-
1
-
-
70349482953
-
Novel trends in high-throughput screening
-
Mayr, L. M.; Bojanic, D. Novel trends in high-throughput screening Curr. Opin. Pharmacol. 2009, 9, 580-588
-
(2009)
Curr. Opin. Pharmacol.
, vol.9
, pp. 580-588
-
-
Mayr, L.M.1
Bojanic, D.2
-
2
-
-
79961000103
-
The role of computational methods in the identification of bioactive compounds
-
Glick, M.; Jacoby, E. The role of computational methods in the identification of bioactive compounds Curr. Opin. Chem. Biol. 2011, 15, 540-546
-
(2011)
Curr. Opin. Chem. Biol.
, vol.15
, pp. 540-546
-
-
Glick, M.1
Jacoby, E.2
-
3
-
-
77956477049
-
Drug profiling: Knowing where it hits
-
Merino, A.; Bronowska, A. K.; Jackson, D. B.; Cahill, D. J. Drug profiling: knowing where it hits Drug Discovery Today 2010, 15, 749-756
-
(2010)
Drug Discovery Today
, vol.15
, pp. 749-756
-
-
Merino, A.1
Bronowska, A.K.2
Jackson, D.B.3
Cahill, D.J.4
-
4
-
-
43649099086
-
Turning promiscuous kinase inhibitors into safer drugs
-
Zhang, X.; Crespo, A.; Fernández, A. Turning promiscuous kinase inhibitors into safer drugs Trends Biotechnol. 2008, 26, 295-301
-
(2008)
Trends Biotechnol.
, vol.26
, pp. 295-301
-
-
Zhang, X.1
Crespo, A.2
Fernández, A.3
-
5
-
-
34247604930
-
When good drugs go bad
-
Giacomini, K. M.; Krauss, R. M.; Roden, D. M.; Eichelbaum, M.; Hayden, M. R.; Nakamura, Y. When good drugs go bad Nature 2007, 446, 975-977
-
(2007)
Nature
, vol.446
, pp. 975-977
-
-
Giacomini, K.M.1
Krauss, R.M.2
Roden, D.M.3
Eichelbaum, M.4
Hayden, M.R.5
Nakamura, Y.6
-
6
-
-
77955510556
-
Data structures and computational tools for the extraction of SAR information from large compound sets
-
Wawer, M.; Lounkine, E.; Wassermann, A. M.; Bajorath, J. Data structures and computational tools for the extraction of SAR information from large compound sets Drug Discovery Today 2010, 15, 630-639
-
(2010)
Drug Discovery Today
, vol.15
, pp. 630-639
-
-
Wawer, M.1
Lounkine, E.2
Wassermann, A.M.3
Bajorath, J.4
-
7
-
-
33645422011
-
Are target-family-privileged substructures truly privileged?
-
Schnur, D. M.; Hermsmeier, M. A.; Tebben, A. J. Are target-family- privileged substructures truly privileged? J. Med. Chem. 2006, 49, 2000-2009
-
(2006)
J. Med. Chem.
, vol.49
, pp. 2000-2009
-
-
Schnur, D.M.1
Hermsmeier, M.A.2
Tebben, A.J.3
-
8
-
-
27544446579
-
Promiscuous drugs compared to selective drugs (promiscuity can be a virtue)
-
Mencher, S. K.; Wang, L. G. Promiscuous drugs compared to selective drugs (promiscuity can be a virtue) BMC Clin. Pharmacol. 2005, 5, 3
-
(2005)
BMC Clin. Pharmacol.
, vol.5
, pp. 3
-
-
Mencher, S.K.1
Wang, L.G.2
-
9
-
-
10344230435
-
Molecular similarity: A key technique in molecular informatics
-
Bender, A.; Glen, R. C. Molecular similarity: a key technique in molecular informatics Org. Biomol. Chem. 2004, 2, 3204-3218
-
(2004)
Org. Biomol. Chem.
