Draft genome sequence of the biocontrol bacterium Chromobacterium sp. strain C-61

Journal of Bacteriology

Volumn 193, Issue 23, 2011, Pages 6803-6804

  Kim, Hyun Jung ^a   Park, Ju Yeon ^a   Han, Song Hee ^a   Lee, Jin Hee ^a   Rong, Xiaoqing ^b   Gardener, Brian B Mcspadden ^a,b   Park, Seur Kee ^c   Kim, Young Cheol ^a  

^a Chonnam National University   (South Korea)

^b OHIO STATE UNIVERSITY   (United States)

^c Sunchon National University   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; GENOMIC DNA; NUCLEOTIDE; TRANSFER RNA;

AUTOMATION; BACTERIAL GENOME; BACTERIAL STRAIN; BIOLOGICAL ACTIVITY; CHROMOBACTERIUM VIOLACEUM; GENE FUNCTION; GENE SEQUENCE; GENOME ANALYSIS; NONHUMAN; NOTE; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN TRANSPORT; ANTIBIOSIS; ARTICLE; BIOLOGICAL PEST CONTROL; CHROMOBACTERIUM; GENETICS; HYPHOMYCETES; INSTRUMENTATION; ISOLATION AND PURIFICATION; MICROBIOLOGY; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PEPPER; PHYSIOLOGY; PLANT DISEASE;

BACTERIA (MICROORGANISMS); CHROMOBACTERIUM SP; CHROMOBACTERIUM VIOLACEUM ATCC 12472;

ANTIBIOSIS; BASE SEQUENCE; CAPSICUM; CHROMOBACTERIUM; GENOME, BACTERIAL; MOLECULAR SEQUENCE DATA; PEST CONTROL, BIOLOGICAL; PLANT DISEASES; RHIZOCTONIA;

EID: 83255179818     PISSN: 00219193     EISSN: 10985530     Source Type: Journal    
DOI: 10.1128/JB.06191-11     Document Type: Note

References (9)

1. Aziz, R. K., et al. 2008. The RAST server: rapid annotations using subsystems technology. BMC Genomics 9:75.
2. Kim, Y. C., H. Jung, K. Y. Kim, and S. K. Park. 2008. An effective biocontrol bioformulation against Phytophthora blight of pepper using growth mixtures of combined chitinolytic bacteria under different field conditions. Eur. J. Plant Pathol. 120:373-382.
3. Kim, Y. C., J. H. Lee, Y.-S. Bae, B.-K. Sohn, and S. K. Park. 2010. Development of effective environmentally-friendly approaches to control Alternaria blight and anthracnose diseases of Korean ginseng. Eur. J. Plant Pathol. 127:443-450.
4. Overbeek, R., et al. 2005. The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes. Nucleic Acids Res. 33:5691-5702.
5. Park, S. K., M.-C. Lee, and G. E. Harman. 2005. The biocontrol activity of Chromobacterium sp. strain C-61 against Rhizoctonia solani depends on the productive ability of chitinase. Plant Pathol. J. 21:275-282.
6. Park, S. K., C. W. Kim, H. Kim, J. S. Jung, and G. E. Harman. 2007. Cloning and high-level production of a chitinase from Chromobacterium sp. and the role of conserved or nonconserved residues on its catalytic activity. Appl. Microbiol. Biotechnol. 74:791-804.
7. Park, S. K., H. Y. Lee, and K. C. Kim. 1995. Antagonistic effect of chitinolytic bacteria on soilborne plant pathogens. Korean J. Plant Pathol. 11:47-52.
8. Zerbino, D. R., and E. Birney. 2008. Velvet: algorithms for de novo shore read assembly using de Bruijn graphs. Genome Res. 18:821-829.
9. Zerbino, D. R., G. K. McEwen, E. H. Margulies, and E. Birney. 2009. Pebble and rock band: heuristic resolution of repeats and scaffolding in the velvet short-read de novo assembler. PLoS One 4:e8407.