Nucleus-localized antisense small RNAs with 5′-polyphosphate termini regulate long term transcriptional gene silencing in Entamoeba histolytica G3 strain

Journal of Biological Chemistry

Volumn 286, Issue 52, 2011, Pages 44467-44479

  Zhang, Hanbang ^a   Alramini, Hussein ^a   Tran, Vy ^a   Singh, Upinder ^a  

^a STANFORD UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ANTISENSE; ARGONAUTE PROTEINS; CHROMATIN IMMUNOPRECIPITATION ASSAY; CHROMATIN MODIFICATION; ENTAMOEBA HISTOLYTICA; FLUORESCENCE IN SITU HYBRIDIZATION; GENE SILENCING; HISTONE H3; IMMUNOFLUORESCENCE ANALYSIS; IMMUNOPRECIPITATIONS; PARASITE-; POLYPHOSPHATES; PROTOZOAN PARASITES; SMALL RNA; TRANSCRIPTIONAL GENE SILENCING; TRANSCRIPTIONAL SILENCING;

FLUORESCENCE; FLUORESCENCE MICROSCOPY; GENETIC ENGINEERING; RNA;

GENES;

5' POLYPHOSPHATE ANTISENSE SMALL RNA; ARGONAUTE 2 PROTEIN; COMPLEMENTARY RNA; HISTONE H3; NUCLEOTIDE; UNCLASSIFIED DRUG;

AMOEBAPORE A GENE; ARTICLE; CELL NUCLEUS; CHROMATIN IMMUNOPRECIPITATION; CONTROLLED STUDY; ENTAMOEBA HISTOLYTICA; FLUORESCENCE IN SITU HYBRIDIZATION; GENE; GENE LOCUS; GENE SILENCING; IMMUNOFLUORESCENCE TEST; MOLECULAR SIZE; NONHUMAN; PRIORITY JOURNAL; PROTEIN LOCALIZATION; PROTEIN MODIFICATION; RNA INTERFERENCE; SIGNAL TRANSDUCTION; TRANSCRIPTION REGULATION; TYPE STRAIN;

CELL NUCLEUS; ENTAMOEBA HISTOLYTICA; GENE SILENCING; POLYPHOSPHATES; RNA, PROTOZOAN; RNA, SMALL INTERFERING; TRANSCRIPTION, GENETIC;

EID: 84455172966     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M111.278184     Document Type: Article

References (48)

