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Volumn 135, Issue 22, 2011, Pages

Critical behavior of megabase-size DNA toward the transition into a compact state

Author keywords

[No Author keywords available]

Indexed keywords

AFM OBSERVATION; BULK SOLUTIONS; CRITICAL BEHAVIOR; DNA SEGMENTS; FOLDING TRANSITION; HIGHER-ORDER STRUCTURE; INTERMEDIATE STATE; PARALLEL ORDERING; SINGLE-MOLECULE OBSERVATION; SPERMIDINE; TWO-DIMENSIONAL SURFACE;

EID: 83755220627     PISSN: 00219606     EISSN: None     Source Type: Journal    
DOI: 10.1063/1.3666845     Document Type: Article
Times cited : (18)

References (67)
  • 1
    • 0032518149 scopus 로고    scopus 로고
    • Surface-directed DNA condensation in the absence of soluble multivalent cations
    • DOI 10.1093/nar/26.2.588
    • Y. Fang and J. H. Hoh, Nucleic Acids Res. 26, 588 (1998). 10.1093/nar/26.2.588 (Pubitemid 28291589)
    • (1998) Nucleic Acids Research , vol.26 , Issue.2 , pp. 588-593
    • Fang, Y.1    Hoh, J.H.2
  • 4
    • 0141627565 scopus 로고    scopus 로고
    • Giant DNA molecules exhibit on/off switching of transcriptional activity through conformational transition
    • DOI 10.1016/S0301-4622(03)00138-8
    • K. Tsumoto, F. Luckel, and K. Yoshikawa, Biophys. Chem. 106, 23 (2003). 10.1016/S0301-4622(03)00138-8 (Pubitemid 37152519)
    • (2003) Biophysical Chemistry , vol.106 , Issue.1 , pp. 23-29
    • Tsumoto, K.1    Luckel, F.2    Yoshikawa, K.3
  • 5
    • 20844436567 scopus 로고    scopus 로고
    • All-or-none switching of transcriptional activity on single DNA molecules caused by a discrete conformational transition
    • DOI 10.1063/1.1937990, 223901
    • A. Yamada, K. Kubo, T. Nakai, K. Yoshikawa, and K. Tsumoto, Appl. Phys. Lett. 86, (2005). 10.1063/1.1937990 (Pubitemid 40861639)
    • (2005) Applied Physics Letters , vol.86 , Issue.22 , pp. 1-3
    • Yamada, A.1    Kubo, K.2    Nakai, T.3    Yoshikawa, K.4    Tsumoto, K.5
  • 11
    • 0020212742 scopus 로고
    • 10.1002/bi360211104
    • C. B. Post and B. H. Zimm, Biopolymers 21, 2123 (1982). 10.1002/bip.360211104
    • (1982) Biopolymers , vol.21 , pp. 2123
    • Post, C.B.1    Zimm, B.H.2
  • 12
    • 0026253815 scopus 로고
    • 10.1002/bi360311305
    • V. A. Bloomfield, Biopolymers 31, 1471 (1991). 10.1002/bip.360311305
    • (1991) Biopolymers , vol.31 , pp. 1471
    • Bloomfield, V.A.1
  • 16
    • 0031447208 scopus 로고    scopus 로고
    • 10.1002/(SICI)1097-0282(1997)44:3<269::AID-BIP63.0.CO;2-T
    • V. A. Bloomfield, Biopolymers 44 (3), 269 (1997). 10.1002/(SICI)1097- 0282(1997)44:3<269::AID-BIP63.0.CO;2-T
    • (1997) Biopolymers , vol.44 , Issue.3 , pp. 269
    • Bloomfield, V.A.1
  • 19
    • 2442544456 scopus 로고    scopus 로고
    • Formation of Native-like Mammalian Sperm Cell Chromatin with Folded Bull Protamine
    • DOI 10.1074/jbc.M312777200
    • I. D. Vilfan, C. C. Conwell, and N. V. Hud, J. Biol. Chem. 279 (19), 20088 (2004). 10.1074/jbc.M312777200 (Pubitemid 38623453)
    • (2004) Journal of Biological Chemistry , vol.279 , Issue.19 , pp. 20088-20095
    • Vilfan, I.D.1    Conwell, C.C.2    Hud, N.V.3
  • 20
    • 14044271924 scopus 로고    scopus 로고
    • Toroidal DNA condensates: Unraveling the fine structure and the role of nucleation in determining size
    • DOI 10.1146/annurev.biophys.34.040204.144500
    • N. V. Hud and I. D. Vilfan, Annu. Rev. Biophys. Biomol. Struct. 34, 295 (2005). 10.1146/annurev.biophys.34.040204.144500 (Pubitemid 40847727)
    • (2005) Annual Review of Biophysics and Biomolecular Structure , vol.34 , pp. 295-318
    • Hud, N.V.1    Vilfan, I.D.2
