Functional centromeres in Astragalus sinicus include a compact centromere-specific histone H3 and a 20-bp tandem repeat

Chromosome Research

Volumn 19, Issue 8, 2011, Pages 969-978

  Tek, Ahmet L ^a   Kashihara, Kazunari ^a   Murata, Minoru ^a   Nagaki, Kiyotaka ^a  

^a OKAYAMA UNIVERSITY   (Japan)

Author keywords

centromere; Chinese milk vetch; chromatin immunoprecipitation; Fabaceae; Leguminosae; tandem repeat

Indexed keywords

HISTONE H3; MONOMER; NUCLEOTIDE DERIVATIVE;

ANGIOSPERM; ARTICLE; ASTRAGALUS SINICUS; AT RICH SEQUENCE; CELL DIVISION; CENTROMERE; CHROMOSOME SEGREGATION; CONTROLLED STUDY; DNA SEQUENCE; EUKARYOTE; GENETIC CONSERVATION; LEGUME; MOLECULAR SIZE; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN LOCALIZATION; TANDEM REPEAT;

AMINO ACID SEQUENCE; BASE SEQUENCE; CENTROMERE; CHROMATIN IMMUNOPRECIPITATION; CLONING, MOLECULAR; DNA, PLANT; FABACEAE; HISTONES; MOLECULAR SEQUENCE DATA; PLANT PROTEINS; RETROELEMENTS; SEQUENCE ANALYSIS, DNA; TANDEM REPEAT SEQUENCES;

ASTRAGALUS (ANGIOSPERM); ASTRAGALUS SINICUS; EUKARYOTA; FABACEAE; MAGNOLIOPHYTA; VICIA;

EID: 82955194766     PISSN: 09673849     EISSN: 15736849     Source Type: Journal    
DOI: 10.1007/s10577-011-9247-y     Document Type: Article

References (36)

