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Volumn 2011, Issue 7, 2011, Pages 39-46

LCGbase: Acomprehensive database for lineage-based co-regulated genes

Author keywords

Co regulated genes; Database; Evolution; Vertebrate

Indexed keywords

HISTONE;

EID: 83455221626     PISSN: None     EISSN: 11769343     Source Type: Journal    
DOI: 10.4137/EBO.S8540     Document Type: Article
Times cited : (7)

References (33)
  • 1
    • 79551632781 scopus 로고    scopus 로고
    • The ecoresponsive genome of Daphnia pulex
    • Feburary 4
    • Colbourne JK, Pfrender ME, Gilbert D, et al. The ecoresponsive genome of Daphnia pulex. Science. Feburary 4, 2011;331(6017):555-61.
    • (2011) Science , vol.331 , Issue.6017 , pp. 555-561
    • Colbourne, J.K.1    Pfrender, M.E.2    Gilbert, D.3
  • 3
    • 0035214768 scopus 로고    scopus 로고
    • Most of the human genome is transcribed
    • Dec
    • Wong GK, Passey DA, Yu J. Most of the human genome is transcribed. Genome Res. Dec 2001;11(12):1975-7.
    • (2001) Genome Res , vol.11 , Issue.12 , pp. 1975-1977
    • Wong, G.K.1    Passey, D.A.2    Yu, J.3
  • 4
    • 1842427830 scopus 로고    scopus 로고
    • The evolutionary dynamics of eukaryotic geneorder
    • Apr
    • Hurst LD, Pal C, Lercher MJ. The evolutionary dynamics of eukaryotic geneorder. Nat Rev Genet. Apr 2004;5(4):299-310.
    • (2004) Nat Rev Genet , vol.5 , Issue.4 , pp. 299-310
    • Hurst, L.D.1    Pal, C.2    Lercher, M.J.3
  • 5
    • 30744475434 scopus 로고    scopus 로고
    • The origins of eukaryotic gene structure
    • Feb
    • Lynch M. The origins of eukaryotic gene structure. Mol Biol Evol. Feb 2006;23(2):450-68.
    • (2006) Mol Biol Evol , vol.23 , Issue.2 , pp. 450-468
    • Lynch, M.1
  • 6
    • 70349623317 scopus 로고    scopus 로고
    • Identifying regulatory elements in eukaryotic genomes
    • Jul
    • Narlikar L, Ovcharenko I. Identifying regulatory elements in eukaryotic genomes. Brief Funct Genomic Proteomic. Jul 2009;8(4):215-30.
    • (2009) Brief Funct Genomic Proteomic , vol.8 , Issue.4 , pp. 215-230
    • Narlikar, L.1    Ovcharenko, I.2
  • 7
    • 77958526499 scopus 로고    scopus 로고
    • Epigenetic regulation of the neural transcriptome: The meaning of the marks
    • Nov
    • Meaney MJ, Ferguson Smith AC. Epigenetic regulation of the neural transcriptome: the meaning of the marks. Nat Neurosci. Nov 2010;13(11):1313-8.
    • (2010) Nat Neurosci , vol.13 , Issue.11 , pp. 1313-1318
    • Meaney, M.J.1    Ferguson, S.A.C.2
  • 8
    • 78049414227 scopus 로고    scopus 로고
    • Epigenetic reprogramming in plant and animal development
    • October 29
    • Feng S, Jacobsen SE, Reik W. Epigenetic reprogramming in plant and animal development. Science. October 29, 2010;330(6004):622-7.
    • (2010) Science , vol.330 , Issue.6004 , pp. 622-627
    • Feng, S.1    Jacobsen, S.E.2    Reik, W.3
  • 9
    • 33749325080 scopus 로고    scopus 로고
    • Genomic evolution of Hox gene clusters
    • September 29
    • Lemons D, McGinnis W. Genomic evolution of Hox gene clusters. Science. September 29, 2006;313(5795):1918-22.
    • (2006) Science , vol.313 , Issue.5795 , pp. 1918-1922
    • Lemons, D.1    McGinnis, W.2
  • 10
    • 33746657720 scopus 로고    scopus 로고
    • Systematic analysis of head to head gene organization: Evolutionary conservation and potential biological relevance
    • July 7
    • Li YY, Yu H, Guo ZM, Guo TQ, Tu K, Li YX. Systematic analysis of head-to-head gene organization: evolutionary conservation and potential biological relevance. PLoS Comput Biol. July 7, 2006;2(7):e74.
