Conformational dynamics of the plug domain of the SecYEG protein-conducting channel

Journal of Biological Chemistry

Volumn 286, Issue 51, 2011, Pages 43881-43890

  Lycklama A Nijeholt, Jelger A ^a,b   Wu, Zht Cheng ^a,b   Driessen, Arnold J M ^a,b  

^a UNIVERSITY OF GRONINGEN   (Netherlands)

^b UNIVERSITY OF GRONINGEN   (Netherlands)

Author keywords

[No Author keywords available]

Indexed keywords

BOUND STATE; CONFORMATIONAL DYNAMICS; ENVIRONMENT-SENSITIVE; MEMBRANE PROTEINS; PORE REGION; PREPROTEINS; PROTEIN-CONDUCTING CHANNELS; SOLVENT EXPOSURE;

BIOLOGICAL MEMBRANES;

DYNAMICS;

MEMBRANE PROTEIN; PROTEIN SECYEG; TRANSLOCON; UNCLASSIFIED DRUG;

ARTICLE; CONFORMATIONAL TRANSITION; HYDROPHOBICITY; MEMBRANE TRANSPORT; NONHUMAN; PLUG DOMAIN; PRIORITY JOURNAL; PROTEIN BINDING; PROTEIN CONFORMATION; PROTEIN DOMAIN; PROTEIN TRANSPORT; RIBOSOME;

CELL MEMBRANE; CRYSTALLOGRAPHY, X-RAY; ESCHERICHIA COLI; ESCHERICHIA COLI PROTEINS; FLUORESCENT DYES; HYDROPHOBIC AND HYDROPHILIC INTERACTIONS; METHANOCOCCUS; MODELS, MOLECULAR; MOLECULAR CONFORMATION; PLASMIDS; PROTEIN CONFORMATION; PROTEIN STRUCTURE, SECONDARY; PROTEIN STRUCTURE, TERTIARY; PROTEIN TRANSPORT; RIBOSOMES;

EID: 83755168976     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M111.297507     Document Type: Article

References (45)

