Quantitative analysis of DNA degradation in the dead Body

Acta Medica Okayama

Volumn 65, Issue 5, 2011, Pages 299-306

  Itani, Miki ^a   Yamamoto, Yuji ^a   Doi, Yusuke ^a   Miyaishi, Satoru ^a  

^a OKAYAMA UNIVERSITY   (Japan)

Author keywords

DNA degradation; Personal identification; Postmortem interval

Indexed keywords

DNA;

ANIMAL; ARTICLE; BRAIN; CADAVER; HUMAN; KIDNEY; LIVER; METABOLISM; MUSCLE; RAT; SPRAGUE DAWLEY RAT; TEMPERATURE; TIME;

ANIMALS; BRAIN; CADAVER; DNA; HUMANS; KIDNEY; LIVER; MUSCLES; POSTMORTEM CHANGES; RATS; RATS, SPRAGUE-DAWLEY; TEMPERATURE; TIME FACTORS;

EID: 83455255297     PISSN: 0386300X     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (23)

1. Meissner C, Bruse P, Mueller E and Oehmichen M: A new sensi tive short pentaplex (ShoP) PCR for typing of degraded DNA. Forensic Sci Int (2007) 166: 121-127.
2. Hiratsuka M, Tsukamoto N, Konno Y, Nata M, Hashiyada M, Funayama M and Mizugaki M: Forensic assessment of 16 single nucleotide polymorphisms analyzed by hybridization probe assay. Tohoku J Exp Med (2005) 207: 255-261.
3. Tzen CY, Wu TY and Liu HF: Sequence polymorphism in the cod ing region of mitochondrial genome encompassing position, 8389-8865. Forensic Sci Int (2001) 120: 204-209.
4. Linch CA, Whiting DA and Holland MM: Human hair histogenesis for the mitochondrial DNA forensic scientist. J Forensic Sci (2001) 46: 844-853.
5. Mulero JJ, Chang CW, Lagac RE, Wang DY, Bas JL, McMahon TP and Hennessy LK: Development and validation of the AmpFlSTR MiniFiler PCR Amplification Kit: a MiniSTR multiplex for the analy-sis of degraded and/or PCR inhibited DNA. J Forensic Sci (2008) 53: 838-852.
6. Okamoto O, Yamamoto Y, Inagaki S, Yoshitome K, Ishikawa T, Imabayashi K, Miyaishi S and Ishizu H: Analysis of short tandem repeat (STR) polymorphisms by the powerplex 16 system and cap illary electrophoresis: application to forensic practice. Acta Med Okayama (2003) 57: 59-71.
7. Hashiyada M, Itakura Y, Nagashima T, Nata M and Funayama M: Polymorphism of 17 STRs by multiplex analysis in Japanese popu lation. Forensic Sci Int (2003) 133: 250-253.
8. Davoren J, Vanek D, Konjhodzi R, Crews J, Huffine E and Parsons TJ: Highly effective DNA extraction method for nuclear short tandem repeat testing of skeletal remains from mass graves. Croat Med J (2007) 48: 478-485.
9. Kaiser C, Bachmeier B, Conrad C, Nerlich A, Bratzke H, Eisenmenger W and Peschel O: Molecular study of time depen dent changes in DNA stability in soil buried skeletal residues. Forensic Sci Int (2008) 177: 32-36.
10. Foran DR: Relative degradation of nuclear and mitochondrial DNA: an experimental approach. J Forensic Sci (2006) 51: 766-770.
11. Budowle B and van Daal A: Forensically relevant SNP classes. Biotechniques (2008) 44: 603-608.
12. Reza A, Simon JW and Ali A: Forensic implications of genetic analyses from degraded DNA - A review. Forensic Sci Int: Genetics (2010) 4: 148-157.
13. Eilert KD and Foran DR: Polymerase Resistance to Polymerase Chain Reaction Inhibitors in Bone. J Forensic Sci (2009) 54: 1001-1007.
14. Lindahl T: Instability and decay of the primary structure of DNA. Nature (1993) 362: 709-715.
15. Bär W, Kratzer A, Mächler M and Schmid W: Postmortem stabil ity of DNA, Forensic Sci Int (1988) 39: 59-70
16. Johnson LA and Ferris JA: Analysis of postmortem DNA degrada tion by single-cell gel electrophoresis. Forensic Sci Int (2002) 126: 43-47.
17. Niemcunowicz-Janica A, Pepinski W, Janica JR, Skawronska M, Janica J and Koc-Zorawska E: Detectability of SGM Plus profiles in heart and lungs tissue samples incubated in different environ ments. Leg Med (Tokyo) (2008) 10: 35-38.
18. Swango KL, Timken MD, Chong MD and Buoncristiani MR: A quantitative PCR assay for the assessment of DNA degradation in forensic samples. Forensic Sci Int (2006) 158: 14-26.
19. Pellissier F, Glogowski CM, Heinemann SF, Ballivet M and Ossipow V: Lab assembly of a low-cost, robust SYBR green buffer system for quantitative real-time polymerase chain reaction. Anal Biochem (2006) 350: 310-312.
20. Giglio S, Monis PT and Saint CP: Demonstration of preferential binding of SYBR Green I to specific DNA fragments in real-time multiplex PCR. Nucleic Acids Res (2003) 31: e136.
21. Müller S, Stanyon R, Finelli P, Archidiacono N and Wienberg J: Molecular cytogenetic dissection of human chromosomes 3 and 21 evolution. Proc Natl Acad Sci USA (2000) 97: 206-211.
22. Milos A, Selmanovi A, Smajlovi L, Huel RL, Katzmarzyk C, Rizvi A and Parsons TJ: Success rates of nuclear short tandem repeat typing from different skeletal elements. Croat Med J (2007) 48: 486-493.
23. Doi Y, Yamamoto Y, Inagaki S, Shigeta Y, Miyaishi S and Ishizu H: A new method for ABO genotyping using a multiplex single-base primer extension reaction and its application to forensic casework samples. Leg Med (Tokyo) (2004) 6: 213-223.