Identification of poly(cis-1,4-isoprene) degradation intermediates during growth of moderately thermophilic actinomycetes on rubber and cloning of a functional lcp homologue from Nocardia farcinica strain E1

Applied and Environmental Microbiology

Volumn 72, Issue 5, 2006, Pages 3375-3382

  Ibrahim, Ebaid M A ^a   Arenskötter, Matthias ^a   Luftmann, Heinrich ^a   Steinbüchel, Alexander ^a  

^a UNIVERSITY OF MÜNSTER   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

DEGRADATION; GEL PERMEATION CHROMATOGRAPHY; GENES; INFRARED SPECTROSCOPY; IONIZATION; MASS SPECTROMETRY; ORGANIC POLYMERS; RUBBER; STRAIN;

GENE SEQUENCE ANALYSIS; MESOPHILIC BACTERIA; STREPTOMYCES; TAXONOMIC CHARACTERIZATION;

BACTERIA;

BACTERIAL PROTEIN; ISOPRENOID; LATEX CLEARING PROTEIN; POLY(1,4 ISOPRENE); POLYMER; RIBOSOME RNA; RUBBER; UNCLASSIFIED DRUG;

ALDEHYDE; BACTERIUM; CLEAVAGE; DEGRADATION; GENE; POLYMER; PROTEIN; RNA; STRAIN;

ACTINOBACTERIA; ACTINOMADURA; ACTINOMADURA NITRITIGENES; ARTICLE; BACTERIUM ISOLATION; BIODEGRADATION; DEGRADATION KINETICS; GEL PERMEATION CHROMATOGRAPHY; GENE; GENE EXPRESSION REGULATION; GENE ISOLATION; GENE SEQUENCE; GORDONIA; GROWTH RATE; LCP GENE; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; MINERALIZATION; MOLECULAR CLONING; MYCELIUM; NOCARDIA; NOCARDIA FARCINICA E1; NONHUMAN; NUCLEOTIDE SEQUENCE; SEQUENCE ANALYSIS; STRAIN DIFFERENCE; STRAIN IDENTIFICATION; STREPTOMYCES LIVIDANS; TAXONOMIC IDENTIFICATION; THERMOMONOSPORA CURVATA;

ACTINOMYCETALES; BACTERIAL PROTEINS; BIODEGRADATION, ENVIRONMENTAL; CLONING, MOLECULAR; DNA, BACTERIAL; HEAT; HEMITERPENES; LATEX; MOLECULAR SEQUENCE DATA; NOCARDIA; RNA, RIBOSOMAL, 16S; RUBBER; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION;

ACTINOBACTERIA (CLASS); ACTINOMADURA NITRITIGENES; GORDONIA (ACTINOMYCETE); MYCELIUM (GENUS); NOCARDIA FARCINICA; STREPTOMYCES LIVIDANS; STREPTOMYCES SP.; THERMOMONOSPORA CURVATA;

EID: 33646563706     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/AEM.72.5.3375-3382.2006     Document Type: Article

References (22)

