Bacterial expression, purification and characterization of a rice voltage-dependent, anion-selective channel isoform, OsVDAC4

Journal of Membrane Biology

Volumn 244, Issue 2, 2011, Pages 67-80

  Godbole, Ashwini ^a,b   Mitra, Rohan ^a,c   Dubey, Ashvini K ^a   Reddy, Palakolanu S ^a,d   Mathew, M K ^a  

^a TATA INSTITUTE OF FUNDAMENTAL RESEARCH   (India)

^b Institute of Ayurveda and Integrative Medicine   (India)

^c NATIONAL INSTITUTE OF MENTAL HEALTH AND NEUROSCIENCES   (India)

^d UNIVERSITY OF HYDERABAD   (India)

Author keywords

barrel; Anion selective; ATP; Liposome swelling; Mitochondria; OsVDAC4; Planar bilayer membrane

Indexed keywords

ADENOSINE TRIPHOSPHATE; BACTERIAL PROTEIN; CYSTEINE; LIPOSOME; MACROGOL; POTASSIUM CHLORIDE; RICE VOLTAGE DEPENDENT ANION SELECTIVE CHANNEL 4; TRYPTOPHAN; UNCLASSIFIED DRUG; VOLTAGE DEPENDENT ANION CHANNEL; VOLTAGE DEPENDENT ANION CHANNEL 1;

ALPHA HELIX; AMINO TERMINAL SEQUENCE; ARTICLE; ARTIFICIAL MEMBRANE; BETA STRUCTURE; BILAYER MEMBRANE; CELL INCLUSION; CHLOROPLAST; CONDUCTANCE; CONTROLLED STUDY; GENE DELETION; GENE INSERTION; GENETIC COMPLEMENTATION; MEMBRANE TRANSPORT; MITOCHONDRIAL MEMBRANE; NONHUMAN; PEA; POROSITY; PROTEIN ANALYSIS; PROTEIN EXPRESSION; PROTEIN INTERACTION; PROTEIN PURIFICATION; PROTEIN SECONDARY STRUCTURE; PROTEIN STRUCTURE; SEQUENCE ANALYSIS; YEAST;

ADENOSINE TRIPHOSPHATE; AMINO ACID SEQUENCE; ANIONS; BIOLOGICAL TRANSPORT; CLONING, MOLECULAR; DETERGENTS; ESCHERICHIA COLI; LIPID BILAYERS; LIPOSOMES; MITOCHONDRIA; MITOCHONDRIAL MEMBRANES; MOLECULAR SEQUENCE DATA; ORYZA SATIVA; PLANT PROTEINS; POLYETHYLENE GLYCOLS; PROTEIN ISOFORMS; PROTEIN STRUCTURE, SECONDARY; RECOMBINANT PROTEINS; SACCHAROMYCES CEREVISIAE; SEQUENCE HOMOLOGY, AMINO ACID; VOLTAGE-DEPENDENT ANION CHANNEL 1; VOLTAGE-DEPENDENT ANION CHANNELS;

BACTERIA (MICROORGANISMS);

EID: 82955187312     PISSN: 00222631     EISSN: 14321424     Source Type: Journal    
DOI: 10.1007/s00232-011-9399-x     Document Type: Article

References (48)

