Soil quality indicators for intensive vegetable production systems in Java, Indonesia

Ecological Indicators

Volumn 18, Issue , 2012, Pages 218-226

  Moeskops, Bram ^a   Buchan, David ^a   Sukristiyonubowo, ^b   De Neve, Stefaan ^a   De Gusseme, Bart ^a   Widowati, Ladiyani Retno ^b   Setyorini, Diah ^b   Sleutel, Steven ^a  

^a GHENT UNIVERSITY   (Belgium)

^b Indonesian Soil Research Institute   (Indonesia)

Author keywords

Enzyme activity; Ergosterol; Indonesia; Organic farming; PLFA; Soil quality

Indexed keywords

ERGOSTEROL; INDONESIA; ORGANIC FARMING; PLFA; SOIL QUALITY;

ALCOHOLS; DISCRIMINANT ANALYSIS; ENZYME ACTIVITY; FORESTRY; FUNGI; PHOSPHOLIPIDS; VEGETABLES; FATTY ACIDS;

SOILS;

AGRICULTURAL SOIL; ARBUSCULAR MYCORRHIZA; BACTERIUM; BIOMARKER; CANONICAL ANALYSIS; CROP PRODUCTION; DISCRIMINANT ANALYSIS; ENZYME ACTIVITY; ERGOSTEROL; FATTY ACID; FUNGUS; INDEX METHOD; INTENSIVE AGRICULTURE; MICROBIAL COMMUNITY; ORGANIC FARMING; PHOSPHOLIPID; SECONDARY FOREST; SOIL QUALITY; TROPICAL ENVIRONMENT; VEGETABLE; AGRICULTURAL PRODUCTION; ALCOHOL; BIOINDICATOR; DATA SET; GENETIC MARKER; LIPID;

AGRICULTURE; ALCOHOLS; FATTY ACIDS; FORESTS; FUNGI; GLUCOSIDASE; INDICATORS; INDONESIA; JAVA; LIPIDS; SOIL; VEGETABLES; ENZYMATIC ACTIVITY; FORESTRY; QUALITY;

GREATER SUNDA ISLANDS; JAVA; SUNDA ISLES; INDONESIA; WEST JAVA;

ARBUSCULAR; BACTERIA (MICROORGANISMS); FUNGI;

EID: 83455181648     PISSN: 1470160X     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ecolind.2011.11.011     Document Type: Article

References (47)