1. Arenskötter, M., D. Baumeister, M. M. Berekaa, G. Pötter, R. M. Kroppenstedt, A. Linos, and A. Steinbüchel. 2001. Taxonomic characterization of two rubber degrading bacteria belonging to the species Gordonia polyisoprenivorans and analysis of hyper variable regions of 16S rDNA sequences. FEMS Microbiol. Lett. 205:277-282.
2. Arenskötter, M., D. Broker, and A. Steinbüchel. 2004. Biology of the metabolically diverse genus Gordonia. Appl. Environ. Microbiol. 70:3195-3204.
3. Ausubel, F. M., R. Brent, R. E. Kingston, D. D. Moore, J. G. Seidman, J. A. Smith, and K. Struni. 1987. Current protocols in molecular biology, vol. 1. John Wiley & Sons, New York, N.Y.
4. Birnboim, H. C., and J. Doly. 1979. A rapid alkaline extraction procedure for screening recombinant plasmid DNA. Nucleic Acids Res. 7:1513-1523.
5. Bode, H. B., A. Zeeck, K. Plückhahn, and D. Jendrossek. 2000. Physiological and chemical investigations into microbial degradation of synthetic poly(cis-1,4-isoprene). Appl. Environ. Microbiol. 66:3680-3685.
6. Bode, H. B., K. Kerkhoff, and D. Jendrossek. 2001. Bacterial degradation of natural and synthetic rubber. Biomacromolecules 2:295-303.
7. Braaz, R., P. Fischer, and D. Jendrossek. 2004. Novel type of heme-dependent oxygenase catalyzes oxidative cleavage of rubber (poly-cis-1,4-isoprene). Appl. Environ. Microbiol. 70:7388-7395.
8. Gallert, C. 2000. Degradation of latex and of natural rubber by Streptomyces strain La 7. Syst. Appl. Microbiol. 23:433-441.
9. Kieser, T., M. J. Bipp, M. J. Buttner, K. F. Chater, and D. A. Hopwood. 2000. Practical streptomyces genetics. John Innes Foundation, Norwich, United Kingdom.
10. Linos, A., and A. Steinbüchel. 1998. Microbial degradation of natural and synthetic rubber by novel bacteria belonging to the genus Gordonia. Kautsch. Gummi Kunstst. 51:496-499.
11. Linos, Á., M. M. Berekaa, A. Steinbüchel., K. K. Kim, C. Spröer, and R. M. Kroppenstedt. 2002. Gordonia westfalica sp. nov., a novel rubber-degrading actinomycete. Int. J. Syst. Evol. Microbiol. 52:1133-1139.
12. Linos, A., M. M. Berekaa, R. Reichelt, U. Keller, J. Schmitt, H. C. Flemming, R. M. Kroppenstedt, and A. Steinbüchel. 2000. Biodegradation of poly(cis-1,4-isoprene) rubbers by distinct actinomycetes: microbial strategies and detailed surface analysis. Appl. Environ. Microbiol. 66:1639-1645.
13. Rainey, F. A., N. Ward-Rainey, R. M. Kroppenstedt, and E. Stackebrandt. 1996. The genus Nocardiopsis represents a phylogenetically coherent taxon and a distinct actinomycete lineage: proposal of Nocardiopsaceae fam. nov. Int. J. Syst. Bacteriol. 46:1088-1092.
14. Rose, K., and A. Steinbüchel. 2005. Biodegradation of natural rubber and related compounds: recent insights into a hardly understood catabolic capability of microorganisms. Appl. Environ. Microbiol. 71:2803-2812.
15. Rose, K., K. B. Tenberge, and A. Steinbüchel. 2005. Identification and characterization of genes from Streptomyces sp. strain K30 responsible for clear zone formation on natural rubber latex and poly(cis-1,4-isoprene) rubber degradation. Biomacromolecules 6:180-188.
16. Sambrook, J., E. F. Fritsch, and T. Maniatis. 1989. Molecular cloning: a laboratory manual, 2nd ed. Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y.
17. Schlegel, H. G., H. Kaltwasser, and G. Gottschalk. 1961. Ein Submersverfahren zur Kultur wasserstoffoxidierender Bakterien: Wachstumsphysiologische Untersuchungen. Arch. Mikrobiol. 38:209-222.
18. Söhngen, N. L., and J. G. Fol. 1914. Die Zersetzung des Kautschuks durch Mikroorganismen. Zentbl. Bakteriol. Abt. II 40:87-98.
19. Stackebrandt, E., F. A. Rainey, and N. L. Ward-Rainey. 1997. Proposal for a new hierarchic classification system, Actinobacteria classis nov. Int. J. Syst. Bacteriol. 47:479-491.
20. Taylor, I. N., R. C. Brown, M. Bycroft, G. King, J. A. Littlechild, M. C. Lloyd, C. Praquin, H. S. Toogood, and S. J. C. Taylor. 2004. Application of thermophilic enzymes in commercial biotransformation processes. Biochem. Soc. Trans. 32:290-292.
21. Tsuchii, A., T. Suzuki, and K. Takeda. 1985. Microbial degradation of natural rubber vulcanizates. Appl. Environ. Microbiol. 50:965-970.
22. Zhang, Z., Y. Wang, and J. Ruan. 1998. Reclassification of Thermomonospora and Microtetraspora. Int. J. Syst. Bacteriol. 48:411-422.