Isolation and characterization of Streptomyces, Actinoplanes, and Methylibium strains that are involved in degradation of natural rubber and synthetic poly(cis-1,4-isoprene)

Enzyme and Microbial Technology

Volumn 49, Issue 6-7, 2011, Pages 526-531

  Imai, Shunsuke ^a   Ichikawa, Kazuya ^a   Muramatsu, Yuki ^b   Kasai, Daisuke ^a   Masai, Eiji ^a   Fukuda, Masao ^a  

^a NAGAOKA UNIVERSITY OF TECHNOLOGY   (Japan)

^b NATIONAL INSTITUTE OF TECHNOLOGY AND EVALUATION   (Japan)

Author keywords

Actinoplanes; Methylibium; Natural rubber; Poly(cis 1,4 isoprene); Rubber degradation; Streptomyces

Indexed keywords

ACTINOPLANES; ACTINOPLANES SP; AGAR PLATES; AMINO ACID SEQUENCE; DEGRADATION INTERMEDIATES; DEGRADATION PRODUCTS; ISOLATION AND CHARACTERIZATION; LOW MOLECULAR WEIGHT; METHYLIBIUM; POLY(CIS-1 ,4-ISOPRENE); PROTEOBACTERIA; SOUTHERN HYBRIDIZATION; STREPTOMYCES; STREPTOMYCES SP;

ALDEHYDES; AMINO ACIDS; BACTERIA; CLONING; DEGRADATION; GEL PERMEATION CHROMATOGRAPHY; GENES; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; REACTION INTERMEDIATES; RUBBER; STRAIN;

SYNTHETIC RUBBER;

ALDEHYDE DERIVATIVE; ARGININE; ISOPRENE; LATEX CLEARING PROTEIN; POLY(1,4 ISOPRENE); PROTEIN; RUBBER; UNCLASSIFIED DRUG;

ACTINOPLANES; AMINO ACID SEQUENCE; ARTICLE; BACTERIUM ISOLATION; CLONE; DEGRADATION; GEL PERMEATION CHROMATOGRAPHY; GRAM NEGATIVE BACTERIUM; METHYLIBIUM; NONHUMAN; NUCLEOTIDE SEQUENCE; OXIDATION; PROTEIN MOTIF; PROTON NUCLEAR MAGNETIC RESONANCE; SOUTHERN BLOTTING; STREPTOMYCES;

ALDEHYDES; BASE SEQUENCE; BETAPROTEOBACTERIA; BIODEGRADATION, ENVIRONMENTAL; DNA, BACTERIAL; GENES, BACTERIAL; HEMITERPENES; LATEX; MICROMONOSPORACEAE; PHYLOGENY; RUBBER; STREPTOMYCES;

ACTINOPLANES; ACTINOPLANES SP.; BACTERIA (MICROORGANISMS); GAMMAPROTEOBACTERIA; METHYLIBIUM; NEGIBACTERIA; STREPTOMYCES; STREPTOMYCES SP.;

EID: 82955203169     PISSN: 01410229     EISSN: 18790909     Source Type: Journal    
DOI: 10.1016/j.enzmictec.2011.05.014     Document Type: Article

References (28)

