-
1
-
-
79551534165
-
Diverse retrotransposon families and an AT-rich satellite DNA revealed in giant genomes of Fritillaria lilies
-
10.1093/aob/mcq235 21156758
-
K Ambrožová T Mandáková P Bureš, et al. 2011 Diverse retrotransposon families and an AT-rich satellite DNA revealed in giant genomes of Fritillaria lilies Ann Bot 107 255 268 10.1093/aob/mcq235 21156758
-
(2011)
Ann Bot
, vol.107
, pp. 255-268
-
-
Ambrožová, K.1
Mandáková, T.2
Bureš, P.3
-
2
-
-
79251632958
-
The genome of Theobroma cacao
-
10.1038/ng.736 1:CAS:528:DC%2BC3cXhs1Wis7zE 21186351
-
X Argout J Salse J-M Aury, et al. 2011 The genome of Theobroma cacao Nat Genet 43 101 108 10.1038/ng.736 1:CAS:528:DC%2BC3cXhs1Wis7zE 21186351
-
(2011)
Nat Genet
, vol.43
, pp. 101-108
-
-
Argout, X.1
Salse, J.2
Aury, J.-M.3
-
3
-
-
84882468079
-
Genome size evolution in plants
-
T.R. Gregory (eds). Elsevier New York. 10.1016/B978-012301463-4/50004-8
-
Bennett MD, Leitch IJ (2005a) Genome size evolution in plants. In: Gregory TR (ed) The evolution of the genome. Elsevier, New York, pp 89-162
-
(2005)
The Evolution of the Genome
, pp. 89-162
-
-
Bennett, M.D.1
Leitch, I.J.2
-
4
-
-
21644481551
-
Nuclear DNA amounts in angiosperms: Progress, problems and prospects
-
DOI 10.1093/aob/mci003
-
MD Bennett IJ Leitch 2005 Nuclear DNA amounts in angiosperms-progress, problems and prospects Ann Bot 95 45 90 10.1093/aob/mci003 1:CAS:528: DC%2BD2MXht1Kitbk%3D 15596457 (Pubitemid 41214450)
-
(2005)
Annals of Botany
, vol.95
, Issue.1
, pp. 45-90
-
-
Bennett, M.D.1
Leitch, I.J.2
-
6
-
-
79952152627
-
Nuclear DNA amounts in angiosperms: Targets, trends and tomorrow
-
10.1093/aob/mcq258 1:CAS:528:DC%2BC3MXis1egtbo%3D 21257716
-
MD Bennett IJ Leitch 2011 Nuclear DNA amounts in angiosperms: targets, trends and tomorrow Ann Bot 107 467 590 10.1093/aob/mcq258 1:CAS:528: DC%2BC3MXis1egtbo%3D 21257716
-
(2011)
Ann Bot
, vol.107
, pp. 467-590
-
-
Bennett, M.D.1
Leitch, I.J.2
-
7
-
-
0017316711
-
Nuclear DNA amounts in angiosperms
-
10.1098/rstb.1976.0044 1:CAS:528:DyaE28XkslCrtrc%3D 6977
-
MD Bennett JB Smith 1976 Nuclear DNA amounts in angiosperms Philos Trans R Soc Lond B Biol Sci 274 227 274 10.1098/rstb.1976.0044 1:CAS:528: DyaE28XkslCrtrc%3D 6977
-
(1976)
Philos Trans R Soc Lond B Biol Sci
, vol.274
, pp. 227-274
-
-
Bennett, M.D.1
Smith, J.B.2
-
8
-
-
0000081772
-
Nuclear DNA amounts in angiosperms
-
10.1098/rstb.1991.0120 1:CAS:528:DyaK38XisFajurc%3D
-
MD Bennett JB Smith 1991 Nuclear DNA amounts in angiosperms Philos Trans R Soc Lond B Biol Sci 334 309 345 10.1098/rstb.1991.0120 1:CAS:528: DyaK38XisFajurc%3D
-
(1991)
Philos Trans R Soc Lond B Biol Sci
, vol.334
, pp. 309-345
-
-
Bennett, M.D.1
Smith, J.B.2
-
9
-
-
0037381673
-
Comparisons with Caenorhabditis (∼100 Mb) and Drosophila (∼175 Mb) using flow cytometry show genome size in Arabidopsis to be ∼157 Mb and thus ∼25% larger than the Arabidopsis genome initiative estimate of ∼125 Mb
-
DOI 10.1093/aob/mcg057
-
MD Bennett IJ Leitch HJ Price JS Johnston 2003 Comparisons with Caenorhabditis (100 Mb) and Drosophila (175 Mb) using flow cytometry show genome size in Arabidopsis to be 157 Mb and thus 25% larger than the Arabidopsis Genome Initiative estimate of 125 Mb Ann Bot 91 547 557 10.1093/aob/mcg057 1:CAS:528:DC%2BD3sXjsVyitr8%3D 12646499 (Pubitemid 36391813)
-
(2003)
Annals of Botany
, vol.91
, Issue.5
, pp. 547-557
-
-
Bennett, M.D.1
Leitch, I.J.2
Price, H.J.3
Johnston, J.S.4
-
10
-
-
0036021693
-
Mechanisms and rates of genome expansion and contraction in flowering plants
-
DOI 10.1023/A:1016015913350
-
JL Bennetzen 2002 Mechanisms and rates of genome expansion and contraction in flowering plants Genetica 115 29 36 10.1023/A:1016015913350 1:CAS:528:DC%2BD38XkvVaisLg%3D 12188046 (Pubitemid 34842168)
-
(2002)
Genetica
, vol.115
, Issue.1
, pp. 29-36
-
-
Bennetzen, J.L.1
-
11
-
-
77953930032
-
Small RNAs, DNA methylation and transposable elements in wheat
-
10.1186/1471-2164-11-408 20584339
-
