Increasing the field-of-view of dynamic cardiac OCT via post-acquisition mosaicing without affecting frame-rate or spatial resolution

Biomedical Optics Express

Volumn 2, Issue 9, 2011, Pages 2614-2622

  Yoo, JeaBuem ^a   Larina, Irina V ^b   Larin, Kirill V ^b,c   Dickinson, Mary E ^b   Liebling, Michael ^a  

^a University of California   (United States)

^b BAYLOR COLLEGE OF MEDICINE   (United States)

^c UNIVERSITY OF HOUSTON   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

IMAGE RESOLUTION;

BEATING HEART; BLOOD FLOW; DIRECT IMAGING; DYNAMIC STRUCTURE; FIELD OF VIEWS; FRAME RATE; HIGH-SPEED; MOSAICING; MOVING STRUCTURES; NON-RIGID; RAT HEART; SCATTERING TISSUE; SIGNALTONOISE RATIO (SNR); SPATIAL ALIGNMENT; SPATIAL LOCATION; SPATIAL RESOLUTION; SPATIO-TEMPORAL; TEMPORAL REGISTRATION; TILED IMAGES;

OPTICAL TOMOGRAPHY;

MURINAE; RATTUS;

EID: 84555215464     PISSN: None     EISSN: 21567085     Source Type: Journal    
DOI: 10.1364/BOE.2.002614     Document Type: Article

References (23)

1. T. Yelbuz, M. Choma, L. Thrane, M. Kirby, and J. Izatt, "A new high-resolution imaging technology to study cardiac development in chick embryos, " Circulation 106, 2771-2774 (2002).
2. I. V. Larina, E. F. Carbajal, V. V. Tuchin, M. E. Dickinson, and K. V. Larin, "Enhanced OCT imaging of embryonic tissue with optical clearing, " Laser Phys. Lett. 5, 476-479 (2008).
3. I. Larina, N. Sudheendran, M. Ghosn, J. Jiang, A. Cable, K. Larin, and M. Dickinson, "Live imaging of blood flow in mammalian embryos using Doppler swept-source optical coherence tomography, " J. Biomed. Opt. 13, 060506 (2008).
4. I. Larina, S. Ivers, S. Syed, M. Dickinson, and K. Larin, "Hemodynamic measurements from individual blood cells in early mammalian embryos with Doppler swept source OCT, " Opt. Lett. 34, 986-988 (2009).
5. K. V. Larin, I. V. Larina, M. Liebling, and M. E. Dickinson, "Live imaging of early developmental processes in mammalian embryos with optical coherence tomography, " J. Innov. Opt. Health Sci. 2, 253-259 (2009).
6. M. Gargesha, M.W. Jenkins, D. L. Wilson, and A. M. Rollins, "High temporal resolution OCT using image-based retrospective gating, " Opt. Express 17, 10786-10799 (2009).
7. A. Liu, R. Wang, K. Thornburg, and S. Rugonyi, "Efficient postacquisition synchronization of 4-D nongated cardiac images obtained from optical coherence tomography: application to 4-D reconstruction of the chick embryonic heart, " J. Biomed. Opt. 14, 044020 (2009).
8. T. Schmoll, C. Kolbitsch, and R. A. Leitgeb, "Ultra-high-speed volumetric tomography of human retinal blood flow, " Opt. Express 17, 4166-4176 (2009).
9. W. Wieser, B. R. Biedermann, T. Klein, C. M. Eigenwillig, and R. Huber, "Multi-megahertz OCT: High quality 3D imaging at 20 million A-scans and 4.5 GVoxels per second, " Opt. Express 18, 14685-14704 (2010).
10. J. Vermot, S. E. Fraser, and M. Liebling, "Fast fluorescence microscopy for imaging the dynamics of embryonic development, " HFSP J. 2, 143-155 (2008).
11. A. Can, C. Stewart, B. Roysam, and H. Tanenbaum, "A feature-based technique for joint, linear estimation of high-order image-to-mosaic transformations: Mosaicing the curved human retina, " IEEE Trans. Pattern Anal. 24, 412-419 (2002).
12. P. Th́evenaz and M. Unser, "User-friendly semiautomated assembly of accurate image mosaics in microscopy, " Microsc. Res. Tech. 70, 135-146 (2007).
13. M. Emmenlauer, O. Ronneberger, A. Ponti, P. Schwarb, A. Griffa, A. Filippi, R. Nitschke, W. Driever, and H. Burkhardt, "XuvTools: free, fast and reliable stitching of large 3D datasets, " J. Microsc. 233, 42-60 (2009).
14. J. Zupanc, A. Dobnikar, D. Drobne, J. Valant, D. Erdogmus, and E. Bas, "Biological reactivity of nanoparticles: mosaics from optical microscopy videos of giant lipid vesicles, " J. Biomed. Opt. 16, 026003 (2011).
15. H. Sawhney and R. Kumar, "True multi-image alignment and its application to mosaicing and lens distortion correction, " IEEE Trans. Pattern Anal. 21, 235-243 (1999).
16. H. Shum and R. Szeliski, "Systems and experiment paper: Construction of panoramic image mosaics with global and local alignment, " Int. J. Comput. Vis. 36, 101-130 (2000).
17. M. Liebling, A. S. Forouhar, M. Gharib, S. E. Fraser, and M. E. Dickinson, "Four-dimensional cardiac imaging in living embryos via postacquisition synchronization of nongated slice sequences, " J. Biomed. Opt. 10, 054001 (2005).
18. M. Liebling, A. S. Forouhar, R. Wolleschensky, B. Zimmerman, R. Ankerhold, S. E. Fraser, M. Gharib, and M. E. Dickinson, "Rapid three-dimensional imaging and analysis of the beating embryonic heart reveals functional changes during development, " Dev. Dynam. 235, 2940-2948 (2006).
19. P. Th́evenaz, U. E. Ruttimann, and M. Unser, "A pyramid approach to subpixel registration based on intensity, " IEEE Trans. Image Process. 7, 27-41 (1998).
20. M. Liebling, J. Vermot, A. Forouhar, M. Gharib, M. Dickinson, and S. Fraser, "Nonuniform temporal alignment of slice sequences for four-dimensional imaging of cyclically deforming embryonic structures, " in "Proc. ISBI 2006, "(2006), pp. 1156-1159.
21. A. Frangi, D. Rueckert, J. Schnabel, and W. Niessen, "Automatic construction of multiple-object threedimensional statistical shape models: Application to cardiac modeling, " IEEE Trans. Med. Imaging 21, 1151-1166 (2002).
22. D. Perperidis, R. H. Mohiaddin, and D. Rueckert, "Spatio-temporal free-form registration of cardiac MR image sequences, " Med. Image Anal. 9, 441-456 (2005).
23. S. Bhat, I. V. Larina, K. V. Larin, M. E. Dickinson, and M. Liebling, "Multiple-cardiac-cycle noise reduction in dynamic optical coherence tomography of the embryonic heart and vasculature, " Opt. Lett. 34, 3704-3706 (2009).