  • 21
    • 33745610914 scopus 로고    scopus 로고
    • Time study of DNA condensate morphology: Implications regarding the nucleation, growth, and equilibrium populations of toroids and rods
    • DOI 10.1021/bi060396c
    • I. D. Vilfan, C. C. Conwell, T. Sarkar, and N. V. Hud, Biochemistry 45, 8174 (2006). 10.1021/bi060396c (Pubitemid 43993238)
    • (2006) Biochemistry , vol.45 , Issue.26 , pp. 8174-8183
    • Vilfan, I.D.1    Conwell, C.C.2    Sarkar, T.3    Hud, N.V.4
  • 22
    • 39149124468 scopus 로고    scopus 로고
    • Interplay of ion binding and attraction in DNA condensed by multivalent cations
    • DOI 10.1093/nar/gkm1038
    • B. A. Todd and D. C. Rau, Nucleic Acids Res. 36, 501 (2008). 10.1093/nar/gkm1038 (Pubitemid 351250441)
    • (2008) Nucleic Acids Research , vol.36 , Issue.2 , pp. 501-510
    • Todd, B.A.1    Rau, D.C.2
  • 25
    • 0021014567 scopus 로고
    • Ion competition and micrococcal nuclease digestion studies of spermidine-condensed calf thymus DNA. Evidence for torus organization by circumferential DNA wrapping
    • DOI 10.1016/0167-4781(83)90146-X
    • K. A. Marx and T. C. Reynolds, Biochim. Biophys. Acta 741, 279 (1983). 10.1016/0167-4781(83)90146-X (Pubitemid 14187947)
    • (1983) Biochimica et Biophysica Acta - Gene Structure and Expression , vol.741 , Issue.3 , pp. 279-287
    • Marx, K.A.1    Reynolds, T.C.2
  • 26
    • 0021759018 scopus 로고
    • 10.1021/bi00316a002
    • D. Porschke, Biochemistry 23 (21), 4821 (1984). 10.1021/bi00316a002
    • (1984) Biochemistry , vol.23 , Issue.21 , pp. 4821
    • Porschke, D.1
  • 27
    • 0033574205 scopus 로고    scopus 로고
    • Cyclization of globular DNA. Implications for DNA-DNA interactions in vivo
    • DOI 10.1021/bi982770h
    • D. Jary and J. L. Sikorav, Biochemistry 38, 3223 (1999). 10.1021/bi982770h (Pubitemid 29148896)
    • (1999) Biochemistry , vol.38 , Issue.11 , pp. 3223-3227
    • Jary, D.1    Sikorav, J.-L.2
  • 28
    • 0020776498 scopus 로고
    • 10.1002/bi360220612
    • J. Widom and R. L. Baldwin, Biopolymers 22, 1595 (1983). 10.1002/bip.360220612
    • (1983) Biopolymers , vol.22 , pp. 1595
    • Widom, J.1    Baldwin, R.L.2
  • 29
    • 0021749180 scopus 로고
    • X-ray diffraction studies on cation-collapsed DNA
    • DOI 10.1016/0022-2836(84)90351-6
    • J. A. Schellman and N. Parthasarathy, J. Mol. Biol. 175, 313 (1984). 10.1016/0022-2836(84)90351-6 (Pubitemid 15241989)
    • (1984) Journal of Molecular Biology , vol.175 , Issue.3 , pp. 313-329
    • Schellman, J.A.1    Parthasarathy, N.2
  • 32
    • 0028142683 scopus 로고
    • 10.1016/S0006-3495(94)80641-1
    • C. L. Ma and V. A. Bloomfield, Biophys. J. 67, 1678 (1994). 10.1016/S0006-3495(94)80641-1
    • (1994) Biophys. J. , vol.67 , pp. 1678
    • Ma, C.L.1    Bloomfield, V.A.2
  • 35
    • 0015222984 scopus 로고
    • 10.1016/0022-2836(71)90102-1
    • D. E. Olins and A. L. Olins, J. Mol. Biol. 57, 437 (1971). 10.1016/0022-2836(71)90102-1
    • (1971) J. Mol. Biol. , vol.57 , pp. 437
    • Olins, D.E.1    Olins, A.L.2
  • 36
    • 0022470051 scopus 로고
    • 10.1016/0022-2836(86)90335-9
    • D. J. Clark and J. O. Thomas, J. Mol. Biol. 187, 569 (1986). 10.1016/0022-2836(86)90335-9
    • (1986) J. Mol. Biol. , vol.187 , pp. 569
    • Clark, D.J.1    Thomas, J.O.2
  • 40
    • 0028922318 scopus 로고
    • 10.1016/0014-5793(95)00190-K
    • Y. Yoshikawa and K. Yoshikawa, FEBS Lett. 361, 277 (1995). 10.1016/0014-5793(95)00190-K
    • (1995) FEBS Lett. , vol.361 , pp. 277
    • Yoshikawa, Y.1    Yoshikawa, K.2
  • 51
    • 0037163851 scopus 로고    scopus 로고