D Cantu LS Vanzetti A Sumner, et al. 2010 Small RNAs, DNA methylation and transposable elements in wheat BMC Genomics 11 408 10.1186/1471-2164-11-408 20584339
-
(2010)
BMC Genomics
, vol.11
, pp. 408
-
-
Cantu, D.1
Vanzetti, L.S.2
Sumner, A.3
-
12
-
-
77956656511
-
Draft genome sequence of the oilseed species Ricinus communis
-
10.1038/nbt.1674 1:CAS:528:DC%2BC3cXhtVGgtb3E 20729833
-
AP Chan J Crabtree Q Zhao, et al. 2010 Draft genome sequence of the oilseed species Ricinus communis Nat Biotechnol 28 951 959 10.1038/nbt.1674 1:CAS:528:DC%2BC3cXhtVGgtb3E 20729833
-
(2010)
Nat Biotechnol
, vol.28
, pp. 951-959
-
-
Chan, A.P.1
Crabtree, J.2
Zhao, Q.3
-
13
-
-
0036061848
-
Genome size reduction through illegitimate recombination counteracts genome expansion in Arabidopsis
-
DOI 10.1101/gr.132102
-
KM Devos JKM Brown JL Bennetzen 2002 Genome size reduction through illegitimate recombination counteracts genome expansion in Arabidopsis Genome Res 12 1075 1079 10.1101/gr.132102 1:CAS:528:DC%2BD38XlsVWgsr0%3D 12097344 (Pubitemid 34785200)
-
(2002)
Genome Research
, vol.12
, Issue.7
, pp. 1075-1079
-
-
Devos, K.M.1
Brown, J.K.M.2
Bennetzen, J.L.3
-
14
-
-
0347275780
-
Nuclear DNA content and genome size of trout and human
-
10.1002/cyto.a.10013
-
J Doležel J Bartoš H Voglmayr J Greilhuber 2003 Nuclear DNA content and genome size of trout and human Cytometry A 51A 127 128 10.1002/cyto.a.10013
-
(2003)
Cytometry A
, vol.51
, pp. 127-128
-
-
Doležel, J.1
Bartoš, J.2
Voglmayr, H.3
Greilhuber, J.4
-
15
-
-
38449104378
-
Estimation of nuclear DNA content in plants using flow cytometry
-
DOI 10.1038/nprot.2007.310, PII NPROT.2007.310
-
J Doležel J Greilhuber J Suda 2007 Estimation of nuclear DNA content in plants using flow cytometry Nat Protoc 2 2233 2244 10.1038/nprot.2007.310 17853881 (Pubitemid 351565863)
-
(2007)
Nature Protocols
, vol.2
, Issue.9
, pp. 2233-2244
-
-
Dolezel, J.1
Greilhuber, J.2
Suda, J.3
-
16
-
-
77955689247
-
Evolutionary conservation, diversity and specificity of LTR-retrotransposons in flowering plants: Insights from genome-wide analysis and multi-specific comparison
-
10.1111/j.1365-313X.2010.04263.x 1:CAS:528:DC%2BC3cXhtFegtrbJ 20525006
-
J Du Z Tian CS Hans, et al. 2010 Evolutionary conservation, diversity and specificity of LTR-retrotransposons in flowering plants: insights from genome-wide analysis and multi-specific comparison Plant J 63 584 598 10.1111/j.1365-313X.2010.04263.x 1:CAS:528:DC%2BC3cXhtFegtrbJ 20525006
-
(2010)
Plant J
, vol.63
, pp. 584-598
-
-
Du, J.1
Tian, Z.2
Hans, C.S.3
-
17
-
-
42349096534
-
Transposable elements and the evolution of regulatory networks
-
DOI 10.1038/nrg2337, PII NRG2337
-
C Feschotte 2008 Transposable elements and the evolution of regulatory networks Nat Rev Genet 9 397 405 10.1038/nrg2337 1:CAS:528:DC%2BD1cXkvVOhs7k%3D 18368054 (Pubitemid 351556062)
-
(2008)
Nature Reviews Genetics
, vol.9
, Issue.5
, pp. 397-405
-
-
Feschotte, C.1
-
18
-
-
37549029474
-
DNA transposons and the evolution of eukaryotic genomes
-
10.1146/annurev.genet.40.110405.090448 1:CAS:528:DC%2BD1cXns1Sisw%3D%3D 18076328
-
F Feschotte EJ Pritham 2007 DNA transposons and the evolution of eukaryotic genomes Annu Rev Genet 41 331 368 10.1146/annurev.genet.40.110405. 090448 1:CAS:528:DC%2BD1cXns1Sisw%3D%3D 18076328
-
(2007)
Annu Rev Genet
, vol.41
, pp. 331-368
-
-
Feschotte, F.1
Pritham, E.J.2
-
19
-
-
79751533742
-
Crop genome sequencing: Lessons and rationales
-
10.1016/j.tplants.2010.10.005 1:CAS:528:DC%2BC3MXhvFKit7w%3D 21081278
-
C Feuillet JE Leach J Rogers PS Schnable K Eversole 2011 Crop genome sequencing: lessons and rationales Trends Plant Sci 16 77 88 10.1016/j.tplants.2010.10.005 1:CAS:528:DC%2BC3MXhvFKit7w%3D 21081278
-
(2011)
Trends Plant Sci
, vol.16
, pp. 77-88
-
-
Feuillet, C.1
Leach, J.E.2
Rogers, J.3
Schnable, P.S.4
Eversole, K.5
-
20
-
-
80051688000
-
Field guide to next-generation DNA sequencers
-
doi: 10.1111/j.1755-0998.2011.03024.x
-
Glenn TC (2011) Field guide to next-generation DNA sequencers. Mol Ecol Resour. doi: 10.1111/j.1755-0998.2011.03024.x
-
(2011)
Mol Ecol Resour.
