Identification of Yersinia ruckeri from diseased salmonid fish by Fourier transform infrared spectroscopy

Journal of Fish Diseases

Volumn 35, Issue 1, 2012, Pages 1-10

  Wortberg, F ^a   Nardy, E ^a   Contzen, M ^a   Rau, J ^a  

^a Chemisches Und Veterinäruntersuchungsamt Stuttgart CVUAS   (Germany)

Author keywords

Biotype; Enteric redmouth disease; Motility; Sorbitol; Yersinia enterocolitica; Yersinia ruckeri

Indexed keywords

RNA 16S;

ANIMAL; ANIMAL DISEASE; ARTICLE; BACTERIUM IDENTIFICATION; CLASSIFICATION; CLUSTER ANALYSIS; FISH DISEASE; GENETICS; INFRARED SPECTROSCOPY; ISOLATION AND PURIFICATION; METHODOLOGY; MICROBIOLOGY; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; REPRODUCIBILITY; SALMONID; SENSITIVITY AND SPECIFICITY; YERSINIA INFECTION; YERSINIA RUCKERI;

ANIMALS; BACTERIAL TYPING TECHNIQUES; CLUSTER ANALYSIS; FISH DISEASES; MOLECULAR SEQUENCE DATA; REPRODUCIBILITY OF RESULTS; RNA, RIBOSOMAL, 16S; SALMONIDAE; SENSITIVITY AND SPECIFICITY; SPECTROSCOPY, FOURIER TRANSFORM INFRARED; YERSINIA INFECTIONS; YERSINIA RUCKERI;

ENTEROBACTERIACEAE; HAFNIA ALVEI; NEGIBACTERIA; SALMONIDAE; YERSINIA; YERSINIA ENTEROCOLITICA; YERSINIA RUCKERI;

EID: 83655167029     PISSN: 01407775     EISSN: 13652761     Source Type: Journal    
DOI: 10.1111/j.1365-2761.2011.01317.x     Document Type: Article

References (33)