    • (2006) PLoS Comput Biol , vol.2 , Issue.7
    • Li, Y.Y.1    Yu, H.2    Guo, Z.M.3    Guo, T.Q.4    Tu, K.5    Li, Y.X.6
  • 11
    • 77956294665 scopus 로고    scopus 로고
    • Analysis of gene order conservation in eukaryotes identifies transcriptionally and functionally linked genes
    • Davila Lopez M, Martinez Guerra JJ, Samuelsson T. Analysis of gene order conservation in eukaryotes identifies transcriptionally and functionally linked genes. PLoS One. 2010;5(5):e10654.
    • (2010) PLoS One , vol.5 , Issue.5
    • Davila, L.M.1    Martinez, G.J.J.2    Samuelsson, T.3
  • 13
    • 65249090200 scopus 로고    scopus 로고
    • A comparative analysis of divergently-paired genes (DPGs) among Drosophila and vertebrate genomes
    • Yang L, Yu J. A comparative analysis of divergently-paired genes (DPGs) among Drosophila and vertebrate genomes. BMC Evol Biol. 2009;9:55.
    • (2009) BMC Evol Biol , vol.9 , pp. 55
    • Yang, L.1    Yu, J.2
  • 14
    • 33745146903 scopus 로고    scopus 로고
    • A common regulatory region functions bidirectionally in transcriptional activation of the human CYP1A1 and CYP1A2 genes
    • Jun
    • Ueda R, Iketaki H, Nagata K, et al. A common regulatory region functions bidirectionally in transcriptional activation of the human CYP1A1 and CYP1A2 genes. Mol Pharmacol. Jun 2006;69(6):1924-30.
    • (2006) Mol Pharmacol , vol.69 , Issue.6 , pp. 1924-1930
    • Ueda, R.1    Iketaki, H.2    Nagata, K.3
  • 15
    • 0037248815 scopus 로고    scopus 로고
    • OGRe: A relational database for comparative analysis of mitochondrial genomes
    • January 1
    • Jameson D, Gibson AP, Hudelot C, Higgs PG. OGRe: a relational database for comparative analysis of mitochondrial genomes. Nucleic Acids Res. January 1, 2003;31(1):202-6.
    • (2003) Nucleic Acids Res , vol.31 , Issue.1 , pp. 202-206
    • Jameson, D.1    Gibson, A.P.2    Hudelot, C.3    Higgs, P.G.4
  • 16
    • 33644881802 scopus 로고    scopus 로고
    • A gene order database of plastid genomes
    • Kurihara K, Kunisawa T. A gene order database of plastid genomes. Data Science Journal. 2004;3(0):60-79.
    • (2004) Data Science Journal , vol.3 , Issue.0 , pp. 60-79
    • Kurihara, K.1    Kunisawa, T.2
  • 17
    • 25844471721 scopus 로고    scopus 로고
    • The Yeast Gene Order Browser: Combining curated homology and syntenic context reveals gene fate in polyploid species
    • Oct
    • Byrne KP, Wolfe KH. The Yeast Gene Order Browser: combining curated homology and syntenic context reveals gene fate in polyploid species. Genome Res. Oct 2005;15(10):1456-61.
    • (2005) Genome Res , vol.15 , Issue.10 , pp. 1456-1461
    • Byrne, K.P.1    Wolfe, K.H.2
  • 18
    • 33644875753 scopus 로고    scopus 로고
    • Visualizing syntenic relationships among the hemiascomycetes with the Yeast Gene Order Browser
    • Database issue
    • Byrne KP, Wolfe KH. Visualizing syntenic relationships among the hemiascomycetes with the Yeast Gene Order Browser. Nucleic Acids Res.January 1, 2006;34(Database issue):D452-5.
    • (2006) Nucleic Acids Res.January , vol.34
    • Byrne, K.P.1    Wolfe, K.H.2
  • 19
    • 79954523717 scopus 로고    scopus 로고
    • EGOB: Eukaryotic Gene Order Browser
    • April 15
    • Lopez MD, Samuelsson T. eGOB: eukaryotic Gene Order Browser. Bioinformatics. April 15, 2011;27(8):1150-1.
    • (2011) Bioinformatics , vol.27 , Issue.8 , pp. 1150-1151
    • Lopez, M.D.1    Samuelsson, T.2
  • 20
    • 37249012276 scopus 로고    scopus 로고
    • Nucleosome destabilization in the epigenetic regulation of gene expression