-
-
Glenn, T.C.1
-
21
-
-
21644481272
-
Intraspecific variation in genome size in angiosperms: Identifying its existence
-
DOI 10.1093/aob/mci004
-
J Greilhuber J Doležel MA Lysak MD Bennett 2005 The origin, evolution and proposed stabilization of the terms 'Genome Size' and 'C-Value' to describe nuclear DNA contents Ann Bot 95 91 98 10.1093/aob/mci004 1:CAS:528:DC%2BD2MXht1KitbY%3D 15596458 (Pubitemid 41214451)
-
(2005)
Annals of Botany
, vol.95
, Issue.1
, pp. 91-98
-
-
Greilhuber, J.1
-
22
-
-
33745888167
-
Smallest angiosperm genomes found in Lentibulariaceae, with chromosomes of bacterial size
-
DOI 10.1055/s-2006-924101
-
J Greilhuber T Borsch K Müller A Worberg S Porembski W Barthlott 2006 Smallest angiosperm genomes found in Lentibulariaceae with chromosomes of bacterial size Plant Biol 8 770 777 10.1055/s-2006-924101 1:CAS:528: DC%2BD2sXht12msrs%3D 17203433 (Pubitemid 46092475)
-
(2006)
Plant Biology
, vol.8
, Issue.6
, pp. 770-777
-
-
Greilhuber, J.1
Borsch, T.2
Muller, K.3
Worberg, A.4
Porembski, S.5
Barthlott, W.6
-
23
-
-
77956811011
-
Recent insights into mechanisms of genome size change in plants
-
doi: 10.1155/2010/382732
-
Grover CE, Wendel JE (2010) Recent insights into mechanisms of genome size change in plants. J Bot doi: 10.1155/2010/382732
-
(2010)
J Bot
-
-
Grover, C.E.1
Wendel, J.E.2
-
24
-
-
33749389724
-
Differential lineage-specific amplification of transposable elements is responsible for genome size variation in Gossypium
-
DOI 10.1101/gr.5282906
-
JS Hawkins HR Kim JD Nason RA Wing JF Wendel 2006 Differential lineage-specific amplification of transposable elements is responsible for genome size variation in Gossypium Genome Res 16 1252 1261 10.1101/gr.5282906 1:CAS:528:DC%2BD28XhtVOmtrbN 16954538 (Pubitemid 44506958)
-
(2006)
Genome Research
, vol.16
, Issue.10
, pp. 1252-1261
-
-
Hawkins, J.S.1
Kim, H.2
Nason, J.D.3
Wing, R.A.4
Wendel, J.F.5
-
25
-
-
43049159700
-
Repeated big bangs and the expanding universe: Directionality in plant genome size evolution
-
10.1016/j.plantsci.2008.03.015 1:CAS:528:DC%2BD1cXlslynsLw%3D
-
JS Hawkins CE Grover JF Wendel 2008 Repeated big bangs and the expanding universe: directionality in plant genome size evolution Plant Sci 174 557 562 10.1016/j.plantsci.2008.03.015 1:CAS:528:DC%2BD1cXlslynsLw%3D
-
(2008)
Plant Sci
, vol.174
, pp. 557-562
-
-
Hawkins, J.S.1
Grover, C.E.2
Wendel, J.F.3
-
26
-
-
70449601785
-
Rapid DNA loss as a counterbalance to genome expansion through retrotransposon proliferation in plants
-
10.1073/pnas.0904339106 1:CAS:528:DC%2BD1MXhsVSjsLnM 19815511
-
JS Hawkins SR Proulx RA Rapp JF Wendel 2009 Rapid DNA loss as a counterbalance to genome expansion through retrotransposon proliferation in plants Proc Natl Acad Sci USA 106 17811 17816 10.1073/pnas.0904339106 1:CAS:528:DC%2BD1MXhsVSjsLnM 19815511
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 17811-17816
-
-
Hawkins, J.S.1
Proulx, S.R.2
Rapp, R.A.3
Wendel, J.F.4
-
27
-
-
79955468851
-
The Arabidopsis lyrata genome sequence and the basis of rapid genome size change
-
10.1038/ng.807 21478890
-
TT Hu P Pattyn EG Bakker, et al. 2011 The Arabidopsis lyrata genome sequence and the basis of rapid genome size change Nat Genet 43 476 481 10.1038/ng.807 21478890
-
(2011)
Nat Genet
, vol.43
, pp. 476-481
-
-
Hu, T.T.1
Pattyn, P.2
Bakker, E.G.3
-
28
-
-
70649085835
-
The genome of the cucumber, Cucumis sativus L
-
10.1038/ng.475 1:CAS:528:DC%2BD1MXhtlers7rJ 19881527
-
S Huang R Li Z Zhang, et al. 2009 The genome of the cucumber, Cucumis sativus L Nat Genet 41 1275 1283 10.1038/ng.475 1:CAS:528:DC%2BD1MXhtlers7rJ 19881527
-
(2009)
Nat Genet
, vol.41
, pp. 1275-1283
-
-
Huang, S.1
Li, R.2
Zhang, Z.3
-
29
-
-
84907150192
-
The map-based sequence of the rice genome
-
DOI 10.1038/nature03895
-
International Rice Genome Sequencing Project 2005 The map-based sequence of the rice genome Nature 436 793 800 10.1038/nature03895 (Pubitemid 41160631)
-
(2005)
Nature
, vol.436
, Issue.7052
, pp. 793-800
-
-
Sasaki, T.1
-
30
-
-
0036021699
-
Transposable elements and the evolution of genome size in eukaryotes
-
DOI 10.1023/A:1016072014259
-
MG Kidwell 2002 Transposable elements and the evolution of genome size in eukaryotes Genetica 115 49 63 10.1023/A:1016072014259 1:CAS:528: DC%2BD38XkvVaisLY%3D 12188048 (Pubitemid 34842170)
-
(2002)
Genetica
, vol.115
, Issue.1
, pp. 49-63
-
-
Kidwell, M.G.1
-
31
-
-
33646566617
-
Transposable elements
-
T.R. Gregory (eds). Elsevier New York. 10.1016/B978-012301463-4/50005-X
-
Kidwell MG (2005) Transposable elements. In: Gregory TR (ed) The evolution of the genome. Elsevier, New York, pp 165-221
-
(2005)
The Evolution of the Genome
, pp. 165-221
-
-
Kidwell, M.G.1
-
32
-
-
77954270761
-