1. Austin D.A., Robertson P.A.W. & Austin B. (2003) Recovery of a new biogroup of Yersinia ruckeri from diseased rainbow trout (Oncorhynchus mykiss, Walbaum). Systematic and Applied Microbiology 26, 127-131.
2. Bercovieri H., Steigerwalt A.G., Guiyoule A., Huntley-Carter G. & Brenner D.J. (1984) Yersinia aldovae (formerly Yersinia enterocolitica-like group X2): a new species of Enterobacteriaceae isolated from aquatic ecosystems. International Journal of Systematic Bacteriology 34, 166-172.
3. Bockemuhl J. & Wong J.D. (2003) Yersinia. In: Manual of Clinical Microbiology, 8th edn (ed. by P.R. Murray, E.J. Baron, M.A. Pfaller, J.H. Jorgensen & R.H. Yolken), pp. 672-683. ASM Press, Washington, DC.
4. Buller N.B. (2004) Bacteria from Fish and Other Aquatic Animals: A Practical Identification Manual. CABI Publishing, Walling ford, UK.
5. Davies R.L. (1990) O-Serotyping of Yersinia ruckeri with special emphasis on European isolates. Veterinary Microbiology 22, 299-307.
6. Davies R.L. & Frerichs G.N. (1989) Morphological and biochemical differences among isolates of Yersinia ruckeri obtained from wide geographical areas. Journal of Fish Diseases 12, 357-365.
7. Davies A.R., Capell C., Jehanno D., Nychas G.J.E. & Kirby R.M. (2001) Incidence of foodborne pathogens in European fish. Food Control 12, 67-71.
8. Ewing W.H., Ross A.J., Brenner D.J. & Fanning G.R. (1978) Yersinia ruckeri sp. nov., the redmouth (RM) bacterium. International Journal of Systematic Bacteriology 28, 37-44.
9. Gelev I., Gelev E., Steigerwalt A.G., Carter G.P. & Brenner D.J. (1990) Identification of the bacterium associated with haemorrhagic septicaemia in rainbow trout as Hafnia alvei. Research in Microbiology 141, 573-576.
10. Gould C. (2009). Experience with ERM prophylaxis in the UK trout industry. Der Weg zum gesunden Fisch. XII. Gemeinschaftstagung der Deutschen, Österreichischen und Schweizer Sektionen der European Association of Fish Pathologists (EAFP), pp. 106-109.
11. Helm D., Labischinski H., Schallhehn G. & Naumann D. (1991) Classification and identification of bacteria by Fourier-transformed infrared spectroscopy. Journal of General Microbiology 177, 69-79.
12. Johnson J.L. (1994) Similarity analysis of rRNAs. In: Methods for General and Molecular Bacteriology (ed. by P. Gerhardt, R.G.E. Murray, W.A. Wood & N.R. Krieg), pp. 683-700. American Society for Microbiology, Washington, DC.
13. Kapperud G. (1981) Survey on the reservoirs of Yersinia enterocolitica and Yersinia enterocolitica-like bacteria in Scandinavia. Acta Pathologica et Microbiologica Scandinavia Section B 89, 29-35.
14. Kapperud G. & Jonsson B. (1976) Yersinia enterocolitica in brown trout (Salmo trutta, L.) from Norway. Acta pathologica et microbiologica Scandinavia Section B 84, 66-68.
15. Kuhm A., Sutter D., Felleisen R. & Rau J. (2009) Identification of Yersinia enterocolitica at the species and subspecies levels by Fourier transform infrared spectroscopy. Applied and Environmental Microbiology 75, 5809-5813.
16. Kümmerle M., Scherer S. & Seiler H. (1998) Rapid and reliable identification of food-borne yeasts by Fourier-transform infrared spectroscopy. Applied and Environmental Microbiology 64, 2207-2214.
17. Merhej V., Adékambi T., Pagnier I., Raoult D. & Drancourt M. (2008) Yersinia massiliensis sp. nov., isolated from fresh water. International Journal of Systematic and Evolutionary Microbiology 58, 779-784.
18. Naumann D. (2000) Infrared spectroscopy in microbiology. In: Encyclopedia of Analytical Chemistry (ed. by R.A. Meyers), pp. 102-131. John Wiley & Sons Ltd, Chichester, UK.
19. Naumann D., Helm D. & Labischinski H. (1990) Einsatzmöglichkeiten der FT-IR-Spektroskopie in Diagnostik und Epidemiologie - Ein neuartiges Verfahren zur Charakterisierung pathogener Bakterien (German). Bundesgesundheitsblatt 33, 387-393.
20. Neubauer H., Sprague L.D., Scholz H. & Hensel A. (2001) Yersinia enterocolitica infections: 1. Impact on animal health (German). Berliner und Münchner Tierärztliche Wochenschrift 114, 8-12.
21. Popovic N.T., Coz-Rakovac R. & Strunjak-Perovic I. (2007) Commercial phenotypic tests (API 20E) in diagnosis of fish bacteria: a review. Veterinari Medicina 52, 49-53.
22. Rau J., Perz R., Klittich G. & Contzen M. (2009) Cereulidbildende präsumtive Bacillus cereus aus Lebensmitteln - Differenzierende Untersuchungen mittels kultureller Methoden, LC-MS/MS, PCR und Infrarotspektroskopie unter Berücksichtigung thermotoleranter Vertreter (German). Berliner und Münchner Tierärztliche Wochenschrift 122, 25-36.
23. Rebuffo C.A., Schmitt J., Wenning M., von Stetten F. & Scherer S. (2006) Reliable and rapid identification of Listeria monocytogenes and Listeria species by artificial neural network-based Fourier transform infrared spectroscopy. Applied and Environmental Microbiology 72, 994-1000.
24. Rodriguez L.A., Gallardo C.S., Acosta F., Nieto T.P., Acosta B. & Real F. (1998) Hafnia alvei is an opportunistic pathogen causing mortality in brown trout, Salmo trutta L. Journal of Fish Diseases 21, 365-370.
25. Romalde J.L., Magarinos B., Barja J.L. & Toranzo A.E. (1993) Antigenic and molecular characterization of Yersinia ruckeri proposal for a new intraspecies classification. Systematic and Applied Microbiology 16, 411-419.
26. Santos Y., Romalde J.L., Bandin I., Magarinos B., Nunez S., Barja J.L. & Toranzo A.E. (1993) Usefulness of the API-20E system for the identification of bacterial fish pathogens. Aquaculture 116, 111-120.
27. Sulakvelidze A., Kreger A., Joseph A., Robins-Browne R.M., Fasano A., Wauters G., Harnett N., DeTolla L. & Morris J.G. (2000) Yersiniae other than Y. enterocolitica, Y. pseudotuberculosis, and Y. pestis: the ignored species. Microbes and Infection 2, 497-513.
28. Tinsley J.W., Austin D.A., Lyndon A.R. & Austin B. (2011) Novel non-motile phenotypes of Yersinia ruckeri suggest expansion of the current clonal complex theory. Journal of Fish Diseases 34, 311-317.
29. Tobback E., Decostere A., Hermans K., Haesebrouck F. & Chiers K. (2007) Yersinia ruckeri infections in salmonid fish. Journal of Fish Diseases 30, 257-268.
30. Udelhoven T., Naumann D. & Schmitt J. (2000) Development of a hierarchical classification system with artificial neural networks and FT-IR spectra for the identification of bacteria. Applied Spectroscopy 54, 1471-1479.
31. Udelhoven T., Novozhilov M. & Schmitt J. (2003) The NeuroDeveloper: a tool for modular neural classification of spectroscopic data. Chemometrics and Intelligent Laboratory Systems 66, 219-226.
32. Ward J.H. (1963) Hierarchical grouping to optimize an objective function. Journal of the American Statistical Association 58, 236-244.
33. Woodland J. (2009) Bacteriology. In: National Wild Fish Health Survey - Laboratory Procedures Manual, 5.0 Edn (ed. by N. Heil). chapter 14, pp. 41-42. U.S. Fish and Wildlife Service, Warm Springs, GA.