Novel matrix descriptor for secondary structure segments in proteins: Demonstration of predictability from circular dichroism spectra

Analytical Biochemistry

Volumn 267, Issue 1, 1999, Pages 72-83

  Pancoska, Petr ^a,b,c   Janota, Vit ^b,c   Keiderling, Timothy A ^a  

^a UNIVERSITY OF ILLINOIS AT CHICAGO   (United States)

^b Theor Comp Sci and Applications   (Czech Republic)

^c CHARLES UNIVERSITY   (Czech Republic)

Author keywords

[No Author keywords available]

Indexed keywords

DICHROISM; FORECASTING; NEURAL NETWORKS; PROTEINS; RELIABILITY ANALYSIS;

CIRCULAR DICHROISM SPECTRA; ELECTRONIC CIRCULAR DICHROISM; FOURIER TRANSFORM INFRARED SPECTRA; FRACTIONAL CONCENTRATION; NOVEL NEURAL NETWORK; SECONDARY STRUCTURES; STRUCTURAL DESCRIPTOR; VIBRATIONAL CIRCULAR DICHROISM SPECTRUM;

MATRIX ALGEBRA;

PROTEIN;

ARTICLE; CIRCULAR DICHROISM; ELECTRONICS; INFRARED SPECTROSCOPY; PRIORITY JOURNAL; PROTEIN FOLDING; PROTEIN SECONDARY STRUCTURE; RELIABILITY; X RAY ANALYSIS;

EID: 0033081266     PISSN: 00032697     EISSN: None     Source Type: Journal    
DOI: 10.1006/abio.1998.2960     Document Type: Article

References (29)

1. Wu S. C., Ikeda K., Yang J. T. Biochemistry. 20:1981;560-568.
2. Yang J. T., Wu C. S. C., Martinez H. M. Methods Enzymol. 130:1986;208-269.
3. Dousseau F., Pezolet M. Biochemistry. 29:1990;8771-8779.
4. Pancoska P., Bitto E., Janota V., Keiderling T. A. Faraday Disc. 99:1994;287-310.
5. Pancoska P., Fabian H., Yoder G., Baumruk V., Keiderling T. A. Biochemistry. 35:1996;13094-13106.
6. Pancoska P., Bitto E., Janota V., Urbanova M., Gupta V. P., Keiderling T. A. Protein Sci. 42:1995;1384-1401.
7. Pancoska P., Yasui S. C., Keiderling T. A. Biochemistry. 28:1989;5917-5927.
8. Pancoska P., Yasui S. C., Keiderling T. A. Biochemistry. 30:1991;5089-5103.
9. Baumruk V., Pancoska P., Keiderling T. A. J. Mol. Biol. 259:1996;774-790.
10. Keiderling T. A., Pancoska P. Biomolecular Spectroscopy Part B. 1993;Wiley, Chichester. p. 267-315.
11. Pancoska P., Keiderling T. A. Biochemistry. 30:1991;6885-6895.
12. Pribic R., van Stokkum I. H. M., Chapman D., Haris P. I., Bloemendal M. Anal. Biochem. 214:1993;366-378.
13. Hennessey J. P. Jr., Johnson W. C. Jr. Biochemistry. 20:1981;1085-1094.
14. Kabsch W., Sander C. Biopolymers. 22:1983;2577-2637.
15. van Stokkum I. H. M., Spoelder H. J. W., Bloemendal M., van Grundelle R., Groen F. C. A. Anal. Biochem. 191:1990;110-118.
16. Fabian H., Schultz C., Naumann D., Landt O., Hahn U., Saenger W. J. Mol. Biol. 232:1993;967-981.
17. Fabian H., Schultz C., Backmann J., Hahn U., Zinger W., Mantsch H. H., Naumann D. Biochemistry. 33:1994;10725-10730.
18. Skala L., Pancoska P. Chem. Physiol. 125:1988;21-30.
19. Janota, V. 1993.
20. Hobohm U., Sharf M., Sander C. Protein Sci. 1:1992;409-417.
21. Hobohm U., Sander C. Protein Sci. 3:1994;522-524.
22. Johnson W. C. Proteins. 7:1990;205-214.
23. Manavalan P., Johnson W. C. Anal. Biochem. 167:1987;26-85.
24. Pancoska P., Janota V., Keiderling T. A. Appl. Spectrosc. 50:1996;658-668.
25. Cabiaux V., Oberg K. A., Pancoska P., Walz T., Agre P., Engel A. Biophys. J. 73:1997;406-417.
26. Sreerama N., Woody R. W. Anal. Biochem. 209:1993;32-44.
27. Sreerama N., Woody R. W. Biochemistry. 33:1994;10022-10025.
28. Sreerama N., Woody R. W. J. Mol. Biol. 242:1994;497-507.
29. Walz T., Hirai T., Murata K., Heymann J. B., Mitsuoka K., Fujiyoshi Y., Smith B. L., Agre P., Engel A. Nature. 387:1997;624-627.