1. K. Alef, and P. Nannipieri Methods in Applied Soil Microbiology and Biochemistry 1995 Academic Press London
2. E. Bth The use of neutral lipid fatty acids to indicate the physiological conditions of soil fungi Microb. Ecol. 45 2003 373 383
3. G.D. Bending, M.K. Turner, F. Rayns, M.C. Marx, and M. Wood Microbial and biochemical soil quality indicators and their potential for differentiating areas under contrasting agricultural management regimes Soil Biol. Biochem. 36 2004 1785 1792
4. E.G. Bligh, and W.J. Dyer A rapid method of total lipid extraction and purification Can. J. Biochem. Physiol. 37 1959 911 917
5. D.A. Bossio, and K.M. Scow Impacts of carbon and flooding on soil microbial communities: phospholipid fatty acid profiles and substrate utilization patterns Microb. Ecol. 35 1998 265 278
6. R.A. Burke, M. Molina, J.E. Cox, L.J. Osher, and M.C. Piccolo Stable carbon isotope ratio and composition of microbial fatty acids in tropical soils J. Environ. Qual. 32 2003 198 206
7. L.E. Casida, D.A. Klein Jr.; and T. Santoro Soil dehydrogenase activity Soil Sci. 98 1964 371 376
8. X. Castillo, and R.G. Joergensen Impact of ecological and conventional arable management systems on chemical and biological soil quality indices in Nicaragua Soil Biol. Biochem. 33 2001 1591 1597
9. R.P. Dick Soil enzyme activities as indicators of soil quality J.W. Doran, D.C. Coleman, D.F. Bezdicek, B.A. Stewart, Defining Soil Quality for a Sustainable Environment 1994 Soil Science Society of America Madison 107 124
10. G.W. Gee, and J.W. Bauder Particle-size analysis A. Klute, Methods of Soil Analysis, Part 1: Physical and Mineralogical Methods second ed. Agronomy 9 1986 ASA, SSSA Madison 383 411
11. K.E. Giller, M.H. Beare, P. Lavelle, A.-M.N. Izac, and M.J. Swift Agricultural intensification, soil biodiversity and agroecosystem function Appl. Soil Ecol. 6 1997 3 16
12. P. Gong, X. Guan, and E. Witter A rapid method to extract ergosterol from soil by physical disruption Appl. Soil Ecol. 17 2001 285 289
13. M. Gryndler, J. Larsen, H. Hršelová, V. Řezáčová, H. Gryndlerová, and J. Kubát Organic and mineral fertilization, respectively, increase and decrease the development of external mycelium of arbuscular mycorrhizal fungi in a long-term field experiment Mycorrhiza 16 2006 159 166
14. M. Helfrich, B. Ludwig, M. Potthoff, and H. Flessa Effect of litter quality and soil fungi on macroaggregate dynamics and associated partitioning of litter carbon and nitrogen Soil Biol. Biochem. 40 2008 1823 1835
15. M.N. Högberg Discrepancies between ergosterol and the phospholipid fatty acid 18:2ω6,9 as biomarkers for fungi in boreal forest soils Soil Biol. Biochem. 38 2006 3431 3435
16. C.J. Huberty Applied Discriminant Analysis 1994 John Wiley & Sons New York
17. K. Jangid, M.A. Williams, A.J. Franzluebbers, J.S. Sanderlin, J.H. Reeves, M.B. Jenkins, D.M. Endale, D.C. Coleman, and W.B. Whitman Relative impacts of land-use, management intensity and fertilization upon soil microbial community structure in agricultural systems Soil Biol. Biochem. 40 2008 2843 2853
18. C. Janvier, F. Villeneuve, C. Alabouvette, V. Edel-Hermann, T. Mateille, and C. Steinberg Soil health through soil disease suppression: which strategy from descriptors to indicators? Soil Biol. Biochem. 39 2007 1 23
19. R.G. Joergensen, and X. Castillo Interrelationships between microbial and soil properties in young volcanic ash soils of Nicaragua Soil Biol. Biochem. 33 2001 1581 1589
20. R.G. Joergensen, and F. Wichern Quantitative assessment of the fungal contribution to microbial tissue in soil Soil Biol. Biochem. 40 2008 2977 2991
21. K. Killham Soil Ecology 1994 Cambridge University Press Cambridge
22. M. Klamer, and E. Bth Estimation of conversion factors for fungal biomass determination in compost using ergosterol and PLFA 18:2ω6,9 Soil Biol. Biochem. 36 2004 57 65
23. M. Kottek, J. Grieser, C. Beck, B. Rudolf, and F. Rubel World map of the Köppen-Geiger climate classification updated Meteorol. Z. 15 2006 259 263
24. J. Kozdrój, and J.D. van Elsas Structural diversity of microorganisms in chemically perturbed soil assessed by molecular and cytochemical approaches J. Microbiol. Methods 43 2001 197 212