1. F Al Bitar N Roosens M Smeyers M Vauterin J Van Boxtel M Jacobs F Homble 2003 Sequence analysis, transcriptional and posttranscriptional regulation of the rice VDAC family Biochim Biophys Acta 1625 43 51 12527425 1:CAS:528:DC%2BD3sXjtF2ktA%3D%3D (Pubitemid 36084502)
2. M Bayrhuber T Meins M Habeck S Becker K Giller S Villinger C Vonrhein C Griesinger M Zweckstetter K Zeth 2008 Structure of the human voltage-dependent anion channel Proc Natl Acad Sci USA 105 15370 15375 18832158 10.1073/pnas.0808115105 1:CAS:528:DC%2BD1cXht1Gnt7%2FM
3. E Blachly-Dyson EB Zambronicz WH Yu V Adams ER McCabe J Adelman M Colombini M Forte 1993 Cloning and functional expression in yeast of two human isoforms of the outer mitochondrial membrane channel, the voltage-dependent anion channel J Biol Chem 268 1835 1841 8420959 1:CAS:528:DyaK3sXit1ymsLs%3D (Pubitemid 23033582)
4. AM Cesura E Pinard R Schubenel V Goetschy A Friedlein H Langen P Polcic MA Forte P Bernardi JA Kemp 2003 The voltage-dependent anion channel is the target for a new class of inhibitors of the mitochondrial permeability transition pore J Biol Chem 278 49812 49818 12952973 10.1074/jbc.M304748200 1:CAS:528:DC%2BD3sXpslSrurk%3D (Pubitemid 37548815)
5. M Colombini 1980 Structure and mode of action of a voltage dependent anion-selective channel (VDAC) located in the outer mitochondrial membrane Ann NY Acad Sci 341 552 563 6249159 10.1111/j.1749-6632.1980.tb47198.x 1:CAS:528:DyaL3cXkvFSltrs%3D
6. M Colombini 1987 Characterization of channels isolated from plant mitochondria Methods Enzymol 148 465 475 2447469 10.1016/0076-6879(87)48045-2 1:CAS:528:DyaL1cXhsVKksr0%3D
7. M Colombini 2004 VDAC: the channel at the interface between mitochondria and the cytosol Mol Cell Biochem 256-257 107 115 14977174 10.1023/B:MCBI. 0000009862.17396.8d (Pubitemid 38181239)
8. M Colombini 2009 The published 3D structure of the VDAC channel: native or not? Trends Biochem Sci 34 382 389 19647437 10.1016/j.tibs.2009.05.001 1:CAS:528:DC%2BD1MXhtVSntrjL
9. B Cooper JD Clarke P Budworth J Kreps D Hutchison S Park S Guimil M Dunn P Luginbühl C Ellero SA Goff J Glazebrook 2003 A network of rice genes associated with stress response and seed development Proc Natl Acad Sci 100 4945 4950 12684538 10.1073/pnas.0737574100 1:CAS:528:DC%2BD3sXjt12ntL4%3D (Pubitemid 36457833)
10. MK Desai RN Mishra D Verma S Nair SK Sopory MK Reddy 2006 Structural and functional analysis of a salt stress inducible gene encoding voltage dependent anion channel (VDAC) from pearl millet (Pennisetum glaucum) Plant Physiol Biochem 44 483 493 17023166 10.1016/j.plaphy.2006.08.008 1:CAS:528: DC%2BD28XhtVyitr%2FF (Pubitemid 44537817)
11. M Dolder K Zeth P Tittmann H Gross W Welte T Wallimann 1999 Crystallization of the human, mitochondrial voltage-dependent anion-selective channel in the presence of phospholipids J Struct Biol 127 64 71 10479618 10.1006/jsbi.1999.4141 1:CAS:528:DyaK1MXlslemtbk%3D (Pubitemid 29463377)
12. A Elkeles A Breiman M Zizi 1997 Functional differences among wheat voltage-dependent anion channel (VDAC) isoforms expressed in yeast. Indication for the presence of a novel VDAC-modulating protein? J Biol Chem 272 6252 6260 9045642 10.1074/jbc.272.10.6252 1:CAS:528:DyaK2sXhvVOgtLk%3D (Pubitemid 27118097)
13. TR Geiger CS Keith MG Muszynski KJ Newton 1999 Sequences of three maize cDNAs encoding mitochondrial voltage-dependent anion channel (VDAC) proteins Plant Physiol 121 686
14. D Gincel H Zaid V Shoshan-Barmatz 2001 Calcium binding and translocation by the voltage-dependent anion channel: a possible regulatory mechanism in mitochondrial function Biochem J 358 147 155 11485562 10.1042/0264-6021:3580147 1:CAS:528:DC%2BD3MXmsFShtbs%3D (Pubitemid 32778108)
15. A Godbole J Varghese A Sarin MK Mathew 2003 VDAC is a conserved element of death pathways in plant and animal systems Biochim Biophys Acta 1642 87 96 12972297 10.1016/S0167-4889(03)00102-2 1:CAS:528:DC%2BD3sXntVeqtrs%3D (Pubitemid 37338282)
