic cardiac OCT via post-acquisition mosaicing without affecting frame-rate or spatial resolution," Biomed. Opt. Express 2(9), 2614-2622 (2011).
9. S. L. Jiao, R. Knighton, X. R. Huang, G. Gregori, and C. A. Puliafito, "Simultaneous acquisition of sectional and fundus ophthalmic images with spectral-domain optical coherence tomography," Opt. Express 13(2), 444-452 (2005). (Pubitemid 40224918)
10. M. Wojtkowski, T. Bajraszewski, I. Gorczyńska, P. Targowski, A. Kowalczyk, W. Wasilewski, and C. Radzewicz, "Ophthalmic imaging by spectral optical coherence tomography," Am. J. Ophthalmol. 138(3), 412-419 (2004). (Pubitemid 39208568)
11. M. Niemeijer, M. K. Garvin, B. V. Ginneken, M. Sonka, and M. D. Abramoff, "Vessel segmentation in 3D spectral OCT scans of the retina," Proc. SPIE 6914, 69141R (2008).
12. Z. Hu, M. Niemeijer, M. D. Abràmoft, K. Lee, and M. K. Garvin, "Automated segmentation of 3-D spectral OCT retinal blood vessels by neural canal opening false positive suppression," Med. Image Comput. Comput. Assist. Interv. 13(Pt 3), 33-40 (2010).
13. R. Szeliski, "Image alignment and stitching: A tutorial," MSR-TR-2004-92, Microsoft Research (2004).
14. X. Fang, B. Luo, H. Zhao, J. Tang, and S. Zhai, "New multi-resolution image stitching with local and global alignment," IET Comput. Vision 4(4), 231-246 (2010).
15. H. Y. Shum and R. Szeliski, "Construction of panoramic image mosaics with global and local alignment," Int. J. Comput. Vis. 36(2), 101-130 (2000). (Pubitemid 30588074)
16. D. L. Milgram, "Computer Methods for Creating Photomosaics," IEEE Trans. Comput. C-24(11), 1113-1119 (1975).
17. G. H. Yang, C. V. Stewart, M. Sofka, and C. L. Tsai, "Registration of challenging image pairs: initialization, estimation, and decision," IEEE Trans. Pattern Anal. Mach. Intell. 29(11), 1973-1989 (2007). (Pubitemid 47423790)
18. A. A. Mahurkar, M. A. Vivino, B. L. Trus, E. M. Kuehl, M. B. Datiles 3rd, and M. I. Kaiser-Kupfer, "Constructing retinal fundus photomontages. A new computer-based method," Invest. Ophthalmol. Vis. Sci. 37(8), 1675-1683 (1996). (Pubitemid 26271419)
19. P. C. Cattin, H. Bay, L. Van Gool, and G. Szekely, "Retina mosaicing using local features," Med. Image Comput. Comput. Assist. Interv. 4191, 185-192 (2006). (Pubitemid 44609219)
20. D. E. Becker, A. Can, J. N. Turner, H. L. Tanenbaum, and B. Roysam, "Image processing algorithms for retinal montage synthesis, mapping, and real-time location determination," IEEE Trans. Biomed. Eng. 45(1), 105-118 (1998). (Pubitemid 28053018)
21. A. Can, C. V. Stewart, B. Roysam, and H. L. Tanenbaum, "A feature-based technique for joint, linear estimation of high-order image-to-mosaic transformations: Mosaicing the curved human retina," IEEE Trans. Pattern Anal. Mach. Intell. 24(3), 412-419 (2002). (Pubitemid 35289356)
22. S. Lee, M. D. Abramoff, and J. M. Reinhardt, "Retinal image mosaicing using the radial distortion correction model," Proc. SPIE Medical Imaging 6914, 91435 (2008).
23. G. H. Yang and C. V. Stewart, "Covariance-driven mosaic formation from sparsely-overlapping image sets with application to retinal image mosaicing," Proceedings of the 2004 IEEE Computer Society Conference on Computer Vision and Pattern Recognition 1, 804-810 (2004).
24. T. E. Choe, I. Cohen, M. Lee, and G. Medioni, "Optimal global mosaic generation from retinal images," Proceedings of 18th International Conference on Pattern Recognition 3, 681-684 (2006). (Pubitemid 46553213)
25. W. Aguilar, M. E. Martinez-Perez, Y. Frauel, F. Escolano, M. A. Lozano, and A. Espinosa-Romero, "Graphbased methods for retinal mosaicing and vascular characterization," Lect. Notes Comput. Sci. 4538, 25-36 (2007).
26. D. G. Lowe, "Distinctive image features from scale-invariant keypoints," Int. J. Comput. Vis. 60(2), 91-110 (2004).
27. J. Zheng, J. Tian, K. Deng, X. Dai, X. Zhang, and M. Xu, "Salient feature region: a new method for retinal image registration," IEEE Trans. Inf. Technol. Biomed. 15(2), 221-232 (2011).
28. J. M. Schmitt, S. H. Xiang, and K. M. Yung, "Speckle in optical coherence tomography," J. Biomed. Opt. 4(1), 95-105 (1999). (Pubitemid 129694556)
29. Y. Li, G. Gregori, R. W. Knighton, B. J. Lujan, and P. J. Rosenfeld, "Registration of OCT fundus images with color fundus photographs based on blood vessel ridges," Opt. Express 19(1), 7-16 (2011).
30. A. Can, C. V. Stewart, B. Roysam, and H. L. Tanenbaum, "A feature-based, robust, hierarchical algorithm for registering pairs of images of the curved human retina," IEEE Trans. Pattern Anal. Mach. Intell. 24(3), 347-364 (2002). (Pubitemid 35289351)
31. T. Chanwimaluang, G. L. Fan, and S. R. Fransen, "Hybrid retinal image registration," IEEE Trans. Inf. Technol. Biomed. 10(1), 129-142 (2006). (Pubitemid 43092326)
32. S. Lee, M. D. Abramoff, and J. M. Reinhardt, "Retinal image mosaicing using the radial distortion correction model - art. no. 691435," Proc. SPIE 6914, 91435 (2008).
33. M. Sofka, Y. Gehua, and C. V. Stewart, "Simultaneous Covariance Driven Correspondence (CDC) and Transformation Estimation in the Expectation Maximization Framework," Computer Vision and Pattern Recognition, 2007. CVPR '07. IEEE Conference on 1-8 (2007).
34. Y. Li, N. Hutchings, R. W. Knighton, G. Gregori, R. J. Lujan, and J. G. Flanagan, "Ridge-branch-based blood vessel detection algorithm for multimodal retinal images," Proc. SPIE. 7259, 72594K (2009).
35. T. Fabritius, S. Makita, M. Miura, R. Myllylä, and Y. Yasuno, "Automated segmentation of the macula by optical coherence tomography," Opt. Express 17(18), 15659-15669 (2009).
36. G. Gregori, F. H. Wang, P. J. Rosenfeld, Z. Yehoshua, N. Z. Gregori, B. J. Lujan, C. A. Puliafito, and W. J. Feuer, "Spectral domain optical coherence tomography imaging of drusen in nonexudative age-related macular degeneration," Ophthalmology 118(7), 1373-1379 (2011).
37. Q. Yang, C. A. Reisman, Z. G. Wang, Y. Fukuma, M. Hangai, N. Yoshimura, A. Tomidokoro, M. Araie, A. S. Raza, D. C. Hood, and K. P. Chan, "Automated layer segmentation of macular OCT images using dual-scale gradient information," Opt. Express 18(20), 21293-21307 (2010).