Assessment of transferability of sorghum (Sorghum bicolor) EST-SSR markers among its wild species and other members of Gramineae family

Indian Journal of Agricultural Sciences

Volumn 81, Issue 11, 2011, Pages 1163-1167

  Nagaraja Reddy, R ^a,b   Madhusudhana, R ^a,c   Prasanthi, M ^a,c   Srinivas, G ^a,c   Murali Mohan, S ^a,c   Satish, K ^a,c   Seetharama, N ^a,c  

^a ICAR INDIAN INSTITUTE OF MILLETS RESEARCH   (India)

^b ICAR DIRECTORATE OF MEDICINAL AND AROMATIC PLANTS RESEARCH   (India)

^c Marker Assisted Selection Lab   (India)

Author keywords

EST SSR; Intra and Inter specific transferability; Sorghum

Indexed keywords

EID: 83155182108     PISSN: 00195022     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (18)

1. Altschul S F, Gish W, Miller W, Myers E W and Lipman D J. 1990. Basic local alignment search tool. Journal of Molecular Biology 215, 403-10.
2. Cho Y G, Ishii T, Temnykh S, Chen X, Lipovich L, McCouch S R, Park W D, Ayres N and Cartinhour S. 2000. Diversity of microsatellites derived from genomic libraries and GenBank sequences in rice (Oryza sativa L.). Theoretical and Applied Genetics 100: 713-22. (Pubitemid 30217885)
3. Cordeiro G M, Casu R, McIntyre C L, Manners J M and Henry R J. 2001. Microsatellite markers from sugarcane (Saccharum spp) ESTs cross transferable to Erianthus and sorghum. Plant Science 160: 1115-23. (Pubitemid 32441207)
4. Dayanandan S, Bawa K S and Kesseli R V. 1997. Conservation of microsatellites among tropical trees (Leguminosae). American Journal of Botany 84: 1658-63. (Pubitemid 28029252)
5. Dhillon S L, Lawrence P K and Henry R J. 2005. The new use of Sorghum bicolor- derived SSR markers to evaluate genetic diversity in 17 Australian Sorghum species. Plant Genetic Resources: Characterization and Utilization 3, 19-28. (Pubitemid 40689714)
6. Gale M D and Devos K M. 1998. Comparative genetics in the grasses. Procedings of National Academy of Science USA 95: 1971-4. (Pubitemid 28145872)
7. Holton T A, Christopher J T, McClure L, Harker N and Henry R J. 2002. Identification and mapping of polymorphic SSR markers from expressed gene sequences of barley and wheat. Molecular Breeding 9: 63-71.
8. Kantety R V, Rota M L, Matthews D E and Sorrells M E. 2002. Data mining for simple sequence repeats in expressed sequence tags from barley, maize, rice, sorghum and wheat. Plant Molecular Biology 48: 501-10. (Pubitemid 34415968)
9. Kellogg E A. 1998. Relationships of cereal crops and other grasses. Proceedings of National Academy of Science, USA 95: 2005-10. (Pubitemid 28145881)
10. Liu K and Muse S V. 2005. PowerMarker: an integrated analysis environment for genetic marker analysis. Bioinformatics 21: 2128-9. (Pubitemid 40668066)
11. Perrier X, Flori A and Bonnot F. 2003. Data analysis methods. (in) Genetic Diversity of Cultivated Tropical Plants,pp 43-76. Hamon P, Seguin M, Perrier X and Glaszmann J C (Eds). Science Publishers. Montpellier.
12. Saha M C, Rouf mian M A, Eujayl I, Zwaniyzer J C, Wang L and May G D. 2004. Tall fescue EST-SSR markers with transferability across several grass species. Theoretical and Applied Genetics 109: 783-91. (Pubitemid 39211087)
13. Saitou N and Nei M. 1987. The neighbour-joining method - a new method for reconstructing phylogenetic trees. Molecular Biology and Evolution 4: 406-25.
14. Sourdille P, Tavaud M, Charmet G and Bernard M. 2001. Transferability of wheat micro satellites to diploid Triticeae species carrying the A, B and D genomes. Theoretical and Applied Genetics 103: 346-52. (Pubitemid 32770187)
15. Srinivas G, Satish K, Murali Mohan S, Nagaraja Reddy R, Madhusudhana R, Balakrishna D, Venkatesh Bhat B, Howarth C J and Seetharama N. 2008. Development of genic-microsatellite markers for sorghum staygreen QTL using a comparative genomic approach with rice. Theoretical and Applied Genetics 117: 283-96.
16. Thompson J D, Higgins D G and Gibson T J. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice. Nucleic Acids Research 22: 4673-80. (Pubitemid 24354800)
17. Varshney R K, Sigmund R, Borner A, Korzun V, Stein N, Sorrels M E, Langridge P and Graner A. 2005. Interspecific transferability and comparative mapping of barley EST-SSR markers in wheat, rye and rice. Plant Science 168: 195-202. (Pubitemid 39464780)
18. Wang Z, Mian M A R, Saha M C and Hopkins A A. 2005b. Use of Tall-fescue EST-SSR markers in phylogenetic analysis of cool season forage grasses. Genome 48: 637-47. (Pubitemid 41483423)