1. MX Chou XY Wei DS Chen JC Zhou 2006 Thirteen nodule-specific or nodule-enhanced genes encoding products homologous to cysteine cluster proteins or plant lipid transfer proteins are identified in Astragalus sinicus L. by suppressive subtractive hybridization J Exp Bot 57 2673 2685 16831842 10.1093/jxb/erl030 1:CAS:528:DC%2BD28Xotl2mtLw%3D (Pubitemid 44290299)
2. Q Cronk I Ojeda RT Pennington 2006 Legume comparative genomics: progress in phylogenetics and phylogenomics Curr Opin Plant Biol 9 99 103 16480916 10.1016/j.pbi.2006.01.011 1:CAS:528:DC%2BD28XhvVWrurs%3D (Pubitemid 43289303)
3. RK Dawe S Henikoff 2006 Centromeres put epigenetics in the driver's seat Trends Biochem Sci 31 662 669 17074489 10.1016/j.tibs.2006.10.004 1:CAS:528:DC%2BD28Xht1ClsrfL (Pubitemid 44791947)
4. WL Gerlach JR Bedbrook 1979 Cloning and characterization of ribosomal RNA genes from wheat and barley Nucleic Acids Res 7 1869 1885 537913 10.1093/nar/7.7.1869 1:CAS:528:DyaL3cXlsFamsQ%3D%3D (Pubitemid 10175139)
5. AE Hall KC Keith SE Hall GP Copenhaver D Preuss 2004 The rapidly evolving field of plant centromeres Curr Opin Plant Biol 7 108 114 15003208 10.1016/j.pbi.2004.01.008 1:CAS:528:DC%2BD2cXhslCiu7o%3D (Pubitemid 38308043)
6. F Han JC Lamb JA Birchler 2006 High frequency of centromere inactivation resulting in stable dicentric chromosomes of maize Proc Natl Acad Sci U S A 103 3238 3243 16492777 10.1073/pnas.0509650103 1:CAS:528:DC%2BD28XksF2kt7Y%3D (Pubitemid 43346454)
7. S Henikoff K Ahmad HS Malik 2001 The centromere paradox: stable inheritance with rapidly evolving DNA Science 293 1098 1102 11498581 10.1126/science.1062939 1:CAS:528:DC%2BD3MXmtVWku7o%3D (Pubitemid 32758083)
8. A Houben E Schroeder-Reiter K Nagaki, et al. 2007 CENH3 interacts with the centromeric retrotransposon cereba and GC-rich satellites and locates to centromeric substructures in barley Chromosoma 116 275 283 17483978 10.1007/s00412-007-0102-z 1:CAS:528:DC%2BD2sXntl2mu7s%3D (Pubitemid 46712016)
9. J Jiang BS Gill GL Wang PC Ronald DC Ward 1995 Metaphase and interphase fluorescence in situ hybridization mapping of the rice genome with bacterial artificial chromosomes Proc Natl Acad Sci U S A 92 4487 4491 7753830 10.1073/pnas.92.10.4487 1:CAS:528:DyaK2MXls1aksL8%3D
10. J Jiang JA Birchler WA Parrott RK Dawe 2003 A molecular view of plant centromeres Trends Plant Sci 8 570 575 14659705 10.1016/j.tplants.2003.10.011 1:CAS:528:DC%2BD3sXpsVSltbg%3D (Pubitemid 38038930)
11. L Kanizay RK Dawe 2009 Centromeres: long intergenic spaces with adaptive features Funct Integr Genomics 9 287 292 19434433 10.1007/s10142-009-0124-0 1:CAS:528:DC%2BD1MXns1Chu78%3D
12. O Kulikova R Geurts M Lamine, et al. 2004 Satellite repeats in the functional centromere and pericentromeric heterochromatin of Medicago truncatula Chromosoma 113 276 283 15480726 10.1007/s00412-004-0315-3 1:CAS:528: DC%2BD2cXhtVanurbI (Pubitemid 39610378)
13. HR Lee W Zhang T Langdon, et al. 2005 Chromatin immunoprecipitation cloning reveals rapid evolutionary patterns of centromeric DNA in Oryza species Proc Natl Acad Sci U S A 102 11793 11798 16040802 10.1073/pnas.0503863102 1:CAS:528:DC%2BD2MXpsFGgtLY%3D (Pubitemid 41170804)
14. Z Liu W Yue D Li, et al. 2008 Structure and dynamics of retrotransposons at wheat centromeres and pericentromeres Chromosoma 117 445 456 18496705 10.1007/s00412-008-0161-9 1:CAS:528:DC%2BD1cXhtV2jsbrL
15. HS Malik S Henikoff 2003 Phylogenomics of the nucleosome Nat Struct Biol 10 882 891 14583738 10.1038/nsb996 1:CAS:528:DC%2BD3sXosVCjtbs%3D (Pubitemid 37386096)
16. P Meraldi AD McAinsh E Rheinbay PK Sorger 2006 Phylogenetic and structural analysis of centromeric DNA and kinetochore proteins Genome Biol 7 R23 16563186 10.1186/gb-2006-7-3-r23 (Pubitemid 43879100)
17. K Nagaki M Murata 2005 Characterization of CENH3 and centromere- associated DNA sequences in sugarcane Chromosome Res 13 195 203 15861308 10.1007/s10577-005-0847-2 1:CAS:528:DC%2BD2MXjslOls7g%3D (Pubitemid 40645904)
18. K Nagaki PB Talbert CX Zhong RK Dawe S Henikoff J Jiang 2003 Chromatin immunoprecipitation reveals that the 180-bp satellite repeat is the key functional DNA element of Arabidopsis thaliana centromeres Genetics 163 1221 1225 12663558 1:CAS:528:DC%2BD3sXjtlOgsLs%3D (Pubitemid 36417961)