1. Driessen, A. J., and Nouwen, N. (2008) Annu. Rev. Biochem. 77, 643-667
2. Van den Berg, B., Clemons, W. M., Jr., Collinson, I., Modis, Y., Hartmann, E., Harrison, S. C., and Rapoport, T. A. (2004) Nature 427, 36-44
3. Gumbart, J., and Schulten, K. (2008) J. Gen. Physiol. 132, 709-719
4. Harris, C. R., and Silhavy, T. J. (1999) J. Bacteriol. 181, 3438-3444
5. Tam, P. C., Maillard, A. P., Chan, K. K., and Duong, F. (2005) EMBO J. 24, 3380-3388
6. Lycklama, A., Nijeholt, J. A., Bulacu, M., Marrink, S. J., and Driessen, A. J. (2010) J. Biol. Chem. 285, 23747-23754
7. Junne, T., Schwede, T., Goder, V., and Spiess, M. (2006) Mol. Biol. Cell 17, 4063-4068
8. Maillard, A. P., Lalani, S., Silva, F., Belin, D., and Duong, F. (2007) J. Biol. Chem. 282, 1281-1287
9. Li, W., Schulman, S., Boyd, D., Erlandson, K., Beckwith, J., and Rapoport, T. A. (2007) Mol. Cell 26, 511-521
10. Smith, M. A., Clemons, W. M., Jr., DeMars, C. J., and Flower, A. M. (2005) J. Bacteriol. 187, 6454-6465
11. Duong, F., and Wickner, W. (1999) EMBO J. 18, 3263-3270
12. Zhang, B., and Miller, T. F., 3rd (2010) Proc. Natl. Acad. Sci. U.S.A. 107, 5399-5404
13. Zimmer, J., Nam, Y., and Rapoport, T. A. (2008) Nature 455, 936-943
14. du Plessis, D. J., Berrelkamp, G., Nouwen, N., and Driessen, A. J. (2009) J. Biol. Chem. 284, 15805-15814
15. Egea, P. F., and Stroud, R. M. (2010) Proc. Natl. Acad. Sci. U.S.A. 107, 17182-17187
16. Tsukazaki, T., Mori, H., Fukai, S., Ishitani, R., Mori, T., Dohmae, N., Perederina, A., Sugita, Y., Vassylyev, D. G., Ito, K., and Nureki, O. (2008) Nature 455, 988-991
17. Frauenfeld, J., Gumbart, J., Sluis, E. O., Funes, S., Gartmann, M., Beatrix, B., Mielke, T., Berninghausen, O., Becker, T., Schulten, K., and Beckmann, R. (2011) Nat. Struct. Mol. Biol. 18, 614-621
18. van der Does, C., de Keyzer, J., van der Laan, M., and Driessen, A. J. (2003) Methods Enzymol. 372, 86-98
19. Cabelli, R. J., Chen, L., Tai, P. C., and Oliver, D. B. (1988) Cell 55, 683-692
20. Fekkes, P., de Wit, J. G., van der Wolk, J. P., Kimsey, H. H., Kumamoto, C. A., and Driessen, A. J. (1998) Mol. Microbiol. 29, 1179-1190
21. De Keyzer, J., Van Der Does, C., and Driessen, A. J. (2002) J. Biol. Chem. 277, 46059-46065
22. van der Sluis, E. O., Nouwen, N., and Driessen, A. J. (2002) FEBS Lett. 527, 159-165
23. Schaffitzel, C., and Ban, N. (2007) J. Struct. Biol. 158, 463-471
24. Rutkowska, A., Mayer, M. P., Hoffmann, A., Merz, F., Zachmann-Brand, B., Schaffitzel, C., Ban, N., Deuerling, E., and Bukau, B. (2008) J. Biol. Chem. 283, 4124-4132
25. Evans, M. S., Ugrinov, K. G., Frese, M. A., and Clark, P. L. (2005) Nat. Methods 2, 757-762
26. Bol, R., de Wit, J. G., and Driessen, A. J. (2007) J. Biol. Chem. 282, 29785-29793
27. Lakowicz, J. R. (1999) Principles of Fluorescence Spectroscopy, pp. 129-132, Kluwer Academic/Plenum Press, New York
28. Manting, E. H., Kaufmann, A., van der, Does, C., and Driessen, A. J. (1999) J. Biol. Chem. 274, 23868-23874
29. Osborne, R. S., and Silhavy, T. J. (1993) EMBO J. 12, 3391-3398
30. Arkowitz, R. A., Joly, J. C., and Wickner, W. (1993) EMBO J. 12, 243-253
31. Joly, J. C., and Wickner, W. (1993) EMBO J. 12, 255-263
32. Nakatogawa, H., and Ito, K. (2002) Cell 108, 629-636
33. Greenough, K. P., and Blanchard, G. J. (2006) J. Phys. Chem. B 110, 6351-6358
34. Lin, S., and Struve, W. S. (1991) Photochem. Photobiol. 54, 361-365
35. Plath, K., Mothes, W., Wilkinson, B. M., Stirling, C. J., and Rapoport, T. A. (1998) Cell 94, 795-807
36. Ramachandran, R., Tweten, R. K., and Johnson, A. E. (2004) Nat. Struct. Mol. Biol. 11, 697-705
37. Bondar, A. N., del Val, C., Freites, J. A., Tobias, D. J., and White, S. H. (2010) Structure 18, 847-857
38. Ménétret, J. F., Schaletzky, J., Clemons, W. M., Jr., Osborne, A. R., Skånland, S. S., Denison, C., Gygi, S. P., Kirkpatrick, D. S., Park, E., Ludtke, S. J., Rapoport, T. A., and Akey, C. W. (2007) Mol. Cell 28, 1083-1092
39. Prinz, A., Behrens, C., Rapoport, T. A., Hartmann, E., and Kalies, K. U. (2000) EMBO J. 19, 1900-1906
40. Becker, T., Bhushan, S., Jarasch, A., Armache, J. P., Funes, S., Jossinet, F., Gumbart, J., Mielke, T., Berninghausen, O., Schulten, K., Westhof, E., Gilmore, R., Mandon, E. C., and Beckmann, R. (2009) Science 326, 1369-1373
41. Hanahan, D. (1983) J. Mol. Biol. 166, 557-580
42. Baneyx, F., and Georgiou, G. (1990) J. Bacteriol. 172, 491-494
43. Bonardi, F., London, G., Nouwen, N., Feringa, B. L., and Driessen, A. J. (2010) Angew. Chem. Int. Ed. Engl. 49, 7234-7238
44. Klose, M., Schimz, K. L., van der Wolk, J., Driessen, A. J., and Freudl, R. (1993) J. Biol. Chem. 268, 4504-4510
45. Kusters, I., van den Bogaart, G., Kedrov, A., Krasnikov, V., Fulyani, F., Poolman, B., and Driessen, A. J. (2011) Structure 19, 430-439