Age-structured genetic analysis reveals temporal and geographic variation within and between two cryptic rockfish species

Marine Ecology Progress Series

Volumn 442, Issue , 2011, Pages 201-215

  Burford, Martha O ^a,b   Carr, Mark H ^a   Bernardi, Giacomo ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b UNIVERSITY OF CENTRAL OKLAHOMA   (United States)

Author keywords

Cryptic species; Ecological genetics; Local adaptation; Range expansion; Sebastes spp.

Indexed keywords

AGE STRUCTURE; ANNUAL VARIATION; DISPERSAL; ESTIMATION METHOD; FISH; GENETIC ANALYSIS; GENETIC MARKER; GENETIC STRUCTURE; GEOGRAPHICAL VARIATION; JUVENILE; LARVA; LIFE HISTORY TRAIT; LOCAL ADAPTATION; PELAGIC ENVIRONMENT; SPATIOTEMPORAL ANALYSIS;

CALIFORNIA; UNITED STATES;

EID: 82955246351     PISSN: 01718630     EISSN: None     Source Type: Journal    
DOI: 10.3354/meps09329     Document Type: Article

References (52)

1. Ammann AJ (2004) SMURFs: Standard monitoring units for the recruitment of temperate reef fishes. J Exp Mar Biol Ecol 299: 135-154 (Pubitemid 38192795)
2. Anderson TW, CarrMH (1998) BINCKE: A highly efficient net for collecting reef fishes. Environ Biol Fishes 51: 111-115 (Pubitemid 28076937)
3. Buonaccorsi VP, Kimbrell CA, Lynn EA, Vetter RD (2002) Population structure of copper rockfish (Sebastes caurinus) reflects postglacial colonization and contemporary patterns of larval dispersal. Can J Fish Aquat Sci 59: 1374-1384 (Pubitemid 35374396)
4. Buonaccorsi VP, Westerman M, Stannard J, Kimbrell C, Lynn E, Vetter RD (2004) Molecular genetic structure suggests limited larval dispersal in grass rockfish, Sebastes rastrelliger. Mar Biol 145: 779-788 (Pubitemid 39384697)
5. BurfordMO (2009) Demographic history, geographic distribution and reproductive isolation of distinct lineages of blue rockfish (Sebastes mystinus), a marine fish with a high dispersal potential. J Evol Biol 22: 1471-1486
6. Burford MO, Bernardi G (2008) Incipient speciation within a subgenus of rockfish (Sebastosomus) provides evidence of recent radiations within an ancient species flock. Mar Biol 154: 701-717
7. Burford MO, Larson RJ (2007) Genetic heterogeneity in a single year-class from a panmictic population of adult blue rockfish (Sebastes mystinus). Mar Biol 151: 451-465 (Pubitemid 46466245)
8. Burford MO, Bernardi G, Carr MH (2011) Analysis of individual year-classes of a marine fish reveals little evidence of first generation hybrids between cryptic species in sympatric regions. Mar Biol 158: 1815-1827
9. Caselle JE, Carr MH, Malone D, Wilson JR, Wendt DE (2010) Can we predict interannual and regional variation in delivery of pelagic juveniles to nearshore populations of rockfishes (genus Sebastes) using simple proxies of ocean conditions? Cal Coop Ocean Fish Invest Rep 51: 91-105
10. Cowen RK, Sponaugle S (2009) Larval dispersal and marine population connectivity. Annu Rev Mar Sci 1: 443-466
11. Cowen RK, Gawarkiewicz G, Pineda J, Thorrold SR, Werner FE (2007) Connectivity in marine systems: An overview. Oceanography 20: 14-21
12. Edmands S, Moberg PE, Burton RS (1996) Allozyme and mitochondrial DNA evidence of population subdivision in the purple sea urchin Strongylocentrotus purpuratus. Mar Biol 126: 443-450
13. Evanno G, Regnaut S, Goudet J (2005) Detecting the number of clusters of individuals using the software STRUCTURE: A simulation study. Mol Ecol 14: 2611-2620 (Pubitemid 40886055)