    • Folding transition of large DNA completely inhibits the action of a restriction endonuclease as revealed by single-chain observation
    • DOI 10.1016/S0014-5793(02)03448-8, PII S0014579302034488
    • H. Oana, K. Tsumoto, Y. Yoshikawa, and K. Yoshikawa, FEBS Lett. 530, 143 (2002). 10.1016/S0014-5793(02)03448-8 (Pubitemid 35248201)
    • (2002) FEBS Letters , vol.530 , Issue.1-3 , pp. 143-146
    • Oana, H.1    Tsumoto, K.2    Yoshikawa, Y.3    Yoshikawa, K.4
  • 52
    • 83755208031 scopus 로고    scopus 로고
    • Rhodoligotrophos appendicifer gen. nov., sp. nov., a bacterium with projections isolated from a lake in Skarvsnes, Antartica
    • (in press)
    • W. Fukuda, K. Yamada, Y. Miyoshi, H. Okuno, H. Atomi, and T. Imanaka, " Rhodoligotrophos appendicifer gen. nov., sp. nov., a bacterium with projections isolated from a lake in Skarvsnes, Antartica.," Int. J. Syst. Evol. Microbiol. (in press).
    • Int. J. Syst. Evol. Microbiol.
    • Fukuda, W.1    Yamada, K.2    Miyoshi, Y.3    Okuno, H.4    Atomi, H.5    Imanaka, T.6
  • 54
    • 0032126485 scopus 로고    scopus 로고
    • The observation of the local ordering characteristics of spermidine-condensed DNA: Atomic force microscopy and polarizing microscopy studies
    • DOI 10.1093/nar/26.13.3228
    • Z. Lin, C. Wang, X. Z. Feng, M. Z. Liu, J. W. Li, and C. L. Bai, Nucleic Acids Res. 26, 3228 (1998). 10.1093/nar/26.13.3228 (Pubitemid 28288923)
    • (1998) Nucleic Acids Research , vol.26 , Issue.13 , pp. 3228-3234
    • Lin, Z.1    Wang, C.2    Feng, X.3    Liu, M.4    Li, J.5    Bai, C.6
  • 56
    • 0032500350 scopus 로고    scopus 로고
    • Early intermediates in spermidine-induced DNA condensation on the surface of mica
    • DOI 10.1021/ja981332v
    • Y. Fang and J. H. Hoh, J. Am. Chem. Soc. 120, 8903 (1998). 10.1021/ja981332v (Pubitemid 28449167)
    • (1998) Journal of the American Chemical Society , vol.120 , Issue.35 , pp. 8903-8909
    • Fang, Y.1    Hoh, J.H.2
  • 59
    • 84985735756 scopus 로고
    • 10.1002/bi1970.360090606
    • F. Oosawa, Biopolymers 9, 677 (1970). 10.1002/bip.1970.360090606
    • (1970) Biopolymers , vol.9 , pp. 677
    • Oosawa, F.1
  • 60
    • 0017895903 scopus 로고
    • 10.1017/S0033583500002031
    • G. S. Manning, Q. Rev. Biophys. 11, 179 (1978). 10.1017/S0033583500002031
    • (1978) Q. Rev. Biophys. , vol.11 , pp. 179
    • Manning, G.S.1
  • 62
    • 0037042614 scopus 로고    scopus 로고
    • Multiscaling in a long semiflexible polymer chain in two dimensions
    • DOI 10.1063/1.1475759
    • N. Yoshinaga, K. Yoshikawa, and S. Kidoaki, J. Chem. Phys. 116, 9926 (2002). 10.1063/1.1475759 (Pubitemid 34690643)
    • (2002) Journal of Chemical Physics , vol.116 , Issue.22 , pp. 9926-9929
    • Yoshinaga, N.1    Yoshikawa, K.2    Kidoaki, S.3
  • 66
    • 5644238147 scopus 로고    scopus 로고
    • Counterion-mediated intra-chain phase segregation on a single semiflexible polyelectrolyte chain
    • DOI 10.1209/epl/i2004-10171-0
    • T. Iwaki and K. Yoshikawa, Europhys. Lett. 68, 113 (2004). 10.1209/epl/i2004-10171-0 (Pubitemid 39375277)
    • (2004) Europhysics Letters , vol.68 , Issue.1 , pp. 113-119
    • Iwaki, T.1    Yoshikawa, K.2
  • 67
    • 0034743149 scopus 로고    scopus 로고
    • Surface biology of DNA by atomic force microscopy
    • DOI 10.1146/annurev.physchem.52.1.71
    • H. G. Hansma, Annu. Rev. Phys. Chem. 52, 71 (2001). 10.1146/annurev. physchem.52.1.71 (Pubitemid 33655117)
    • (2001) Annual Review of Physical Chemistry , vol.52 , pp. 71-92
    • Hansma, H.G.1


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