, vol.2
, pp. 3204-3218
-
-
Bender, A.1
Glen, R.C.2
-
10
-
-
70349319569
-
Clustering files of chemical structures using the Székely-Rizzo generalization of Ward's method
-
Varin, T.; Bureau, R.; Mueller, C.; Willett, P. Clustering files of chemical structures using the Székely-Rizzo generalization of Ward's method J. Mol. Graphics Modell. 2009, 28, 187-195
-
(2009)
J. Mol. Graphics Modell.
, vol.28
, pp. 187-195
-
-
Varin, T.1
Bureau, R.2
Mueller, C.3
Willett, P.4
-
11
-
-
77649220192
-
Current trends in ligand-based virtual screening: Molecular representations, data mining methods, new application areas, and performance evaluation
-
Geppert, H.; Vogt, M.; Bajorath, J. Current trends in ligand-based virtual screening: molecular representations, data mining methods, new application areas, and performance evaluation J. Chem. Inf. Model. 2010, 50, 205-216
-
(2010)
J. Chem. Inf. Model.
, vol.50
, pp. 205-216
-
-
Geppert, H.1
Vogt, M.2
Bajorath, J.3
-
12
-
-
77952772341
-
Extended-connectivity fingerprints
-
Rogers, D.; Hahn, M. Extended-connectivity fingerprints J. Chem. Inf. Model. 2010, 50, 742-754
-
(2010)
J. Chem. Inf. Model.
, vol.50
, pp. 742-754
-
-
Rogers, D.1
Hahn, M.2
-
13
-
-
0030191311
-
Stigmata: An algorithm to determine structural commonalities in diverse datasets
-
Shemetulskis, N. E.; Weininger, D.; Blankley, C. J.; Yang, J. J.; Humblet, C. Stigmata: an algorithm to determine structural commonalities in diverse datasets J. Chem. Inf. Comput. Sci. 1996, 36, 862-871
-
(1996)
J. Chem. Inf. Comput. Sci.
, vol.36
, pp. 862-871
-
-
Shemetulskis, N.E.1
Weininger, D.2
Blankley, C.J.3
Yang, J.J.4
Humblet, C.5
-
14
-
-
0033193464
-
Automated pharmacophore identification for large chemical data sets
-
Chen, X.; Rusinko, A., III; Tropsha, A.; Young, S. S. Automated pharmacophore identification for large chemical data sets J. Chem. Inf. Comput. Sci. 1999, 39, 887-896
-
(1999)
J. Chem. Inf. Comput. Sci.
, vol.39
, pp. 887-896
-
-
Chen, X.1
Rusinko III, A.2
Tropsha, A.3
Young, S.S.4
-
15
-
-
33749605153
-
Reverse fingerprinting, similarity searching by group fusion and fingerprint bit importance
-
Williams, C. Reverse fingerprinting, similarity searching by group fusion and fingerprint bit importance Mol. Divers. 2006, 10, 311-332
-
(2006)
Mol. Divers.
, vol.10
, pp. 311-332
-
-
Williams, C.1
-
16
-
-
33846871027
-
The scaffold tree - Visualization of the scaffold universe by hierarchical scaffold classification
-
Schuffenhauer, A.; Ertl, P.; Roggo, S.; Wetzel, S.; Koch, M. A.; Waldmann, H. The scaffold tree - visualization of the scaffold universe by hierarchical scaffold classification J. Chem. Inf. Model. 2007, 47, 47-58
-
(2007)
J. Chem. Inf. Model.
, vol.47
, pp. 47-58
-
-
Schuffenhauer, A.1
Ertl, P.2
Roggo, S.3
Wetzel, S.4
Koch, M.A.5
Waldmann, H.6
-
17
-
-
68049098031
-
Interactive exploration of chemical space with Scaffold Hunter
-
Wetzel, S.; Klein, K.; Renner, S.; Rauh, D.; Oprea, T. I.; Mutzel, P.; Waldmann, H. Interactive exploration of chemical space with Scaffold Hunter Nat. Chem. Biol. 2009, 5, 581-583
-
(2009)
Nat. Chem. Biol.
, vol.5
, pp. 581-583
-
-
Wetzel, S.1
Klein, K.2
Renner, S.3
Rauh, D.4
Oprea, T.I.5
Mutzel, P.6
Waldmann, H.7
-
18
-
-
79960743954
-
Mining for Bioactive Scaffolds with Scaffold Networks: Improved Compound Set Enrichment from Primary Screening Data
-
Varin, T.; Schuffenhauer, A.; Ertl, P.; Renner, S. Mining for Bioactive Scaffolds with Scaffold Networks: Improved Compound Set Enrichment from Primary Screening Data J. Chem. Inf. Model. 2011, 51, 1528-1538
-
(2011)
J. Chem. Inf. Model.
, vol.51
, pp. 1528-1538
-
-
Varin, T.1
Schuffenhauer, A.2
Ertl, P.3
Renner, S.4
-
19
-
-
0029894013
-
The properties of known drugs. 1. Molecular frameworks
-
Bemis, G. W.; Murcko, M. A. The properties of known drugs. 1. Molecular frameworks J. Med. Chem. 1996, 39, 2887-2893
-
(1996)