1. Linos A., Berekaa M.M., Reichelt R., Keller U., Schmitt J., Flemming H.C., et al. Biodegradation of poly(cis-1,4-polyisoprene) rubbers by distinct actinomycetes: microbial strategies and detailed surface analysis. Appl Environ Microbiol 2000, 66:1639-1645.
2. Linos A., Reichelt R., Keller U., Steinbüchel A. A Gram-negative bacterium, identified as Pseudomonas aeruginosa AL98, is a potent degrader of natural rubber and synthetic cis-1, 4-polyisoprene. FEMS Microbiol Lett 2000, 182:155-161.
3. Jendrossek D., Tomasi G., Kroppenstedt R.M. Bacterial degradation of natural rubber: a privilege of actinomycetes?. FEMS Microbiol Lett 1997, 150:179-188.
4. Rose K., Steinbüchel A. Construction and intergeneric conjugative transfer of a pSG5-based cosmid vector from Escherichia coli to the polyisoprene rubber degrading strain Micromonospora aurantiaca W2b. FEMS Microbiol Lett 2002, 211:129-132.
5. Arenskötter M., Bröker D., Steinbüchel A. Biology of the metabolically diverse genus Gordonia. Appl Environ Microbiol 2004, 70:3195-3204.
6. Jendrossek D., Reinhardt S. Sequence analysis of a gene product synthesized by Xanthomonas sp. during growth on natural rubber latex. FEMS Microbiol Lett 2003, 224:61-65.
7. Rose K., Tenberge K.B., Steinbüchel A. Identification and characterization of genes from Streptomyces sp. strain K30 responsible for clear zone formation on natural rubber latex and poly(cis-1,4-isoprene) rubber degradation. Biomacromolecules 2005, 6:180-188.
8. Yikmis M., Arenskötter M., Rose K., Lange N., Wernsmann H., Wiefel L., et al. Secretion and transcriptional regulation of the latex-clearing protein, Lcp, by the rubber-degrading bacterium Streptomyces sp. strain K30. Appl Environ Microbiol 2008, 74:5373-5382.
9. Bröker D., Dietz D., Arenskötter M., Steinbüchel A. The genomes of the non-clearing-zone-forming and natural-rubber-degrading species Gordonia polyisoprenivorans and Gordonia westfalica harbor genes expressing Lcp activity in Streptomyces strains. Appl Environ Microbiol 2008, 74:2288-2297.
10. Ibrahim E.M., Arenskötter M., Luftmann H., Steinbüchel A. Identification of poly(cis-1,4-isoprene) degradation intermediates during growth of moderately thermophilic actinomycetes on rubber and cloning of a functional lcp homologue from Nocardia farcinica strain E1. Appl Environ Microbiol 2006, 72:3375-3382.
11. Braaz R., Armbruster W., Jendrossek D. Heme-dependent rubber oxygenase RoxA of Xanthomonas sp. cleaves the carbon backbone of poly(cis-1,4-isoprene) by a dioxygenase mechanism. Appl Environ Microbiol 2005, 71:2473-2478.
12. Braaz R., Fischer P., Jendrossek D. Novel type of heme-dependent oxygenase catalyzes oxidative cleavage of rubber (poly-cis-1,4-isoprene). Appl Environ Microbiol 2004, 70:7388-7395.
13. Tsuchii A., Takeda K. Rubber-degrading enzyme from a bacterial culture. Appl Environ Microbiol 1990, 56:269-274.
14. Kieser T., Bipp M.J., Buttner M.J., Chater K.F., Hopwood D.A. Practical streptomyces genetics 2000, John Innes Foundation, Norwich, U.K.
15. Peng X., Egashira T., Hanashiro K., Masai E., Nishikawa S., Katayama Y., et al. Cloning of a Sphingomonas paucimobilis SYK-6 gene encoding a novel oxygenase that cleaves lignin-related biphenyl and characterization of the enzyme. Appl Environ Microbiol 1998, 64:2520-2527.
16. Seto M., Kimbara K., Shimura M., Hatta T., Fukuda M., Yano K. A novel transformation of polychlorinated biphenyls by Rhodococcus sp. strain RHA1. Appl Environ Microbiol 1995, 61:3353-3358.
17. Yanisch-Perron C., Vieira J., Messing J. Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors. Gene 1985, 33:103-119.
18. Hanahan D. Studies on transformation of Escherichia coli with plasmids. J Mol Biol 1983, 166:557-580.
19. Saito I., Stark G.R. Charomids: cosmid vectors for efficient cloning and mapping of large or small restriction fragments. Proc Natl Acad Sci USA 1986, 83:8664-8668.
20. Kasai D., Masai E., Miyauchi K., Katayama Y., Fukuda M. Characterization of the gallate dioxygenase gene: three distinct ring cleavage dioxygenases are involved in syringate degradation by Sphingomonas paucimobilis SYK-6. J Bacteriol 2005, 187:5067-5074.
21. Masai E., Sugiyama K., Iwashita N., Shimizu S., Hauschild J.E., Hatta T., et al. The bphDEF meta-cleavage pathway genes involved in biphenyl/polychlorinated biphenyl degradation are located on a linear plasmid and separated from the initial bphACB genes in Rhodococcus sp. strain RHA1. Gene 1997, 187:141-149.
22. Masai E., Yamada A., Healy J.M., Hatta T., Kimbara K., Fukuda M., et al. Characterization of biphenyl catabolic genes of Gram-positive polychlorinated biphenyl degrader Rhodococcus sp. strain RHA1. Appl Environ Microbiol 1995, 61:2079-2085.
23. Sasoh M., Masai E., Ishibashi S., Hara H., Kamimura N., Miyauchi K., et al. Characterization of the terephthalate degradation genes of Comamonas sp. strain E6. Appl Environ Microbiol 2006, 72:1825-1832.
24. Abe T., Masai E., Miyauchi K., Katayama Y., Fukuda M. A tetrahydrofolate-dependent O-demethylase, LigM, is crucial for catabolism of vanillate and syringate in Sphingomonas paucimobilis SYK-6. J Bacteriol 2005, 187:2030-2037.
25. Kasai D., Masai E., Miyauchi K., Katayama Y., Fukuda M. Characterization of the 3-O-methylgallate dioxygenase gene and evidence of multiple 3-O-methylgallate catabolic pathways in Sphingomonas paucimobilis SYK-6. J Bacteriol 2004, 186:4951-4959.
26. Cole J.R., Chai B., Farris R.J., Wang Q., Kulam S.A., McGarrell D.M., et al. The Ribosomal Database Project (RDP-II): sequences and tools for high-throughput rRNA analysis. Nucleic Acids Res 2005, 33:D294-D296.
27. Bendtsen J.D., Nielsen H., Widdick D., Palmer T., Brunak S. Prediction of twin-arginine signal peptides. BMC Bioinformatics 2005, 6:167.
28. Stackebrandt E., Verbarg S., Frühling A., Busse H.J., Tindall B.J. Dissection of the genus Methylibium: reclassification of Methylibium fulvum as Rhizobacter fulvus comb. nov., Methylibium aquaticum as Piscinibacter aquaticus gen. nov., comb. nov. and Methylibium subsaxonicum as Rivibacter subsaxonicus gen. nov., comb. nov. and emended descriptions of the genera Rhizobacter and Methylibium. Int J Syst Evol Microbiol 2009, 59:2552-2560.