    • Jan
    • Henikoff S. Nucleosome destabilization in the epigenetic regulation of gene expression. Nat Rev Genet. Jan 2008;9(1):15-26.
    • (2008) Nat Rev Genet , vol.9 , Issue.1 , pp. 15-26
    • Henikoff, S.1
  • 21
    • 60349089645 scopus 로고    scopus 로고
    • Nucleosome positioning and gene regulation: Advances through genomics
    • Mar
    • Jiang C, Pugh BF. Nucleosome positioning and gene regulation: advances through genomics. Nat Rev Genet. Mar 2009;10(3):161-72.
    • (2009) Nat Rev Genet , vol.10 , Issue.3 , pp. 161-172
    • Jiang, C.1    Pugh, B.F.2
  • 25
    • 33644873945 scopus 로고    scopus 로고
    • EPD in its twentieth year: Towards complete promoter coverage of selected model organisms
    • Database issue January
    • Schmid CD, Perier R, Praz V, Bucher P. EPD in its twentieth year: towards complete promoter coverage of selected model organisms. Nucleic Acids Res. January 1, 2006;34(Database issue):D82-5.
    • (2006) Nucleic Acids Res1 , vol.34
    • Schmid, C.D.1    Perier, R.2    Praz, V.3    Bucher, P.4
  • 26
    • 78651280402 scopus 로고    scopus 로고
    • COXPRESdb: A database to compare gene coexpression in seven model animals
    • Database issue Jan
    • Obayashi T, Kinoshita K. COXPRESdb: a database to compare gene coexpression in seven model animals. Nucleic Acids Res. Jan 2010;39 (Database issue):D1016-22.
    • (2010) Nucleic Acids Res , vol.39
    • Obayashi, T.1    Kinoshita, K.2
  • 27
    • 77951972600 scopus 로고    scopus 로고
    • BioNet: An R-Package for the functional analysis of biological networks
    • April 15
    • Beisser D, Klau GW, Dandekar T, Muller T, Dittrich MT. BioNet: an R-Package for the functional analysis of biological networks. Bioinformatics. April 15, 2010;26(8):1129-30.
    • (2010) Bioinformatics , vol.26 , Issue.8 , pp. 1129-1130
    • Beisser, D.1    Klau, G.W.2    Dandekar, T.3    Muller, T.4    Dittrich, M.T.5
  • 28
    • 77951682635 scopus 로고    scopus 로고
    • KaKs_Calculator 2.0: A toolkit incorporating gamma-series methods and sliding window strategies
    • Mar
    • Wang D, Zhang Y, Zhang Z, Zhu J, Yu J. KaKs_Calculator 2.0: a toolkit incorporating gamma-series methods and sliding window strategies. Genomics Proteomics Bioinformatics. Mar 2010;8(1):77-80.
    • (2010) Genomics Proteomics Bioinformatics , vol.8 , Issue.1 , pp. 77-80
    • Wang, D.1    Zhang, Y.2    Zhang, Z.3    Zhu, J.4    Yu, J.5
  • 30
    • 83455211382 scopus 로고    scopus 로고
    • Shotgun sequencing (SGS). Encyclopedia of molecular cell biology and molecular medicine
    • Yu J, Wong GKS, Wang J, Yang H. Shotgun sequencing (SGS). Encyclopedia of molecular cell biology and molecular medicine. 2005.
    • (2005)
    • Yu, J.1    Wong, G.K.S.2    Wang, J.3    Yang, H.4
  • 31
    • 34250305146 scopus 로고    scopus 로고
    • Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
    • June 14
    • Birney E, Stamatoyannopoulos JA, Dutta A, et al. Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. Nature. June 14, 2007;447(7146):799-816.
    • (2007) Nature , vol.447 , Issue.7146 , pp. 799-816
    • Birney, E.1    Stamatoyannopoulos, J.A.2    Dutta, A.3
  • 32
    • 67649292737 scopus 로고    scopus 로고
    • Unlocking the secrets of the genome
    • June 18
    • Celniker SE, Dillon LA, Gerstein MB, et al. Unlocking the secrets of the genome. Nature. June 18, 2009;459(7249):927-30.
    • (2009) Nature , vol.459 , Issue.7249 , pp. 927-930
    • Celniker, S.E.1    Dillon, L.A.2    Gerstein, M.B.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.