The Pinus taeda genome is characterized by diverse and highly diverged repetitive sequences
-
10.1186/1471-2164-11-420 20609256
-
A Kovach JL Wegrzyn G Parra, et al. 2010 The Pinus taeda genome is characterized by diverse and highly diverged repetitive sequences BMC Genomics 11 420 10.1186/1471-2164-11-420 20609256
-
(2010)
BMC Genomics
, vol.11
, pp. 420
-
-
Kovach, A.1
Wegrzyn, J.L.2
Parra, G.3
-
33
-
-
78649925356
-
Genome size and species diversification
-
10.1007/s11692-010-9093-4
-
K Kraaijeveld 2010 Genome size and species diversification Evol Biol 37 227 233 10.1007/s11692-010-9093-4
-
(2010)
Evol Biol
, vol.37
, pp. 227-233
-
-
Kraaijeveld, K.1
-
34
-
-
35448997317
-
Genome size and its uses: The impact of flow cytometry
-
J. Doležel J. Greilhuber J. Suda (eds). Wiley New York
-
Leitch IJ, Bennett MD (2007) Genome size and its uses: the impact of flow cytometry. In: Doležel J, Greilhuber J, Suda J (eds) Flow cytometry with plant cells: analysis of genes, chromosomes and genomes. Wiley, New York, pp 153-176
-
(2007)
Flow Cytometry with Plant Cells: Analysis of Genes, Chromosomes and Genomes
, pp. 153-176
-
-
Leitch, I.J.1
Bennett, M.D.2
-
35
-
-
20344395262
-
Evolution of DNA amounts across land plants (Embryophyta)
-
DOI 10.1093/aob/mci014
-
IJ Leitch DE Soltis PS Soltis MD Bennett 2005 Evolution of DNA amounts across land plants (Embryophyta) Ann Bot Ann Bot 95 207 217 1:CAS:528: DC%2BD2MXht1KiurY%3D (Pubitemid 41214461)
-
(2005)
Annals of Botany
, vol.95
, Issue.1
, pp. 207-217
-
-
Leitch, I.J.1
Soltis, D.E.2
Soltis, P.S.3
Bennett, M.D.4
-
38
-
-
66449124318
-
Epigenetic regulation of transposable elements in plants
-
10.1146/annurev.arplant.59.032607.092744 1:CAS:528:DC%2BD1MXntFGlsrY%3D 19007329
-
D Lisch 2009 Epigenetic regulation of transposable elements in plants Annu Rev Plant Biol 60 43 66 10.1146/annurev.arplant.59.032607.092744 1:CAS:528:DC%2BD1MXntFGlsrY%3D 19007329
-
(2009)
Annu Rev Plant Biol
, vol.60
, pp. 43-66
-
-
Lisch, D.1
-
39
-
-
38349101340
-
Repetitive DNA in pea (Pisum sativum L.) genome: Comprehensive characterization using 454 sequencing and comparison to soybean and Medicago truncatula
-
10.1186/1471-2164-8-427 18031571
-
J Macas P Neumann A Navrátilová 2007 Repetitive DNA in pea (Pisum sativum L.) genome: comprehensive characterization using 454 sequencing and comparison to soybean and Medicago truncatula BMC Genomics 8 427 10.1186/1471-2164-8-427 18031571
-
(2007)
BMC Genomics
, vol.8
, pp. 427
-
-
MacAs, J.1
Neumann, P.2
Navrátilová, A.3
-
40
-
-
52949096084
-
Next-generation DNA sequencing methods
-
10.1146/annurev.genom.9.081307.164359 1:CAS:528:DC%2BD1cXht1SnsbbJ 18576944
-
ER Mardis 2008 Next-generation DNA sequencing methods Annu Rev Genomics Hum Genet 9 387 402 10.1146/annurev.genom.9.081307.164359 1:CAS:528: DC%2BD1cXht1SnsbbJ 18576944
-
(2008)
Annu Rev Genomics Hum Genet
, vol.9
, pp. 387-402
-
-
Mardis, E.R.1
-
41
-
-
72849144434
-
Sequencing technologies-The next-generation
-
10.1038/nrg2626 1:CAS:528:DC%2BD1MXhsFOht7fO 19997069
-
ML Metzker 2010 Sequencing technologies-the next-generation Nat Rev Genet 11 31 46 10.1038/nrg2626 1:CAS:528:DC%2BD1MXhsFOht7fO 19997069
-
(2010)
Nat Rev Genet
, vol.11
, pp. 31-46
-
-
Metzker, M.L.1
-
42
-
-
42949157236
-
The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus)
-
DOI 10.1038/nature06856, PII NATURE06856
-
R Ming S Hou Y Feng, et al. 2008 The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus) Nature 452 991 996 10.1038/nature06856 1:CAS:528:DC%2BD1cXltVGrt7g%3D 18432245 (Pubitemid 351606145)
-
(2008)
Nature
, vol.452
, Issue.7190
, pp. 991-996
-
-
Ming, R.1
Hou, S.2
Feng, Y.3
Yu, Q.4
Dionne-Laporte, A.5
Saw, J.H.6
Senin, P.7
Wang, W.8
Ly, B.V.9
Lewis, K.L.T.10
Salzberg, S.L.11
Feng, L.12
Jones, M.R.13
Skelton, R.L.14
Murray, J.E.15
Chen, C.16
Qian, W.17
Shen, J.18
Du, P.19
Eustice, M.20
Tong, E.21
Tang, H.22
Lyons, E.23
Paull, R.E.24
Michael, T.P.25
Wall, K.26
Rice, D.W.27
Albert, H.28
Wang, M.-L.29
Zhu, Y.J.30
Schatz, M.31
Nagarajan, N.32
Acob, R.A.33
Guan, P.34
Blas, A.35
Wai, C.M.36
Ackerman, C.M.37
Ren, Y.38
Liu, C.39
Wang, J.40
Wang, J.41
Na, J.-K.42
Shakirov, E.V.43
Haas, B.44
Thimmapuram, J.45
Nelson, D.46
Wang, X.47
Bowers, J.E.48
Gschwend, A.R.49
Delcher, A.L.50
Singh, R.51
Suzuki, J.Y.52
Tripathi, S.53
Neupane, K.54
Wei, H.55
Irikura, B.56
Paidi, M.57
Jiang, N.58
Zhang, W.59
Presting, G.60
Windsor, A.61
Navajas-Perez, R.62
Torres, M.J.63
Feltus, F.A.64
Porter, B.65
Li, Y.66
Burroughs, A.M.67
Luo, M.-C.68
Liu, L.69
Christopher, D.A.70
Mount, S.M.71
Moore, P.H.72
Sugimura, T.73
Jiang, J.74
Schuler, M.A.75
Friedman, V.76
Mitchell-Olds, T.77
Shippen, D.E.78
Depamphilis, C.W.79
Palmer, J.D.80
Freeling, M.81
Paterson, A.H.82
Gonsalves, D.83
Wang, L.84
Alam, M.85
more..