J. Med. Chem.
, vol.39
, pp. 2887-2893
-
-
Bemis, G.W.1
Murcko, M.A.2
-
20
-
-
77954331609
-
Scaffold explorer: An interactive tool for organizing and mining structure-activity data spanning multiple chemotypes
-
Agrafiotis, D. K.; Wiener, J. J. M. Scaffold explorer: an interactive tool for organizing and mining structure-activity data spanning multiple chemotypes J. Med. Chem. 2010, 53, 5002-5011
-
(2010)
J. Med. Chem.
, vol.53
, pp. 5002-5011
-
-
Agrafiotis, D.K.1
Wiener, J.J.M.2
-
21
-
-
33745391215
-
Prediction of biological targets for compounds using multiple-category Bayesian models trained on chemogenomics databases
-
Nidhi; Glick, M.; Davies, J. W.; Jenkins, J. L. Prediction of biological targets for compounds using multiple-category Bayesian models trained on chemogenomics databases J. Chem. Inf. Model. 2006, 46, 1124-1133
-
(2006)
J. Chem. Inf. Model.
, vol.46
, pp. 1124-1133
-
-
Nidhi1
Glick, M.2
Davies, J.W.3
Jenkins, J.L.4
-
22
-
-
79952117092
-
Bayesian methods in virtual screening and chemical biology
-
Bender, A. Bayesian methods in virtual screening and chemical biology Methods Mol. Biol. 2011, 672, 175-196
-
(2011)
Methods Mol. Biol.
, vol.672
, pp. 175-196
-
-
Bender, A.1
-
23
-
-
4544350863
-
Enrichment of extremely noisy high-throughput screening data using a naïve Bayes classifier
-
Glick, M.; Klon, A. E.; Acklin, P.; Davies, J. W. Enrichment of extremely noisy high-throughput screening data using a naïve Bayes classifier J. Biomol. Screen. 2004, 9, 32-36
-
(2004)
J. Biomol. Screen.
, vol.9
, pp. 32-36
-
-
Glick, M.1
Klon, A.E.2
Acklin, P.3
Davies, J.W.4
-
24
-
-
33750986884
-
Bayes affinity fingerprints improve retrieval rates in virtual screening and define orthogonal bioactivity space: When are multitarget drugs a feasible concept?
-
Bender, A.; Jenkins, J. L.; Glick, M.; Deng, Z.; Nettles, J. H.; Davies, J. W. Bayes affinity fingerprints improve retrieval rates in virtual screening and define orthogonal bioactivity space: when are multitarget drugs a feasible concept? J. Chem. Inf. Model. 2006, 46, 2445-2456
-
(2006)
J. Chem. Inf. Model.
, vol.46
, pp. 2445-2456
-
-
Bender, A.1
Jenkins, J.L.2
Glick, M.3
Deng, Z.4
Nettles, J.H.5
Davies, J.W.6
-
25
-
-
40049100210
-
Analysis of pharmacology data and the prediction of adverse drug reactions and off-target effects from chemical structure
-
Bender, A.; Scheiber, J.; Glick, M.; Davies, J. W.; Azzaoui, K.; Hamon, J.; Urban, L.; Whitebread, S.; Jenkins, J. L. Analysis of pharmacology data and the prediction of adverse drug reactions and off-target effects from chemical structure ChemMedChem 2007, 2, 861-873
-
(2007)
ChemMedChem
, vol.2
, pp. 861-873
-
-
Bender, A.1
Scheiber, J.2
Glick, M.3
Davies, J.W.4
Azzaoui, K.5
Hamon, J.6
Urban, L.7
Whitebread, S.8
Jenkins, J.L.9
-
26
-
-
65649093070
-
Mapping adverse drug reactions in chemical space
-
Scheiber, J.; Jenkins, J. L.; Sukuru, S. C. K.; Bender, A.; Mikhailov, D.; Milik, M.; Azzaoui, K.; Whitebread, S.; Hamon, J.; Urban, L.; Glick, M.; Davies, J. W. Mapping adverse drug reactions in chemical space J. Med. Chem. 2009, 52, 3103-3107
-
(2009)