16. XW Guo PR Smith B Cognon D D'Arcangelis E Dolginova CA Mannella 1995 Molecular design of the voltage-dependent, anion-selective channel in the mitochondrial outer membrane J Struct Biol 114 41 59 7772417 10.1006/jsbi.1995.1004 1:CAS:528:DyaK2MXlvFCqtbg%3D
17. L Heins H Mentzel A Schmid R Benz UK Schmitz 1994 Biochemical, molecular, and functional characterization of porin isoforms from potato mitochondria J Biol Chem 269 26402 26410 7929361 1:CAS:528:DyaK2cXmt1Cmtrs%3D (Pubitemid 24328462)
18. S Hiller G Wagner 2009 The role of solution NMR in the structure determinations of VDAC-1 and other membrane proteins Curr Opin Struct Biol 19 396 401 19665886 10.1016/j.sbi.2009.07.013 1:CAS:528:DC%2BD1MXhtVKktbvM
19. S Hiller RG Garces TJ Malia VY Orekhov M Colombini G Wagner 2008 Solution structure of the integral human membrane protein VDAC-1 in detergent micelles Science 321 1206 1210 18755977 10.1126/science.1161302 1:CAS:528: DC%2BD1cXhtVGgt7zI
20. N Keinan D Tyomkin V Shoshan-Barmatz 2010 Oligomerization of the mitochondrial protein voltage-dependent anion channel is coupled to the induction of apoptosis Mol Cell Biol 30 5698 5709 20937774 10.1128/MCB.00165-10 1:CAS:528:DC%2BC3MXpslWhsQ%3D%3D
21. DA Koppel KW Kinnally P Masters M Forte E Blachly-Dyson CA Mannella 1998 Bacterial expression and characterization of the mitochondrial outer membrane channel. Effects of N-terminal modifications J Biol Chem 273 13794 13800 9593723 10.1074/jbc.273.22.13794 1:CAS:528:DyaK1cXjvVejurg%3D (Pubitemid 28268429)
22. KM Kushalappa AK Mattoo U Vijayraghavan 2000 A spectrum of genes expressed during early stages of rice panicle and flower development J Genet 79 25 32 10.1007/BF02728942 1:CAS:528:DC%2BD3MXot1yrsA%3D%3D (Pubitemid 33215985)
23. C Lacomme S Santa Cruz 1999 Bax-induced cell death in tobacco is similar to the hypersensitive response Proc Natl Acad Sci USA 96 7956 7961 10393929 10.1073/pnas.96.14.7956 1:CAS:528:DyaK1MXltVOkurg%3D (Pubitemid 29328389)
24. SM Lee MH Hoang HJ Han HS Kim K Lee KE Kim DH Kim SY Lee WS Chung 2009 Pathogen inducible voltage-dependent anion channel (AtVDAC) isoforms are localized to mitochondria membrane in Arabidopsis Mol Cells 27 321 327 19326079 10.1007/s10059-009-0041-z 1:CAS:528:DC%2BD1MXjs1GqsbY%3D
25. MY Liu M Colombini 1991 Voltage gating of the mitochondrial outer membrane channel VDAC is regulated by a very conserved protein Am J Physiol Cell Physiol 260 C371 C374 1:CAS:528:DyaK3MXhvVSntL4%3D
26. M Madesh G Hajnoczky 2001 VDAC-dependent permeabilization of the outer mitochondrial membrane by superoxide induces rapid and massive cytochrome c release J Cell Biol 155 1003 1015 11739410 10.1083/jcb.200105057 1:CAS:528:DC%2BD3MXptVejsbs%3D (Pubitemid 34286251)
27. BM McDonald MM Wydro RN Lightowlers JH Lakey 2009 Probing the orientation of yeast VDAC1 in vivo FEBS Lett 583 739 742 19185576 10.1016/j.febslet.2009. 01.039 1:CAS:528:DC%2BD1MXitFSlsrc%3D
28. M Montal P Mueller 1972 Formation of bimolecular membranes from lipid monolayers and a study of their electrical properties Proc Natl Acad Sci USA 69 3561 3566 4509315 10.1073/pnas.69.12.3561 1:CAS:528:DyaE3sXmvVGhtA%3D%3D
29. H Nikaido EY Rosenberg 1981 Effect on solute size on diffusion rates through the transmembrane pores of the outer membrane of Escherichia coli J Gen Physiol 77 121 135 7021759 10.1085/jgp.77.2.121 1:CAS:528:DyaL3MXhtFOnurc%3D (Pubitemid 12192985)
30. 2+ microdomains to mitochondria J Cell Biol 159 613 624 12438411 10.1083/jcb.200205091 1:CAS:528:DC%2BD38XptVyqtb4%3D
31. EM Renkin 1954 Filtration, diffusion, and molecular sieving through porous cellulose membranes J Gen Physiol 38 225 243 13211998 1:STN:280:DyaG2M%2FitlKltw%3D%3D
32. TK Rostovtseva SM Bezrukov 1998 ATP transport through a single mitochondrial channel, VDAC, studied by current fluctuation analysis Biophys J 74 2365 2373 9591663 10.1016/S0006-3495(98)77945-7 1:CAS:528:DyaK1cXislWktLo%3D (Pubitemid 28225233)