-
43
-
-
84926961745
-
Evolution of the nuclear genome of ferns and lycophytes
-
C. Haufler T. Ranker (eds). Cambridge University Press Cambridge, UK
-
Nakazato T, Barker MS, Rieseberg LH, Gastony GJ (2008) Evolution of the nuclear genome of ferns and lycophytes. In: Haufler C, Ranker T (eds) The biology and evolution of ferns and lycophytes. Cambridge University Press, Cambridge, UK, pp 177-200
-
(2008)
The Biology and Evolution of Ferns and Lycophytes
, pp. 177-200
-
-
Nakazato, T.1
Barker, M.S.2
Rieseberg, L.H.3
Gastony, G.J.4
-
44
-
-
77954854627
-
Graph-based clustering and characterization of repetitive sequences in next-generation sequencing data
-
10.1186/1471-2105-11-378 20633259
-
P Novák P Neumann J Macas 2010 Graph-based clustering and characterization of repetitive sequences in next-generation sequencing data BMC Bioinformatics 11 378 10.1186/1471-2105-11-378 20633259
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 378
-
-
Novák, P.1
Neumann, P.2
MacAs, J.3
-
45
-
-
0030046280
-
Flow cytometric determination of genome size in Pinus
-
10.1016/0168-9452(96)04356-7
-
IEW O'Brien DR Smith RC Gardner BG Murray 1996 Flow cytometric determination of genome size in Pinus Plant Sci 115 91 99 10.1016/0168-9452(96) 04356-7
-
(1996)
Plant Sci
, vol.115
, pp. 91-99
-
-
O'Brien, I.E.W.1
Smith, D.R.2
Gardner, R.C.3
Murray, B.G.4
-
46
-
-
0036321736
-
Nuclear DNA C-values in 30 species double the familial representation in pteridophytes
-
DOI 10.1093/aob/mcf167
-
R Obermayer IJ Leitch L Hanson MD Bennett 2002 Nuclear DNA C-values in 30 species double the familial representation in Pteridophytes Ann Bot 90 209 217 10.1093/aob/mcf167 1:CAS:528:DC%2BD38XntVGrurw%3D 12197518 (Pubitemid 34842199)
-
(2002)
Annals of Botany
, vol.90
, Issue.2
, pp. 209-217
-
-
Obermayer, R.1
Leitch, I.J.2
Hanson, L.3
Bennett, M.D.4
-
47
-
-
70349339300
-
Transposable elements: Powerful facilitators of evolution
-
10.1002/bies.200800219 1:CAS:528:DC%2BD1MXpsFGqt7w%3D 19415638
-
KR Oliver WK Greene 2009 Transposable elements: powerful facilitators of evolution Bioessays 31 703 714 10.1002/bies.200800219 1:CAS:528: DC%2BD1MXpsFGqt7w%3D 19415638
-
(2009)
Bioessays
, vol.31
, pp. 703-714
-
-
Oliver, K.R.1
Greene, W.K.2
-
48
-
-
70349312354
-
CHiP-seq: Advantages and challenges of a maturing technology
-
10.1038/nrg2641 1:CAS:528:DC%2BD1MXhtFCqurjO 19736561
-
PJ Park 2009 CHiP-seq: advantages and challenges of a maturing technology Nat Rev Genet 10 669 680 10.1038/nrg2641 1:CAS:528:DC%2BD1MXhtFCqurjO 19736561
-
(2009)
Nat Rev Genet
, vol.10
, pp. 669-680
-
-
Park, P.J.1
-
49
-
-
77952476959
-
Insights from the comparison of plant genome sequences
-
10.1146/annurev-arplant-042809-112235 1:CAS:528:DC%2BC3cXnslSjsLs%3D 20441528
-
AH Paterson M Freeling H Tang X Wang 2010 Insights from the comparison of plant genome sequences Annu Rev Plant Biol 61 349 372 10.1146/annurev-arplant- 042809-112235 1:CAS:528:DC%2BC3cXnslSjsLs%3D 20441528
-
(2010)
Annu Rev Plant Biol
, vol.61
, pp. 349-372
-
-
Paterson, A.H.1
Freeling, M.2
Tang, H.3
Wang, X.4
-
50
-
-
77956816001
-
The largest eukaryotic genome of them all?