J. Med. Chem.
, vol.52
, pp. 3103-3107
-
-
Scheiber, J.1
Jenkins, J.L.2
Sukuru, S.C.K.3
Bender, A.4
Mikhailov, D.5
Milik, M.6
Azzaoui, K.7
Whitebread, S.8
Hamon, J.9
Urban, L.10
Glick, M.11
Davies, J.W.12
-
27
-
-
78649633211
-
PubChem as a public resource for drug discovery
-
Li, Q.; Cheng, T.; Wang, Y.; Bryant, S. H. PubChem as a public resource for drug discovery Drug Discovery Today 2010, 15, 1052-1057
-
(2010)
Drug Discovery Today
, vol.15
, pp. 1052-1057
-
-
Li, Q.1
Cheng, T.2
Wang, Y.3
Bryant, S.H.4
-
28
-
-
27744585251
-
An Open Standard for Chemical Structure Representation - The IUPAC Chemical Identifier
-
Nimes, France, October 19-22, 2003; Infonortics: Tetbury, U.K
-
Stein, S.; Heller, S.; Tchekhovski, D. An Open Standard for Chemical Structure Representation-The IUPAC Chemical Identifier. Nimes International Chemical Information Conference Proceedings; Nimes, France, October 19-22, 2003; Infonortics: Tetbury, U.K., 2003; pp 131-143.
-
(2003)
Nimes International Chemical Information Conference Proceedings
, pp. 131-143
-
-
Stein, S.1
Heller, S.2
Tchekhovski, D.3
-
30
-
-
84855735976
-
-
The R Project for Statistical Computing (version 2.13). (accessed Nov. 2011)
-
The R Project for Statistical Computing (version 2.13). http://www.r-project.org (accessed Nov. 2011).
-
-
-
-
31
-
-
0003607151
-
-
Eds. Academic Press: Waltham, MA
-
Multivariate Analysis; Mardia, K. V.; Kent, J. T.; Bibby, J. M., Eds.; Academic Press: Waltham, MA, 1980.
-
(1980)
Multivariate Analysis
-
-
Mardia, K.V.1
Kent, J.T.2
Bibby, J.M.3
-
32
-
-
37249031865
-
Mapping of activity-specific fragment pathways isolated from random fragment populations reveals the formation of coherent molecular cores
-
Lounkine, E.; Batista, J.; Bajorath, J. Mapping of activity-specific fragment pathways isolated from random fragment populations reveals the formation of coherent molecular cores J. Chem. Inf. Model. 2007, 47, 2133-2139
-
(2007)
J. Chem. Inf. Model.
, vol.47
, pp. 2133-2139
-
-
Lounkine, E.1
Batista, J.2
Bajorath, J.3
-
33
-
-
43049136225
-
Characterization of chemical libraries for luciferase inhibitory activity
-
Auld, D. S.; Southall, N. T.; Jadhav, A.; Johnson, R. L.; Diller, D. J.; Simeonov, A.; Austin, C. P.; Inglese, J. Characterization of chemical libraries for luciferase inhibitory activity J. Med. Chem. 2008, 51, 2372-2386
-
(2008)
J. Med. Chem.
, vol.51
, pp. 2372-2386
-
-
Auld, D.S.1
Southall, N.T.2
Jadhav, A.3
Johnson, R.L.4
Diller, D.J.5
Simeonov, A.6
Austin, C.P.7
Inglese, J.8
-
34
-
-
77953091413
-
Substrate specificity of the TIM22 mitochondrial import pathway revealed with small molecule inhibitor of protein translocation
-
Hasson, S. A.; Damoiseaux, R.; Glavin, J. D.; Dabir, D. V.; Walker, S. S.; Koehler, C. M. Substrate specificity of the TIM22 mitochondrial import pathway revealed with small molecule inhibitor of protein translocation Proc. Natl. Acad. Sci. U.S.A 2010, 107, 9578-9583
-
(2010)
Proc. Natl. Acad. Sci. U.S.A
, vol.107
, pp. 9578-9583
-
-
Hasson, S.A.1
Damoiseaux, R.2
Glavin, J.D.3
Dabir, D.V.4
Walker, S.S.5
Koehler, C.M.6
-
35
-
-
77249154640
-
Evaluation of substituted N,N′-diarylsulfonamides as activators of the tumor cell specific M2 isoform of pyruvate kinase
-
Boxer, M. B.; Jiang, J.-k.; Vander Heiden, M. G.; Shen, M.; Skoumbourdis, A. P.; Southall, N.; Veith, H.; Leister, W.; Austin, C. P.; Park, H. W.; Inglese, J.; Cantley, L. C.; Auld, D. S.; Thomas, C. J. Evaluation of substituted N,N′-diarylsulfonamides as activators of the tumor cell specific M2 isoform of pyruvate kinase J. Med. Chem. 2010, 53, 1048-1055
-
(2010)