14. Falush D, Stephens M, Pritchard JK (2003) Inference of population structure using multilocus genotype data: Linked loci and correlated allele frequencies. Genetics 164: 1567-1587 (Pubitemid 37102217)
15. Flowers JM, Schroeter SC, Burton RS (2002) The recruitment sweepstakes has many winners: Genetic evidence from the sea urchin Strongylocentrotus purpuratus. Evolution 56: 1445-1453 (Pubitemid 34881595)
16. Goudet J (1995) FSTAT (Version 1.2): A computer program to calculate F-statistics. J Hered 86: 485-486
17. Goudet J (1999) PCA-GEN for Windows. University of Lausanne, Lausanne
18. Gundelfinger P (2005) Regional variation in year-class structure of blue rockfish (Sebastes mystinus). Master's thesis, San Francisco State University, San Francisco, CA Guo SW,
19. Thompson EA (1992) Performing the exact test of Hardy-Weinberg proportion for multiple alleles. Biometrics 48: 361-372
20. Hedgecock D, Hutchinson ES, Li G, Sly FL, Nelson K (1994) The central stock of northern anchovy (Engraulis mordax) is not a randomly mating population. Cal Coop Ocean Fish Invest Rep 35: 121-136
21. Hess JE, Vetter RD, Moran P (2011) A steep genetic cline in yellowtail rockfish, Sebastes flavidus, suggests regional isolation across the Cape Mendocino faunal break. Can J Fish Aquat Sci 68: 89-104
22. Hyde JR, Vetter RD (2007) The origin, evolution, and diversification of rockfishes of the genus Sebastes (Cuvier). Mol Phylogenet Evol 44: 790-811 (Pubitemid 47048926)
23. Hyde JR, Kimbrell CA, Burdick JE, Lynn EA, Vetter RD (2008) Cryptic speciation in the vermilion rockfish (Sebastes miniatus) and the role of bathymetry in the speciation process. Mol Ecol 17: 1122-1136 (Pubitemid 351197371)
24. Laroche WA, Richardson SL (1981) Development of larvae and juveniles of the rockfishes Sebastes entomelas and S. zacentrus (family Scorpaenidae) and occurrence off Oregon, with notes on head spines of S. mystinus, S. flavidus, and S. melanops. Fish Bull 79: 215-230
25. Larson RJ, Lenarz WH, Ralston S (1994) The distribution of pelagic juvenile rockfish of the genus Sebastes in the upwelling region off central California. Cal Coop Ocean Fish Invest Rep 35: 175-221
26. Love MS, Caselle JE, Herbinson K (1998) Decline in near - shore rockfish recruitment and populations in the southern California Bight as measured by impingement rates in coastal electrical power generating stations. Fish Bull 96: 492-501 (Pubitemid 28371536)
27. Love MS, Yoklavich M, Thorsteinson L (2002) The rockfishes of the northeast Pacific. University of California Press, Berkeley, CA
28. Miller DJ, Lea RN (1972) Guide to coastal marine fishes of California. Calif Dep Fish Game Fish Bull 157: 1-235
29. Miller AK, Sydeman WJ (2004) Rockfish response to low-frequency ocean climate change as revealed by the diet of a marine bird over multiple time scales. Mar Ecol Prog Ser 281: 207-216 (Pubitemid 39569284)
30. Miller JA, Banks MA, Gomez-Uchida D, Shanks AL (2005) A comparison of population structure in black rockfish (Sebastes melanops) as determined with otolith microchemistry and microsatellite DNA. Can J Fish Aquat Sci 62: 2189-2198 (Pubitemid 43240680)
31. Mills KL, Laidig T, Ralston S, Sydeman WJ (2007) Diets of top predators indicate pelagic juvenile rockfish (Sebastes spp.) abundance in the California Current System. Fish Oceanogr 16: 273-283 (Pubitemid 46634501)