-
10.1111/j.1095-8339.2010.01072.x
-
J Pellicer MF Fay IL Leitch 2010 The largest eukaryotic genome of them all? Bot J Linn Soc 164 10 15 10.1111/j.1095-8339.2010.01072.x
-
(2010)
Bot J Linn Soc
, vol.164
, pp. 10-15
-
-
Pellicer, J.1
Fay, M.F.2
Leitch, I.L.3
-
51
-
-
33749392949
-
Doubling genome size without polyploidization: Dynamics of retrotransposition-driven genomic expansions in Oryza australiensis, a wild relative of rice
-
DOI 10.1101/gr.5290206
-
B Piegu R Guyot N Picault, et al. 2006 Doubling genome size without polyploidization: dynamics of retrotransposition-driven genomic expansions in Oryza australiensis, a wild relative of rice Genome Res 16 1262 1269 10.1101/gr.5290206 1:CAS:528:DC%2BD28XhtVOmtrbO 16963705 (Pubitemid 44506959)
-
(2006)
Genome Research
, vol.16
, Issue.10
, pp. 1262-1269
-
-
Piegu, B.1
Guyot, R.2
Picault, N.3
Roulin, A.4
Saniyal, A.5
Kim, H.6
Collura, K.7
Brar, D.S.8
Jackson, S.9
Wing, R.A.10
Panaud, O.11
-
53
-
-
80053180357
-
Next generation sequencing reveals genome downsizing in allotetraploid Nicotiana tabacum, predominantly through the elimination of paternally derived repetitive DNAs
-
Renny-Byfield S, Chester M, Kovařík A et al (2011) Next generation sequencing reveals genome downsizing in allotetraploid Nicotiana tabacum, predominantly through the elimination of paternally derived repetitive DNAs. Mol Biol Evol 28:2843-2854
-
(2011)
Mol Biol Evol
, vol.28
, pp. 2843-2854
-
-
Renny-Byfield S, C.1
-
54
-
-
53649100100
-
The development and impact of 454 sequencing
-
10.1038/nbt1485 1:CAS:528:DC%2BD1cXht1aisr3M 18846085
-
JM Rothberg JH Leamon 2008 The development and impact of 454 sequencing Nat Biotechnol 26 1117 1124 10.1038/nbt1485 1:CAS:528:DC%2BD1cXht1aisr3M 18846085
-
(2008)
Nat Biotechnol
, vol.26
, pp. 1117-1124
-
-
Rothberg, J.M.1
Leamon, J.H.2
-
55
-
-
78650868150
-
A window into third generation sequencing
-
10.1093/hmg/ddq416 1:CAS:528:DC%2BC3cXhsFSns77M 20858600
-
EE Schadt S Turner A Kasarskis 2010 A window into third generation sequencing Hum Mol Genet 19 R227 R240 10.1093/hmg/ddq416 1:CAS:528: DC%2BC3cXhsFSns77M 20858600
-
(2010)
Hum Mol Genet
, vol.19
-
-
Schadt, E.E.1
Turner, S.2
Kasarskis, A.3
-
56
-
-
77956279237
-
Assembly of large genomes using second-generation sequencing
-
10.1101/gr.101360.109 1:CAS:528:DC%2BC3cXhtFeru7rK 20508146
-
MC Schatz AL Delcher SL Salzberg 2010 Assembly of large genomes using second-generation sequencing Genome Res 20 1165 1173 10.1101/gr.101360.109 1:CAS:528:DC%2BC3cXhtFeru7rK 20508146
-
(2010)
Genome Res
, vol.20
, pp. 1165-1173
-
-
Schatz, M.C.1
Delcher, A.L.2
Salzberg, S.L.3
-
57
-
-
74549221016
-
Genome sequence of the palaeopolyploid soybean
-
10.1038/nature08670 1:CAS:528:DC%2BC3cXntVClsQ%3D%3D 20075913
-
J Schmutz SB Cannon J Schlueter, et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 463 178 183 10.1038/nature08670 1:CAS:528:DC%2BC3cXntVClsQ%3D%3D 20075913
-
(2010)
Nature
, vol.463
, pp. 178-183
-
-
Schmutz, J.1
Cannon, S.B.2
Schlueter, J.3
-
58
-
-
70450202132
-
The B73 maize genome: Complexity, diversity and dynamics
-
10.1126/science.1178534 1:CAS:528:DC%2BD1MXhsVentLvL 19965430
-
PS Schnable D Ware RS Fulton, et al. 2009 The B73 maize genome: complexity, diversity and dynamics Science 326 1112 1115 10.1126/science.1178534 1:CAS:528:DC%2BD1MXhsVentLvL 19965430
-
(2009)
Science
, vol.326
, pp. 1112-1115
-
-
Schnable, P.S.1
Ware, D.2
Fulton, R.S.3
-
59
-
-
53649106195
-
Next-generation DNA sequencing
-
10.1038/nbt1486 1:CAS:528:DC%2BD1cXht1aisrzK 18846087
-
J Shendure H Ji 2008 Next-generation DNA sequencing Nat Biotechnol 26 1135 1145 10.1038/nbt1486 1:CAS:528:DC%2BD1cXht1aisrzK 18846087
-
(2008)
Nat Biotechnol
, vol.26
, pp. 1135-1145
-
-
Shendure, J.1
Ji, H.2
-
60
-
-
79251636555
-
The genome of woodland strawberry (Fragaria vesca)
-
10.1038/ng.740 1:CAS:528:DC%2BC3cXhs1WisrnE 21186353
-
V Shulaev DL Sargent RN Crowhurst, et al. 2011 The genome of woodland strawberry (Fragaria vesca) Nat Genet 43 109 116 10.1038/ng.740 1:CAS:528:DC%2BC3cXhs1WisrnE 21186353
-
(2011)
Nat Genet
, vol.43
, pp. 109-116
-
-
Shulaev, V.1
Sargent, D.L.2
Crowhurst, R.N.3
-
61
-
-
33947303168
-
Transposable elements and the epigenetic regulation of the genome
-
DOI 10.1038/nrg2072, PII NRG2072
-
RK Slotkin RA Martienssen 2007 Transposable elements and the epigenetic regulation of the genome Nat Rev Genet 8 272 285 10.1038/nrg2072 1:CAS:528:DC%2BD2sXivVGkurw%3D 17363976 (Pubitemid 46439291)
-
(2007)
Nature Reviews Genetics
, vol.8
, Issue.4
, pp. 272-285
-
-
Slotkin, R.K.1