1. Cerutti, H., and Casas-Mollano, J. A. (2006) Curr. Genet. 50, 81-99
2. Nowotny, M., and Yang, W. (2009) Curr. Opin. Struct. Biol. 19, 286-293
3. Chapman, E. J., and Carrington, J. C. (2007) Nat. Rev. Genet. 8, 884-896
4. Krol, J., Loedige, I., and Filipowicz, W. (2010) Nat. Rev. Genet. 11, 597-610
5. Moazed, D. (2009) Nature 457, 413-420
6. Djupedal, I., and Ekwall, K. (2009) Cell Res. 19, 282-295
7. Verdel, A., and Moazed, D. (2005) FEBS Lett. 579, 5872-5878
8. Pikaard, C. S., Haag, J. R., Ream, T., and Wierzbicki, A. T. (2008) Trends Plant Sci. 13, 390-397
9. Yin, H., and Lin, H. (2007) Nature 450, 304-308
10. Grishok, A., Sinskey, J. L., and Sharp, P. A. (2005) Genes Dev. 19, 683-696
11. Hawkins, P. G., Santoso, S., Adams, C., Anest, V., and Morris, K. V. (2009) Nucleic Acids Res. 37, 2984-2995
12. Suzuki, K., and Kelleher, A. D. (2009) Curr. Top. Med. Chem. 9, 1079-1087
13. Pak, J., and Fire, A. (2007) Science 315, 241-244
14. Gent, J. I., Lamm, A. T., Pavelec, D. M., Maniar, J. M., Parameswaran, P., Tao, L., Kennedy, S., and Fire, A. Z. (2010) Mol. Cell 37, 679-689
15. Maniar, J. M., and Fire, A. Z. (2011) Curr. Biol. 21, 449-459
16. Chen, X. S., Collins, L. J., Biggs, P. J., and Penny, D. (2009) Genome Biol. Evol. 1, 165-175
17. Ullu, E., Tschudi, C., and Chakraborty, T. (2004) Cell Microbiol. 6, 509-519
18. Zhang, H., Pompey, J. M., and Singh, U. (2011) Future Microbiol. 6, 103-117
19. Atayde, V. D., Tschudi, C., and Ullu, E. (2011) Trends Parasitol. 27, 321-327
20. Zhang, H., Ehrenkaufer, G. M., Pompey, J. M., Hackney, J. A., and Singh, U. (2008) PLoS Pathog. 4, e1000219
21. World Health Organization (1997) Bull. World Health Organ. 75, 291-294
22. Bracha, R., Nuchamowitz, Y., and Mirelman, D. (2003) Eukaryotic Cell 2, 295-305
23. Bracha, R., Nuchamowitz, Y., Anbar, M., and Mirelman, D. (2006) PLoS Pathog. 2, e48
24. Anbar, M., Bracha, R., Nuchamowitz, Y., Li, Y., Florentin, A., and Mirelman, D. (2005) Eukaryotic Cell 4, 1775-1784
25. Bracha, R., Nuchamowitz, Y., Wender, N., and Mirelman, D. (2007) Eukaryotic Cell 6, 1758-1765
26. Baxt, L. A., Rastew, E., Bracha, R., Mirelman, D., and Singh, U. (2010) Eukaryotic Cell 9, 1283-1293
27. Huguenin, M., Bracha, R., Chookajorn, T., and Mirelman, D. (2010) Parasitology 137, 619-627
28. Diamond, L. S., Harlow, D. R., and Cunnick, C. C. (1978) Trans. R. Soc. Trop. Med. Hyg. 72, 431-432
29. MacFarlane, R. C., and Singh, U. (2006) Infect. Immun. 74, 340-351
30. Lu, J., and Tsourkas, A. (2009) Nucleic Acids Res. 37, e100
31. Silahtaroglu, A. N. (2010) Methods Mol. Biol. 659, 165-171
32. Pall, G. S., and Hamilton, A. J. (2008) Nat. Protoc. 3, 1077-1084
33. Gilchrist, C. A., Leo, M., Line, C. G., Mann, B. J., and Petri, W. A., Jr. (2003) J. Biol. Chem. 278, 4646-4653
34. Chookajorn, T., Dzikowski, R., Frank, M., Li, F., Jiwani, A. Z., Hartl, D. L., and Deitsch, K. W. (2007) Proc. Natl. Acad. Sci. U. S. A. 104, 899-902
35. Ehrenkaufer, G. M., Hackney, J. A., and Singh, U. (2009) Cell. Microbiol. 11, 898-910
36. MacFarlane, R. C., and Singh, U. (2007) Eukaryotic Cell 6, 2139-2146
37. Hutvagner, G., and Simard, M. J. (2008) Nat. Rev. Mol. Cell Biol. 9, 22-32
38. Ehrenkaufer, G. M., Haque, R., Hackney, J. A., Eichinger, D. J., and Singh, U. (2007) Cell Microbiol. 9, 1426-1444
39. Li, C. F., Pontes, O., El-Shami, M., Henderson, I. R., Bernatavichute, Y. V., Chan, S. W., Lagrange, T., Pikaard, C. S., and Jacobsen, S. E. (2006) Cell 126, 93-106
40. Brower-Toland, B., Findley, S. D., Jiang, L., Liu, L., Yin, H., Dus, M., Zhou, P., Elgin, S. C., and Lin, H. (2007) Genes Dev. 21, 2300-2311
41. Buker, S. M., Iida, T., Bühler, M., Villén, J., Gygi, S. P., Nakayama, J., and Moazed, D. (2007) Nat. Struct. Mol. Biol. 14, 200-207
42. Guang, S., Bochner, A. F., Pavelec, D. M., Burkhart, K. B., Harding, S., Lachowiec, J., and Kennedy, S. (2008) Science 321, 537-541
43. Verdel, A., Vavasseur, A., Le Gorrec, M., and Touat-Todeschini, L. (2009) Int. J. Dev. Biol. 53, 245-257
44. Fisher, O., Siman-Tov, R., and Ankri, S. (2004) Nucleic Acids Res. 32, 287-297
45. Lavi, T., Isakov, E., Harony, H., Fisher, O., Siman-Tov, R., and Ankri, S. (2006) Mol. Microbiol. 62, 1373-1386
46. Ramakrishnan, G., Gilchrist, C. A., Musa, H., Torok, M. S., Grant, P. A., Mann, B. J., and Petri, W. A., Jr. (2004) Mol. Biochem. Parasitol. 138, 205-216
47. Claycomb, J. M., Batista, P. J., Pang, K. M., Gu, W., Vasale, J. J., van Wolfswinkel, J. C., Chaves, D. A., Shirayama, M., Mitani, S., Ketting, R. F., Conte, D., Jr., and Mello, C. C. (2009) Cell 139, 123-134
48. Gu, W., Shirayama, M., Conte, D., Jr., Vasale, J., Batista, P. J., Claycomb, J. M., Moresco, J. J., Youngman, E. M., Keys, J., Stoltz, M. J., Chen, C. C., Chaves, D. A., Duan, S., Kasschau, K. D., Fahlgren, N., Yates, J. R., 3rd, Mitani, S., Carrington, J. C., and Mello, C. C. (2009) Mol. Cell 36, 231-244