J. Med. Chem.
, vol.53
, pp. 1048-1055
-
-
Boxer, M.B.1
Jiang, J.-K.2
Vander Heiden, M.G.3
Shen, M.4
Skoumbourdis, A.P.5
Southall, N.6
Veith, H.7
Leister, W.8
Austin, C.P.9
Park, H.W.10
Inglese, J.11
Cantley, L.C.12
Auld, D.S.13
Thomas, C.J.14
-
36
-
-
84555164303
-
-
WO 2004046117, Jun. 3
-
Hoelder, S.; Naumann, T.; Schoenafinger, K.; Will, D.; Matter, H.; Mueller, G.; Le Suisse, D.; Baudoin, B.; Rooney, T.; Halley, F.; Tiraboschi, G. Pyridazone Derivatives as GSK-3beta inhibitors. WO 2004046117, Jun. 3, 2003.
-
(2003)
Pyridazone Derivatives As GSK-3beta Inhibitors
-
-
Hoelder, S.1
Naumann, T.2
Schoenafinger, K.3
Will, D.4
Matter, H.5
Mueller, G.6
Le Suisse, D.7
Baudoin, B.8
Rooney, T.9
Halley, F.10
Tiraboschi, G.11
-
37
-
-
4544338170
-
Assessment of the consistency of medicinal chemists in reviewing sets of compounds
-
Lajiness, M. S.; Maggiora, G. M.; Shanmugasundaram, V. Assessment of the consistency of medicinal chemists in reviewing sets of compounds J. Med. Chem. 2004, 47, 4891-4896
-
(2004)
J. Med. Chem.
, vol.47
, pp. 4891-4896
-
-
Lajiness, M.S.1
Maggiora, G.M.2
Shanmugasundaram, V.3
-
38
-
-
79952115494
-
Similarity searching using 2D structural fingerprints
-
Willett, P. Similarity searching using 2D structural fingerprints Methods Mol. Biol. 2011, 672, 133-158
-
(2011)
Methods Mol. Biol.
, vol.672
, pp. 133-158
-
-
Willett, P.1
-
39
-
-
54249169660
-
Bit silencing in fingerprints enables the derivation of compound class-directed similarity metrics
-
Wang, Y.; Bajorath, J. Bit silencing in fingerprints enables the derivation of compound class-directed similarity metrics J. Chem. Inf. Model. 2008, 48, 1754-1759
-
(2008)
J. Chem. Inf. Model.
, vol.48
, pp. 1754-1759
-
-
Wang, Y.1
Bajorath, J.2
-
40
-
-
34247250736
-
Analysis of a high-throughput screening data set using potency-scaled molecular similarity algorithms
-
Vogt, I.; Bajorath, J. Analysis of a high-throughput screening data set using potency-scaled molecular similarity algorithms J. Chem. Inf. Model. 2007, 47, 367-375
-
(2007)
J. Chem. Inf. Model.
, vol.47
, pp. 367-375
-
-
Vogt, I.1
Bajorath, J.2
-
41
-
-
0043201432
-
Profile scaling increases the similarity search performance of molecular fingerprints containing numerical descriptors and structural keys
-
Xue, L.; Godden, J. W.; Stahura, F. L.; Bajorath, J. Profile scaling increases the similarity search performance of molecular fingerprints containing numerical descriptors and structural keys J. Chem. Inf. Comput. Sci. 2003, 43, 1218-1225
-
(2003)
J. Chem. Inf. Comput. Sci.
, vol.43
, pp. 1218-1225
-
-
Xue, L.1
Godden, J.W.2
Stahura, F.L.3
Bajorath, J.4
-
42
-
-
0001232509
-
On the Properties of Bit String-Based Measures of Chemical Similarity
-
Flower, D. R. On the Properties of Bit String-Based Measures of Chemical Similarity J. Chem. Inf. Comput. Sci. 1998, 38, 379-386
-
(1998)
J. Chem. Inf. Comput. Sci.
, vol.38
, pp. 379-386
-
-
Flower, D.R.1
-
43
-
-
80052841737
-
A quality alert and call for improved curation of public chemistry databases
-
Williams, A. J.; Ekins, S. A quality alert and call for improved curation of public chemistry databases Drug Discovery Today 2011, 16, 747-750
-
(2011)
Drug Discovery Today
, vol.16
, pp. 747-750
-
-
Williams, A.J.1
Ekins, S.2
|