메뉴 건너뛰기




Volumn 332, Issue 2, 2004, Pages 238-244

Using artificially generated spectral data to improve protein secondary structure prediction from Fourier transform infrared spectra of proteins

Author keywords

FTIR; Neural networks; Protein; Secondary structure prediction; Spectroscopy

Indexed keywords

BAYESIAN NETWORKS; FORECASTING; MAXIMUM LIKELIHOOD ESTIMATION; NEURAL NETWORKS; PROTEINS; SPECTROSCOPY;

EID: 8444246271     PISSN: 00032697     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ab.2004.06.030     Document Type: Article
Times cited : (50)

References (15)
  • 1
    • 0032818805 scopus 로고    scopus 로고
    • FTIR spectroscopic characterization of protein structure in aqueous and non-aqueous media
    • P.I. Haris, and F. Severcan FTIR spectroscopic characterization of protein structure in aqueous and non-aqueous media J. Mol. Catal. B-Enzymatic 7 1999 207 221
    • (1999) J. Mol. Catal. B-Enzymatic , vol.7 , pp. 207-221
    • Haris, P.I.1    Severcan, F.2
  • 2
    • 0022691315 scopus 로고
    • Examination of the secondary structure of proteins by deconvolved FTIR spectra
    • D.M. Byler, and H. Susi Examination of the secondary structure of proteins by deconvolved FTIR spectra Biopolymers 25 1986 469 487
    • (1986) Biopolymers , vol.25 , pp. 469-487
    • Byler, D.M.1    Susi, H.2
  • 3
    • 0024997389 scopus 로고
    • Determination of the secondary structure content of proteins in aqueous solutions from their Amide-I and Amide-II infrared bands: Comparison between classical and partial least-squares methods
    • F. Dousseau, and M. Pezolet Determination of the secondary structure content of proteins in aqueous solutions from their Amide-I and Amide-II infrared bands: comparison between classical and partial least-squares methods Biochemistry 29 1990 8771 8779
    • (1990) Biochemistry , vol.29 , pp. 8771-8779
    • Dousseau, F.1    Pezolet, M.2
  • 4
    • 0024999461 scopus 로고
    • Determination of protein secondary structure using factor-analysis of infrared spectra
    • D.C. Lee, P.I. Haris, D. Chapman, and C.R. Mitchell Determination of protein secondary structure using factor-analysis of infrared spectra Biochemistry 29 1990 9185 9193
    • (1990) Biochemistry , vol.29 , pp. 9185-9193
    • Lee, D.C.1    Haris, P.I.2    Chapman, D.3    Mitchell, C.R.4
  • 5
    • 0033081266 scopus 로고    scopus 로고
    • Novel matrix descriptor for secondary structure segments in proteins: Demonstration of predictability from circular dichroism spectra
    • P. Pancoska, V. Janota, and T.A. Keiderling Novel matrix descriptor for secondary structure segments in proteins: demonstration of predictability from circular dichroism spectra Anal. Biochem. 267 1999 72 83
    • (1999) Anal. Biochem. , vol.267 , pp. 72-83
    • Pancoska, P.1    Janota, V.2    Keiderling, T.A.3
  • 6
    • 0035972696 scopus 로고    scopus 로고
    • Estimation of protein secondary structure from FTIR spectra using neural networks
    • M. Severcan, F. Severcan, and P.I. Haris Estimation of protein secondary structure from FTIR spectra using neural networks J. Mol. Struct. 565-566 2001 383 387
    • (2001) J. Mol. Struct. , vol.565-566 , pp. 383-387
    • Severcan, M.1    Severcan, F.2    Haris, P.I.3
  • 7
    • 0036360119 scopus 로고    scopus 로고
    • An alternative method for rapid quantification of protein secondary structure from FTIR spectra using neural networks
    • J.A. Hering, P.R. Innocent, and P.I. Haris An alternative method for rapid quantification of protein secondary structure from FTIR spectra using neural networks Spectroscopy 16 2002 53 69
    • (2002) Spectroscopy , vol.16 , pp. 53-69
    • Hering, J.A.1    Innocent, P.R.2    Haris, P.I.3
  • 8
    • 0035997270 scopus 로고    scopus 로고
    • Atomic amide I frequency selection for rapid quantification of protein secondary structure from Fourier transform infrared spectra of proteins
    • J.A. Hering, P.R. Innocent, and P.I. Haris Atomic amide I frequency selection for rapid quantification of protein secondary structure from Fourier transform infrared spectra of proteins Proteomics 2 2002 839 849
    • (2002) Proteomics , vol.2 , pp. 839-849
    • Hering, J.A.1    Innocent, P.R.2    Haris, P.I.3
  • 9
    • 0041562558 scopus 로고    scopus 로고
    • Fourier transform infrared spectroscopy suggests unfolding of loop structures precedes complete unfolding of pig citrate synthase
    • F. Severcan, and P.I. Haris Fourier transform infrared spectroscopy suggests unfolding of loop structures precedes complete unfolding of pig citrate synthase Biopolymers 69 2003 440 447
    • (2003) Biopolymers , vol.69 , pp. 440-447
    • Severcan, F.1    Haris, P.I.2
  • 11
    • 0001025418 scopus 로고
    • Bayesian interpolation
    • D.J.C. MacKay Bayesian interpolation Neural Comput. 4 1992 415 447
    • (1992) Neural Comput. , vol.4 , pp. 415-447
    • MacKay, D.J.C.1
  • 13
    • 0000408944 scopus 로고
    • Quantifying a critical training set size for generalization and overfitting using teacher neural networks
    • M. Marinaro, P. Morasso (Eds.), London, GB 1
    • R. Lange, R. Maenner, Quantifying a critical training set size for generalization and overfitting using teacher neural networks, in: M. Marinaro, P. Morasso (Eds.), Proceedings of the International Conference on Artificial Neural Networks (ICANN), London, GB 1, 1994 pp. 497-500
    • (1994) Proceedings of the International Conference on Artificial Neural Networks (ICANN) , pp. 497-500
    • Lange, R.1    Maenner, R.2
  • 14
    • 0017701604 scopus 로고
    • Automatic identification of secondary structure in globular proteins
    • M. Levitt, and J. Greer Automatic identification of secondary structure in globular proteins J. Mol. Biol. 114 1977 181 239
    • (1977) J. Mol. Biol. , vol.114 , pp. 181-239
    • Levitt, M.1    Greer, J.2
  • 15
    • 0020997912 scopus 로고
    • Dictionary of protein secondary structure-pattern recognition of hydrogen-bonded and geometrical features
    • W. Kabsch, and C. Sander Dictionary of protein secondary structure-pattern recognition of hydrogen-bonded and geometrical features Biopolymers 22 1983 2577 2637
    • (1983) Biopolymers , vol.22 , pp. 2577-2637
    • Kabsch, W.1    Sander, C.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.