33. T Rostovtseva M Colombini 1996 ATP flux is controlled by a voltage-gated channel from the mitochondrial outer membrane J Biol Chem 271 28006 28008 8910409 10.1074/jbc.271.45.28006 1:CAS:528:DyaK28XmvVWlsLc%3D (Pubitemid 26374603)
34. T Salinas AM Duchene L Delage S Nilsson E Glaser M Zaepfel L Marechal-Drouard 2006 The voltage-dependent anion channel, a major component of the tRNA import machinery in plant mitochondria Proc Natl Acad Sci USA 103 18362 18367 17105808 10.1073/pnas.0606449103 1:CAS:528:DC%2BD28XhtlWhsbzK (Pubitemid 44871662)
35. B Shanmugavadivu HJ Apell T Meins K Zeth JH Kleinschmidt 2007 Correct folding of the beta-barrel of the human membrane protein VDAC requires a lipid bilayer J Mol Biol 368 66 78 17336328 10.1016/j.jmb.2007.01.066 1:CAS:528:DC%2BD2sXjsVeqt7s%3D (Pubitemid 46441214)
36. S Shimizu Y Matsuoka Y Shinohara Y Yoneda Y Tsujimoto 2001 Essential role of voltage-dependent anion channel in various forms of apoptosis in mammalian cells J Cell Biol 152 237 250 11266442 10.1083/jcb.152.2.237 1:CAS:528:DC%2BD3MXnslensw%3D%3D (Pubitemid 34285595)
37. V Shoshan-Barmatz D Gincel 2003 The voltage-dependent anion channel: characterization, modulation, and role in mitochondrial function in cell life and death Cell Biochem Biophys 39 279 292 14716081 10.1385/CBB:39:3:279 1:CAS:528:DC%2BD2cXhtVKhsQ%3D%3D (Pubitemid 41270796)
38. V Shoshan-Barmatz A Israelson 2005 The voltage-dependent anion channel in endoplasmic/sarcoplasmic reticulum: characterization, modulation and possible function J Membr Biol 204 57 66 16151701 10.1007/s00232-005-0749-4 1:CAS:528:DC%2BD2MXpsVektrs%3D (Pubitemid 41285537)
39. V Shoshan-Barmatz N Keinan H Zaid 2008 Uncovering the role of VDAC in the regulation of cell life and death J Bioenerg Biomembr 40 183 191 18651212 10.1007/s10863-008-9147-9 1:CAS:528:DC%2BD1cXhtFCrsrzM
40. J Sun YX Wang MJ Sun 1999 Apoptosis and necrosis induced by sulfur mustard in Hela cells Zhongguo Yao Li Xue Bao 20 445 448 10678094 1:CAS:528:DyaK1MXjt1Omtbs%3D (Pubitemid 29240789)
41. C Tateda K Yamashita F Takahashi T Kusano Y Takahashi 2009 Plant voltage-dependent anion channels are involved in host defense against Pseudomonas cichorii and in Bax-induced cell death Plant Cell Rep 28 41 51 18953543 10.1007/s00299-008-0630-x 1:CAS:528:DC%2BD1cXhsVylsrzP
42. M Tejuca M Dalla Serra C Potrich C Alvarez G Menestrina 2001 Sizing the radius of the pore formed in erythrocytes and lipid vesicles by the toxin sticholysin I from the sea anemone Stichodactyla helianthus J Membr Biol 183 125 135 11562794 10.1007/s00232-001-0060-y 1:CAS:528:DC%2BD3MXntFWiu7s%3D (Pubitemid 32900464)
43. MG Vander Heiden NS Chandel XX Li PT Schumacker M Colombini CB Thompson 2000 Outer mitochondrial membrane permeability can regulate coupled respiration and cell survival Proc Natl Acad Sci USA 97 4666 4671 10781072 10.1073/pnas.090082297 1:CAS:528:DC%2BD3cXivFKjt7Y%3D (Pubitemid 30238615)
44. MG Vander Heiden XX Li E Gottleib RB Hill CB Thompson M Colombini 2001 Bcl-xL promotes the open configuration of the voltage-dependent anion channel and metabolite passage through the outer mitochondrial membrane J Biol Chem 276 19414 19419 11259441 10.1074/jbc.M101590200 1:CAS:528:DC%2BD3MXkt12rtrs%3D
45. L Veenman Y Shandalov M Gavish 2008 VDAC activation by the 18 kDa translocator protein (TSPO), implications for apoptosis J Bioenerg Biomembr 40 199 205 18670869 10.1007/s10863-008-9142-1 1:CAS:528:DC%2BD1cXhtFCrsr%2FN
46. M Wandrey B Trevaskis N Brewin MK Udvardi 2004 Molecular and cell biology of a family of voltage-dependent anion channel porins in Lotus japonicus Plant Physiol 134 182 193 14657408 10.1104/pp.103.031484 1:CAS:528: DC%2BD2cXhtVagurg%3D (Pubitemid 38178691)
47. MJ Young DC Bay G Hausner DA Court 2007 The evolutionary history of mitochondrial porins BMC Evol Biol 7 31 17328803 10.1186/1471-2148-7-31 (Pubitemid 46489924)
48. LS Zalman H Nikaido Y Kagawa 1980 Mitochondrial outer membrane contains a protein producing nonspecific diffusion channels J Biol Chem 255 1771 1774 7354054 1:CAS:528:DyaL3cXhsF2isro%3D