Martienssen, R.2
-
62
-
-
77953225899
-
Genomic and small RNA sequencing of Miscanthus × giganteus shows the utility of sorghum as a reference genome sequence for Andropogoneae grasses
-
10.1186/gb-2010-11-2-r12
-
K Swaminanthan MS Alabady K Varala, et al. 2010 Genomic and small RNA sequencing of Miscanthus × giganteus shows the utility of sorghum as a reference genome sequence for Andropogoneae grasses Genome Biol 11 R12 10.1186/gb-2010-11-2-r12
-
(2010)
Genome Biol
, vol.11
, pp. 12
-
-
Swaminanthan, K.1
Alabady, M.S.2
Varala, K.3
-
64
-
-
33644544362
-
Variation in nuclear DNA content in Malus species and cultivated apples
-
10.1139/g05-033 1:CAS:528:DC%2BD28XkslSlsA%3D%3D 16391698
-
TC Tatum S Stepanovic DP Biradar AL Rayburn SS Korban 2005 Variation in nuclear DNA content in Malus species and cultivated apples Genome 48 924 930 10.1139/g05-033 1:CAS:528:DC%2BD28XkslSlsA%3D%3D 16391698
-
(2005)
Genome
, vol.48
, pp. 924-930
-
-
Tatum, T.C.1
Stepanovic, S.2
Biradar, D.P.3
Rayburn, A.L.4
Korban, S.S.5
-
65
-
-
79961156380
-
Heavy metal pollution, selection, and genome size: The species of the Žerjav study revisited with flow cytometry
-
doi: 10.1155/2010/596542
-
Temsch EM, Temsch W, Ehrendorfer-Schratt L, Greilhuber J (2010) Heavy metal pollution, selection, and genome size: the species of the Žerjav study revisited with flow cytometry. J Bot doi: 10.1155/2010/596542
-
(2010)
J Bot
-
-
Temsch, E.M.1
Temsch, W.2
Ehrendorfer-Schratt, L.3
Greilhuber, J.4
-
66
-
-
79960095966
-
Genome size and transposable element content as determined by high-throughput sequencing in maize and Zea luxurians
-
Tenaillon MI, Hufford MB, Gaut BS, Ross-Ibarra J (2011) Genome size and transposable element content as determined by high-throughput sequencing in maize and Zea luxurians. Genome Biol Evol 3:219-229
-
(2011)
Genome Biol Evol
, vol.3
, pp. 219-229
-
-
Tenaillon, M.I.1
Hufford, M.B.2
Gaut, B.S.3
Ross-Ibarra, J.4
-
67
-
-
0034649566
-
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
-
DOI 10.1038/35048692
-
The Arabidopsis Genome Initiative 2000 Analysis of the genome sequence of the flowering plant Arabidopsis thaliana Nature 408 796 815 10.1038/35048692 (Pubitemid 32016083)
-
(2000)
Nature
, vol.408
, Issue.6814
, pp. 796-815
-
-
Kaul, S.1
Koo, H.L.2
Jenkins, J.3
Rizzo, M.4
Rooney, T.5
Tallon, L.J.6
Feldblyum, T.7
Nierman, W.8
Benito, M.-I.9
Lin, X.10
Town, C.D.11
Venter, J.C.12
Fraser, C.M.13
Tabata, S.14
Nakamura, Y.15
Kaneko, T.16
Sato, S.17
Asamizu, E.18
Kato, T.19
Kotani, H.20
Sasamoto, S.21
Ecker, J.R.22
Theologis, A.23
Federspiel, N.A.24
Palm, C.J.25
Osborne, B.I.26
Shinn, P.27
Conway, A.B.28
Vysotskaia, V.S.29
Dewar, K.30
Conn, L.31
Lenz, C.A.32
Kim, C.J.33
Hansen, N.F.34
Liu, S.X.35
Buehler, E.36
Altafi, H.37
Sakano, H.38
Dunn, P.39
Lam, B.40
Pham, P.K.41
Chao, Q.42
Nguyen, M.43
Yu, G.44
Chen, H.45
Southwick, A.46
Jeong Mi Lee47
Miranda, M.48
Toriumi, M.J.49
Davis, R.W.50
Wambutt, R.51
Murphy, G.52
Dusterhoft, A.53
Stiekema, W.54
Pohl, T.55
Entian, K.-D.56
Terryn, N.57
Volckaert, G.58
Salanoubat, M.59
Choisne, N.60
Rieger, M.61
Ansorge, W.62
Unseld, M.63
Fartmann, B.64
Valle, G.65
Artiguenave, F.66
Weissenbach, J.67
Quetier, F.68
Wilson, R.K.69
De La Bastide, M.70
Sekhon, M.71
Huang, E.72
Spiegel, L.73
Gnoj, L.74
Pepin, K.75
Murray, J.76
Johnson, D.77
Habermann, K.78
Dedhia, N.79
Parnell, L.80
Preston, R.81
Hillier, L.82
Chen, E.83
Marra, M.84
Martienssen, R.85
McCombie, W.R.86
Mayer, K.87
White, O.88
Bevan, M.89
Lemcke, K.90
Creasy, T.H.91
Bielke, C.92
Haas, B.93
Haase, D.94
Maiti, R.95
Rudd, S.96
Peterson, J.97
Schoof, H.98
Frishman, D.99
more..
-
68
-
-
76749150030
-
Genome sequencing and analysis of the model grass Brachypodium distachyon
-
The International Brachypodium Initiative. 10.1038/nature08747
-
The International Brachypodium Initiative 2010 Genome sequencing and analysis of the model grass Brachypodium distachyon Nature 463 763 768 10.1038/nature08747
-
(2010)
Nature
, vol.463
, pp. 763-768
-
-
-
69
-
-
73249153383
-
Do genetic recombination and gene density shape the pattern of DNA elimination in rice long terminal repeat retrotransposons
-
10.1101/gr.083899.108
-
Z Tian C Rizzon J Du, et al. 2009 Do genetic recombination and gene density shape the pattern of DNA elimination in rice long terminal repeat retrotransposons Genome Res 19 221 2230 10.1101/gr.083899.108
-
(2009)
Genome Res
, vol.19
, pp. 221-2230
-
-
Tian, Z.1
Rizzon, C.2
Du, J.3
-
70
-
-
77957560949
-
The genome of the domesticated apple (Malus × domestica Borkh.)