25. J.E. Kurle, and F.L. Pfleger The effects of cultural practices and pesticides on VAM fungi F.L. Pfleger, R.G. Linderman, Mycorrhizae and Plant Health 1994 APS Press St. Paul 101 131
26. P. Mäder, A. Fließbach, D. Dubois, L. Gunst, P. Fried, and U. Niggli Soil fertility and biodiversity in organic farming Science 296 2002 1694 1697
27. N. Mazlan, and J. Mumford Insecticide use in cabbage pest management in the Cameron Highlands, Malaysia Crop Prot. 24 2005 31 39
28. C. Mille-Lindblom, E. von Wachenfeldt, and L.J. Tranvik Ergosterol as a measure of living fungal biomass: persistence in environmental samples after fungal death J. Microbiol. Methods 59 2004 253 262
29. B. Moeskops, Sukristiyonubowo, D. Buchan, S. Sleutel, L. Herawaty, E. Husen, R. Saraswati, D. Setyorini, and S. De Neve Soil microbial communities and activities under intensive organic and conventional vegetable farming in West Java, Indonesia Appl. Soil Ecol. 45 2010 112 120
30. J. Moore-Kucera, and R.P. Dick PLFA profiling of microbial community structure and seasonal shifts in soils of a Douglas-fir chronosequence Microb. Ecol. 55 2008 500 511
31. P.A. Olsson Signature fatty acids provide tools for determination of the distribution and interactions of mycorrhizal fungi in soil FEMS Microbiol. Ecol. 29 1999 303 310
32. S.O. Petersen, and M.J. Klug Effects of sieving, storage, and incubation temperature on the phospholipid fatty acid profile of a soil microbial community Appl. Environ. Microbiol. 60 1994 2421 2430
33. P. Phupaibul, U. Kaewsuwan, C. Chitbuntanorm, N. Chinoim, and T. Matoh Evaluation of environmental impact of the raised-bed-dike (Rong Chin) system along the Tha Chin River in Suphan Buri-Nakhon Pathom Provinces, Thailand Soil Sci. Plant Nutr. 48 2002 641 649
34. D.D. Poudel, D.J. Midmore, and W.L. Hargrove An analysis of commercial vegetable farms in relation to sustainability in the uplands of Southeast Asia Agric. Syst. 58 1998 107 128
35. E. Puglisi, A.A.M. Del Re, M.A. Rao, and L. Gianfreda Development and validation of numerical indexes integrating enzyme activities of soils Soil Biol. Biochem. 38 2006 1673 1681
36. E. Puglisi, M. Nicelli, E. Capri, M. Trevisan, and A.A.M. Del Re A soil alteration index based on phospholipid fatty acids Chemosphere 61 2005 1548 1557
37. P.W. Ramsey, M.C. Rillig, K.P. Feris, W.E. Holben, and J.E. Gannon Choice of methods for soil microbial community analysis: PLFA maximizes power compared to CLPP and PCR-based approaches Pedobiologia 50 2006 275 280
38. B. Rerkasem Transforming subsistence cropping in Asia Plant Prod. Sci. 8 2005 275 287
39. S. Schroer, D. Sulistyanto, and R.-U. Ehlers Control of Plutella xylostella using polymer-formulated Steinernema carpocapsae and Bacillus thuringiensis in cabbage fields J. Appl. Entomol. 129 2005 198 204
40. C.E. Shannon, and W. Weaver The Mathematical Theory of Communication 1949 University of Illinois Press Urbana
41. S. Sleutel, J. Vandenbruwane, A. De Schrijver, K. Wuyts, B. Moeskops, K. Verheyen, and S. De Neve Patterns of dissolved organic carbon and nitrogen fluxes in deciduous and coniferous forests under historic high nitrogen deposition Biogesciences 6 2009 2743 2758
42. O.C. Turgay, and M. Nonaka Effects of land-use and management practices on soil ergosterol content in andosols Soil Sci. Plant Nutr. 48 2002 693 699
43. R. Upchurch, C.Y. Chi, K. Everett, G. Dyszynski, D.C. Coleman, and W.B. Whitman Differences in the composition and diversity of bacterial communities from agricultural and forest soils Soil Biol. Biochem. 40 2008 1294 1305
44. A.W. West, W.D. Grant, and G.P. Sparling Use of ergosterol, diaminopimelic acid and glucosamine contents of soils to monitor changes in microbial populations Soil Biol. Biochem. 19 1987 607 612
45. L. Zelles Phospholipid fatty acid profiles in selected members of soil microbial communities Chemosphere 35 1997 275 294
46. L. Zelles Fatty acid patterns of phospholipids and lipopolysaccharides in the characterisation of microbial communities in soil: a review Biol. Fertil. Soils 29 1999 111 129
47. X.R. Zhao, Q. Lin, and P.C. Brookes Does soil ergosterol concentration provide a reliable estimate of soil fungal biomass? Soil Biol. Biochem. 37 2005 311 317