32. Moberg PE, Burton RS (2000) Genetic heterogeneity among adult and recruit red sea urchins, Strongylocentrotus franciscanus. Mar Biol 136: 773-784 (Pubitemid 30437847)
33. Murphree T, Bograd SJ, Schwing FB, Ford B (2003) Large scale atmosphere-ocean anomalies in the northeast Pacific during 2002. Geophys Res Lett 30: 8026
34. Nei M (1987) Molecular evolutionary genetics. Columbia University Press, New York, NY
35. Palumbi SR (2003) Population genetics, demographic connectivity, and the design of marine reserves. Ecol Appl 13: S146-S158 (Pubitemid 36872574)
36. Peterson WT, Schwing FB (2003) A new climate regime in the northeast pacific ecosystems. Geophys Res Lett 30: 1896
37. Pritchard JK, Stephens M, Donnelly P (2000) Inference of population structure using multilocus genotype data. Genetics 155: 945-959 (Pubitemid 30397141)
38. Raymond M, Rousset F (1995a) Genepop (Version 1.2). Population- genetics software for exact tests and ecumenicism. J Hered 86: 248-249
39. Raymond M, Rousset F (1995b) An exact test for population differentiation. Evolution 49: 1280-1283 (Pubitemid 3025486)
40. Rice W (1989) Analyzing tables of statistical tests. Evolution 43: 223-225
41. Roughgarden J, Pennington JT, Stoner D, Alexander S, Miller K (1991) Collisions of upwelling fronts with the intertidal zone: The cause of recruitment pulses in barnacle populations of central California. Acta Oecol Int J Ecol 12: 35-51
42. Ruzzante DE, Taggart CT, Cook D, Goddard SV (1997) Genetic differentiation between inshore and offshore Atlantic cod (Gadus morhua) off Newfoundland: A test and evidence of temporal stability. Can J Fish Aquat Sci 54: 2700-2708 (Pubitemid 28159217)
43. Selkoe KA, Henzler CM, Gaines SD (2008) Seascape genetics and the spatial ecology of marine populations. Fish Fish 9: 363-377
44. Sivasundar A, Palumbi SR (2010) Life history, ecology and the biogeography of strong genetic breaks among 15 species of Pacific rockfish, Sebastes. Mar Biol 157: 1433-1452
45. Sokal RR, Rohlf FJ (1995) Biometry. W.H. Freeman and Co., New York, NY
46. Stephens JS Jr, Morris PA, Pondella DJ, Loonce TA, Jordan GA (1994) Overview of the dynamics of an urban artificial reef fish assemblage at King Harbor, USA, 1974- 1991: A recruitment driven system. Bull Mar Sci 55: 1224-1239
47. Waples RS (1987) A multispecies approach to the analysis of gene flow in marine shore fishes. Evolution 41: 385-400
48. Wares JP, Gaines SD, Cunningham CW (2001) A comparative study of asymmetric migration events across a marine biogeographic boundary. Evolution 55: 295-306 (Pubitemid 32228615)
49. Weir BS, Cockerham CC (1984) Estimating F-Statistics for the analysis of population-structure. Evolution 38: 1358-1370
50. Westerman ME, Buonaccorsi VP, Stannard JA, Galver L and others (2005) Cloning and characterization of novel microsatellite DNA markers for the grass rockfish, Sebastes rastrelliger, and cross-species amplification in 10 related Sebastes spp. Mol Ecol Notes 5: 74-76 (Pubitemid 40350884)
51. Wing SR, Botsford LW, Largier JL, Morgan LE (1995a) Spatial structure of relaxation events and crab settlement in the northern California upwelling system. Mar Ecol Prog Ser 128: 199-211 (Pubitemid 26454186)
52. Wing SR, Largier JL, Botsford LW, Quinn JF (1995b) Settlement and transport of benthic invertebrates in an intermittent upwelling region. Limnol Oceanogr 40: 316-329 (Pubitemid 26447634)