메뉴 건너뛰기




Volumn 809, Issue , 2012, Pages 105-120

Two-step cross-linking for analysis of protein-chromatin interactions

Author keywords

Chromatin immunoprecipitation; Next generation sequencing; Nuclear factor B; Polymerase chain reaction

Indexed keywords

HISTONE; IMMUNOGLOBULIN ENHANCER BINDING PROTEIN; RNA POLYMERASE II; STAT3 PROTEIN;

EID: 84555187895     PISSN: 10643745     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-1-61779-376-9_7     Document Type: Article
Times cited : (102)

References (10)
  • 1
    • 0033529565 scopus 로고    scopus 로고
    • Twenty-five years of the nucleosome, fundamental particle of the eukaryote chromosome
    • DOI 10.1016/S0092-8674(00)81958-3
    • Kornberg RD., and Lorch, Y. (1999) Twenty fi ve years of the nucleosome, fundamental particle of the eukaryote chromosome. Cell 98 :285-294. (Pubitemid 29380564)
    • (1999) Cell , vol.98 , Issue.3 , pp. 285-294
    • Kornberg, R.D.1    Lorch, Y.2
  • 2
    • 33644873467 scopus 로고    scopus 로고
    • Two-step cross-linking method for identifi cation of NF- B gene network by chromatin immunoprecipitation
    • Nowak, DE., Tian, B., and Brasier, A.R. (2005) Two-step cross-linking method for identifi cation of NF- B gene network by chromatin immunoprecipitation. Biotechniques 39 :715-725.
    • (2005) Biotechniques , vol.39 , pp. 715-725
    • Nowak, D.E.1    Tian, B.2    Brasier, A.R.3
  • 3
    • 33644530060 scopus 로고    scopus 로고
    • A hyper-dynamic equilibrium between promoter-bound and nucleoplasmic dimers controls NF-κB-dependent gene activity
    • DOI 10.1038/sj.emboj.7600977, PII 7600977
    • Bosisio, D, Marazzi, I., Agresti, A., Shimizu, N., Bianchi, M.E., and Natoli, G. (2006) A hyperdynamic equilibrium between promoter-bound and nucleoplasmic dimers controls NF-Bdependent gene activity. EMBO J 25 :798-810. (Pubitemid 43292441)
    • (2006) EMBO Journal , vol.25 , Issue.4 , pp. 798-810
    • Bosisio, D.1    Marazzi, I.2    Agresti, A.3    Shimizu, N.4    Bianchi, M.E.5    Natoli, G.6
  • 4
    • 44349176408 scopus 로고    scopus 로고
    • 276 phosphorylation is required for activation of a subset of NF-κB-dependent genes by recruiting cyclin-dependent kinase 9/cyclin t1 complexes
    • DOI 10.1128/MCB.01152-07
    • Nowak, DE., Tian, B., Jamaluddin, M., Boldogh, I., Vergara,L. A., Choudhary, S., and Brasier, A.R. (2008) RelA Ser276 phosphorylation is required for activation of a subset of NF-Bdependent genes by recruiting cyclin-dependent kinase 9/cyclin T1 complexes. Mol Cell Biol 28 :3623-3638. (Pubitemid 351732900)
    • (2008) Molecular and Cellular Biology , vol.28 , Issue.11 , pp. 3623-3638
    • Nowak, D.E.1    Tian, B.2    Jamaluddin, M.3    Boldogh, I.4    Vergara, L.A.5    Choudhary, S.6    Brasier, A.R.7
  • 5
    • 37549068947 scopus 로고    scopus 로고
    • The functional role of an IL-6 inducible CDK9- STAT3 complex in human fi brinogen gene expression
    • Hou, T, Ray, S., and Brasier, A.R. (2007) The functional role of an IL-6 inducible CDK9- STAT3 complex in human fi brinogen gene expression. J. Biol. Chem. 282 :37091-37102.
    • (2007) J. Biol. Chem. , vol.282 , pp. 37091-37102
    • Hou, T.1    Ray, S.2    Brasier, A.R.3
  • 6
    • 77952746665 scopus 로고    scopus 로고
    • Regulation of hepatic six transmembrane epithelial antigen of prostate 4 (STEAP4) expression by STAT3 and CCAAT/enhancer-binding protein
    • Ramadoss, P, Chiappini, F., Bilban, M., and Hollenberg,A.N. (2010) Regulation of hepatic six transmembrane epithelial antigen of prostate 4 (STEAP4) expression by STAT3 and CCAAT/enhancer-binding protein. J. Biol. Chem. 285 :16453-16466.
    • (2010) J. Biol. Chem. , vol.285 , pp. 16453-16466
    • Ramadoss, P.1    Chiappini, F.2    Bilban, M.3    Hollenberg, A.N.4
  • 7
    • 34250159524 scopus 로고    scopus 로고
    • Genome-wide mapping of in vivo protein-DNA interactions
    • DOI 10.1126/science.1141319
    • Johnson, DS., Mortazavi, A., Myers, R.M., and Wold,B. (2007) Genome-wide mapping of in vivo protein-DNA interactions. Science 316 :1497-1502. (Pubitemid 46906620)
    • (2007) Science , vol.316 , Issue.5830 , pp. 1497-1502
    • Johnson, D.S.1    Mortazavi, A.2    Myers, R.M.3    Wold, B.4
  • 8
    • 34047198759 scopus 로고    scopus 로고
    • In vivo dual crosslinking for identifi cation of indirect DNAassociate proteins by chromatin Immunoprecipitation
    • Zeng, PY., Vakoc, C.R., Chen, Z.-C., Blobel, G.A., and Berger, S.L. (2006) In vivo dual crosslinking for identifi cation of indirect DNAassociate proteins by chromatin Immunoprecipitation. Biotechniques 41 :694698.
    • (2006) Biotechniques , vol.41 , pp. 694698
    • Zeng, P.Y.1    Vakoc, C.R.2    Chen, Z.-C.3    Blobel, G.A.4    Berger, S.L.5
  • 9
    • 77954169130 scopus 로고    scopus 로고
    • ChIP on Chip: Surprising results are often artifacts
    • Waldminhaus, T, and Skarstad, K. (2010) ChIP on Chip: surprising results are often artifacts. BMC Genomics 11 :414.
    • (2010) BMC Genomics , vol.11 , pp. 414
    • Waldminhaus, T.1    Skarstad, K.2
  • 10
    • 67649834440 scopus 로고    scopus 로고
    • ChIP-seq: Using high-throughput sequencing to discover protein-DNA interactions
    • Schmidt D, Wilson, M.D., Spyrou, C., Brown, G.D., Hadfi eld, J., and Odom, D.T. (2009) ChIP-seq: using high-throughput sequencing to discover protein-DNA interactions. Methods 48 :240-248.
    • (2009) Methods , vol.48 , pp. 240-248
    • Schmidt, D.1    Wilson, M.D.2    Spyrou, C.3    Brown, G.D.4    Hadfi Eld, J.5    Odom, D.T.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.