19. K Nagaki Z Cheng S Ouyang, et al. 2004 Sequencing of a rice centromere uncovers active genes Nat Genet 36 138 145 14716315 10.1038/ng1289 1:CAS:528:DC%2BD2cXntlCgsA%3D%3D (Pubitemid 38174371)
20. K Nagaki K Kashihara M Murata 2009 A centromeric DNA sequence colocalized with a centromere-specific histone H3 in tobacco Chromosoma 118 249 257 19048266 10.1007/s00412-008-0193-1 1:CAS:528:DC%2BD1MXivVGjs78%3D
21. K Nagaki K Terada M Wakimoto K Kashihara M Murata 2010 Centromere targeting of alien CENH3s in Arabidopsis and tobacco cells Chromosome Res 18 203 211 20084454 10.1007/s10577-009-9108-0 1:CAS:528:DC%2BC3cXjslGksLk%3D
22. Y Naito M Fujie S Usami Y Murooka T Yamada 2000 The involvement of a cysteine proteinase in the nodule development in Chinese milk vetch infected with Mesorhizobium huakuii subsp. rengei Plant Physiol 124 1087 1096 11080286 10.1104/pp.124.3.1087 1:CAS:528:DC%2BD3cXotlWru7g%3D
23. S Nasuda S Hudakova I Schubert A Houben T Endo 2005 Stable barley chromosomes without centromeric repeats Proc Natl Acad Sci U S A 102 9842 9847 15998740 10.1073/pnas.0504235102 1:CAS:528:DC%2BD2MXmsFarurs%3D (Pubitemid 40993655)
24. Y Ogura F Shibata H Sato M Murata 2004 Characterization of a CENP-C homolog in Arabidopsis thaliana Genes Genet Syst 79 139 144 15329494 10.1266/ggs.79.139 1:CAS:528:DC%2BD2cXpsFWhsr4%3D (Pubitemid 39243764)
25. SK Osaloo AA Maassoumi N Murakami 2003 Molecular systematics of the genus Astragalus L. (Fabaceae): phylogenetic analyses of nuclear ribosomal DNA internal transcribed spacers and chloroplast gene ndhF sequences Plant Syst Evol 242 1 32 10.1007/s00606-003-0014-1 1:CAS:528:DC%2BD3sXpsVKqs7w%3D (Pubitemid 38086233)
26. A Pedrosa N Sandal J Stougaard D Schweizer A Bachmair 2002 Chromosomal map of the model legume Lotus japonicus Genetics 161 1661 1672 12196409 1:CAS:528:DC%2BD38XnsVClu7k%3D (Pubitemid 35014766)
27. M Ravi PN Kwong RM Menorca, et al. 2010 The rapidly evolving centromere-specific histone has stringent functional requirements in Arabidopsis thaliana Genetics 186 461 471 20628040 10.1534/genetics.110.120337 1:CAS:528:DC%2BC3cXhsFOnt7rJ
28. F Shibata M Murata 2004 Differential localization of the centromere-specific proteins in the major centromeric satellite of Arabidopsis thaliana J Cell Sci 117 2963 2970 15161939 10.1242/jcs.01144 1:CAS:528:DC%2BD2cXmtlCrtbk%3D (Pubitemid 39117671)
29. AL Tek K Kashihara M Murata K Nagaki 2010 Functional centromeres in soybean include two distinct tandem repeats and a retrotransposon Chromosome Res 18 337 347 20204495 10.1007/s10577-010-9119-x 1:CAS:528:DC%2BC3cXkslSgt70%3D
30. JD Thompson TJ Gibson F Plewniak F Jeanmougin DG Higgins 1997 The CLUSTAL X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools Nucleic Acids Res 25 4876 4882 9396791 10.1093/nar/25.24.4876 1:CAS:528:DyaK1cXntFyntQ%3D%3D (Pubitemid 28022245)
31. D Ugarkovic 2005 Functional elements residing within satellite DNAs EMBO Rep 6 1035 1039 16264428 10.1038/sj.embor.7400558 1:CAS:528:DC%2BD2MXhtFKlsLvF (Pubitemid 41637647)
32. PE Warburton CA Cooke S Bourassa, et al. 1997 Immunolocalization of CENP-A suggests a distinct nucleosome structure at the inner kinetochore plate of active centromeres Curr Biol 7 901 904 9382805 10.1016/S0960-9822(06)00382-4 1:CAS:528:DyaK2sXnslaju70%3D (Pubitemid 27493133)
33. MF Wojciechowski 2005 Astragalus (Fabaceae): a molecular phylogenetic perspective Brittonia 57 382 396 10.1663/0007-196X(2005)057[0382:AFAMPP]2.0.CO;2 (Pubitemid 43130875)
34. Yasue 1986 Use of Chinese milk vetch as a honeybee plant Honeybee Sci 7 57 60
35. W Zhang C Yi W Bao, et al. 2005 The transcribed 165-bp CentO satellite is the major functional centromeric element in the wild rice species Oryza punctata Plant Physiol 139 306 315 16113220 10.1104/pp.105.064147 1:CAS:528:DC%2BD2MXhtVCgur3N (Pubitemid 43951614)
36. CX Zhong JB Marshall C Topp, et al. 2002 Centromeric retroelements and satellites interact with maize kinetochore protein CENH3 Plant Cell 14 2825 2836 12417704 10.1105/tpc.006106 1:CAS:528:DC%2BD38XovF2qurg%3D (Pubitemid 35326307)