-
10.1038/ng.654 1:CAS:528:DC%2BC3cXhtVyiu73J 20802477
-
R Velasco A Zharkikh J Affourtit, et al. 2010 The genome of the domesticated apple (Malus × domestica Borkh.) Nat Genet 42 833 839 10.1038/ng.654 1:CAS:528:DC%2BC3cXhtVyiu73J 20802477
-
(2010)
Nat Genet
, vol.42
, pp. 833-839
-
-
Velasco, R.1
Zharkikh, A.2
Affourtit, J.3
-
71
-
-
33845186134
-
Analysis of retrotransposon structural diversity uncovers properties and propensities in angiosperm genome evolution
-
DOI 10.1073/pnas.0605618103
-
C Vitte JL Bennetzen 2006 Analysis of retrotransposon structural diversity uncovers properties and propensities in angiosperm genome evolution Proc Natl Acad Sci USA 103 17638 17643 10.1073/pnas.0605618103 1:CAS:528:DC%2BD28Xht1KnurnE 17101966 (Pubitemid 44852213)
-
(2006)
Proceedings of the National Academy of Sciences of the United States of America
, vol.103
, Issue.47
, pp. 17638-17643
-
-
Vitte, C.1
Bennetzen, J.L.2
-
72
-
-
33748936552
-
Turning junk into gold: Domestication of transposable elements and the creation of new genes in eukaryotes
-
DOI 10.1002/bies.20452
-
JN Volff 2006 Turning junk into gold: domestication of transposable elements and the creation of new genes in eukaryotes Bioessays 28 913 922 10.1002/bies.20452 1:CAS:528:DC%2BD28XhtVKqsrjM 16937363 (Pubitemid 44433754)
-
(2006)
BioEssays
, vol.28
, Issue.9
, pp. 913-922
-
-
Volff, J.-N.1
-
73
-
-
34347381116
-
Genome-wide comparative analysis of copia retrotransposons in Triticeae, rice, and Arabidopsis reveals conserved ancient evolutionary lineages and distinct dynamics of individual copia families
-
DOI 10.1101/gr.6214107
-
T Wicker B Keller 2007 Genome-wide comparative analysis of copia retrotransposons in Triticeae, rice, and Arabidopsis reveals conserved ancient evolutionary lineages and distinct dynamics of individual copia families Genome Res 17 1072 1081 10.1101/gr.6214107 1:CAS:528:DC%2BD2sXnvVWkurk%3D 17556529 (Pubitemid 47026354)
-
(2007)
Genome Research
, vol.17
, Issue.7
, pp. 1072-1081
-
-
Wicker, T.1
Keller, B.2
-
74
-
-
36249023071
-
A unified classification system for eukaryotic transposable elements
-
DOI 10.1038/nrg2165, PII NRG2165
-
T Wicker F Sabot A Hua-Van, et al. 2007 A unified classification system for eukaryotic transposable elements Nat Rev Genet 8 973 982 10.1038/nrg2165 1:CAS:528:DC%2BD2sXhtlajtrnF 17984973 (Pubitemid 350129169)
-
(2007)
Nature Reviews Genetics
, vol.8
, Issue.12
, pp. 973-982
-
-
Wicker, T.1
Sabot, F.2
Hua-Van, A.3
Bennetzen, J.L.4
Capy, P.5
Chalhoub, B.6
Flavell, A.7
Leroy, P.8
Morgante, M.9
Panaud, O.10
Paux, E.11
SanMiguel, P.12
Schulman, A.H.13
-
75
-
-
69249142634
-
A whole-genome snapshot of 454 sequences exposes the composition of the barley genome and provides evidence for parallel evolution of genome size in wheat and barley
-
10.1111/j.1365-313X.2009.03911.x
-
T Wicker S Taudien A Houben, et al. 2008 A whole-genome snapshot of 454 sequences exposes the composition of the barley genome and provides evidence for parallel evolution of genome size in wheat and barley Plant J 59 712 722 10.1111/j.1365-313X.2009.03911.x
-
(2008)
Plant J
, vol.59
, pp. 712-722
-
-
Wicker, T.1
Taudien, S.2
Houben, A.3
-
76
-
-
77956284088
-
Patching gaps in plant genomes results in gene movement and erosion of colinearity
-
10.1101/gr.107284.110 1:CAS:528:DC%2BC3cXhtFeru7vP 20530251
-
T Wicker JP Buchmann B Keller 2010 Patching gaps in plant genomes results in gene movement and erosion of colinearity Genome Res 20 1229 1237 10.1101/gr.107284.110 1:CAS:528:DC%2BC3cXhtFeru7vP 20530251
-
(2010)
Genome Res
, vol.20
, pp. 1229-1237
-
-
Wicker, T.1
Buchmann, J.P.2
Keller, B.3
-
77
-
-
70349323106
-
Transposable elements and an epigenetic basis for punctuated equilibria
-
10.1002/bies.200900026 1:CAS:528:DC%2BD1MXpsFGqt70%3D 19472370
-
DW Zeh JA Zeh Y Ishida 2009 Transposable elements and an epigenetic basis for punctuated equilibria Bioessays 31 715 726 10.1002/bies.200900026 1:CAS:528:DC%2BD1MXpsFGqt70%3D 19472370
-
(2009)
Bioessays
, vol.31
, pp. 715-726
-
-
Zeh, D.W.1
Zeh, J.A.2
Ishida, Y.3
-
78
-
-
42549085238
-
The epigenetic landscape of plants
-
DOI 10.1126/science.1153996
-
X Zhang 2008 The epigenetic landscape of plants Science 320 489 492 10.1126/science.1153996 1:CAS:528:DC%2BD1cXkvFGktrw%3D 18436779 (Pubitemid 351590632)
-
(2008)
Science
, vol.320
, Issue.5875
, pp. 489-492
-
-
Zhang, X.1
|