-
1
-
-
0036035079
-
Global analysis of the Bacillus subtilis Fur regulon and the iron starvation stimulon
-
Baichoo, N., T. Wang, R. Ye, and J. D. Helmann. 2002. Global analysis of the Bacillus subtilis Fur regulon and the iron starvation stimulon. Mol. Microbiol. 45:1613-1629.
-
(2002)
Mol. Microbiol.
, vol.45
, pp. 1613-1629
-
-
Baichoo, N.1
Wang, T.2
Ye, R.3
Helmann, J.D.4
-
2
-
-
33645803827
-
W-dependent genes that provide intrinsic resistance to antimicrobial compounds produced by Bacilli
-
W-dependent genes that provide intrinsic resistance to antimicrobial compounds produced by Bacilli. Mol. Microbiol. 60:765-782.
-
(2006)
Mol. Microbiol.
, vol.60
, pp. 765-782
-
-
Butcher, B.G.1
Helmann, J.D.2
-
4
-
-
0036307635
-
W regulon: a comparative analysis of promoter consensus search, run-off transcription/macroarray analysis (ROMA), and transcriptional profiling approaches
-
W regulon: a comparative analysis of promoter consensus search, run-off transcription/macroarray analysis (ROMA), and transcriptional profiling approaches. J. Mol. Biol. 316:443-457.
-
(2002)
J. Mol. Biol.
, vol.316
, pp. 443-457
-
-
Cao, M.1
-
5
-
-
0030726675
-
A null mutation in the Bacillus subtilis aconitase gene causes a block in Spo0Aphosphate-dependent gene expression
-
Craig, J. E., M. J. Ford, D. C. Blaydon, and A. L. Sonenshein. 1997. A null mutation in the Bacillus subtilis aconitase gene causes a block in Spo0Aphosphate-dependent gene expression. J. Bacteriol. 179:7351-7359.
-
(1997)
J. Bacteriol.
, vol.179
, pp. 7351-7359
-
-
Craig, J.E.1
Ford, M.J.2
Blaydon, D.C.3
Sonenshein, A.L.4
-
6
-
-
0038441327
-
Evolution experiments with microorganisms: the dynamics and genetic basis of adaptation
-
Elena, S. F., and R. E. Lenski. 2003. Evolution experiments with microorganisms: the dynamics and genetic basis of adaptation. Nat. Rev. Genet. 4:457-469.
-
(2003)
Nat. Rev. Genet.
, vol.4
, pp. 457-469
-
-
Elena, S.F.1
Lenski, R.E.2
-
7
-
-
0027465228
-
Bacillus subtilis sporulation: regulation of gene expression and control of morphogenesis
-
Errington, J. 1993. Bacillus subtilis sporulation: regulation of gene expression and control of morphogenesis. Microbiol. Mol. Biol. Rev. 57:1-33.
-
(1993)
Microbiol. Mol. Biol. Rev.
, vol.57
, pp. 1-33
-
-
Errington, J.1
-
8
-
-
20044375201
-
Large-scale in vivo flux analysis shows rigidity and suboptimal performance of Bacillus subtilis metabolism
-
Fischer, E., and U. Sauer. 2005. Large-scale in vivo flux analysis shows rigidity and suboptimal performance of Bacillus subtilis metabolism. Nat. Genet. 37:636-640.
-
(2005)
Nat. Genet.
, vol.37
, pp. 636-640
-
-
Fischer, E.1
Sauer, U.2
-
9
-
-
35148899681
-
Stress-induced mutagenesis in bacteria
-
Foster, P. L. 2007. Stress-induced mutagenesis in bacteria. Crit. Rev. Biochem. Mol. Biol. 42:373-397.
-
(2007)
Crit. Rev. Biochem. Mol. Biol.
, vol.42
, pp. 373-397
-
-
Foster, P.L.1
-
10
-
-
47049087429
-
Regulation of the Bacillus subtilis yciC gene and insights into the DNA-binding specificity of the zinc-sensing metalloregulator Zur
-
Gabriel, S. E., F. Miyagi, A. Gaballa, and J. D. Helmann. 2008. Regulation of the Bacillus subtilis yciC gene and insights into the DNA-binding specificity of the zinc-sensing metalloregulator Zur. J. Bacteriol. 190:3482-3488.
-
(2008)
J. Bacteriol.
, vol.190
, pp. 3482-3488
-
-
Gabriel, S.E.1
Miyagi, F.2
Gaballa, A.3
Helmann, J.D.4
-
11
-
-
80052965307
-
Two genome sequences of the same bacterial strain, Gluconacetobacter diazotrophicus PAl 5, suggest a new standard in genome sequence submission
-
Giongo, A., H. L. Tyler, U. N. Zipperer, and E. W. Triplett. 2010. Two genome sequences of the same bacterial strain, Gluconacetobacter diazotrophicus PAl 5, suggest a new standard in genome sequence submission. Stand. Genomic Sci. 2:309-317.
-
(2010)
Stand. Genomic Sci.
, vol.2
, pp. 309-317
-
-
Giongo, A.1
Tyler, H.L.2
Zipperer, U.N.3
Triplett, E.W.4
-
12
-
-
0024344173
-
Two related superfamilies of putative helicases involved in replication, recombination, repair, and expression of DNA and RNA
-
Gorbalenya, A. E., E. Koonin, A. P. Donchenko, and V. M. Blinov. 1989. Two related superfamilies of putative helicases involved in replication, recombination, repair, and expression of DNA and RNA. Nucleic Acids Res. 17: 4713-4730.
-
(1989)
Nucleic Acids Res
, vol.17
, pp. 4713-4730
-
-
Gorbalenya, A.E.1
Koonin, E.2
Donchenko, A.P.3
Blinov, V.M.4
-
14
-
-
0037402339
-
Is modularity necessary for evolvability? Remarks on the relationship between pleiotropy and evolvability
-
Hansen, T. 2003. Is modularity necessary for evolvability? Remarks on the relationship between pleiotropy and evolvability. Biosystems 69:83-94.
-
(2003)
Biosystems
, vol.69
, pp. 83-94
-
-
Hansen, T.1
-
15
-
-
0024095421
-
Cloning and characterization of a Bacillus subtilis transcription unit involved in ATP-dependent DNase synthesis
-
Kooistra, J., B. Vosman, and G. Venema. 1988. Cloning and characterization of a Bacillus subtilis transcription unit involved in ATP-dependent DNase synthesis. J. Bacteriol. 170:4791-4797.
-
(1988)
J. Bacteriol.
, vol.170
, pp. 4791-4797
-
-
Kooistra, J.1
Vosman, B.2
Venema, G.3
-
16
-
-
0028930138
-
Mutational analysis of the redox-sensitive transcriptional regulator OxyR: regions important for DNA binding and multimerization
-
Kullik, I., J. Stevens, M. B. Toledano, and G. Storz. 1995. Mutational analysis of the redox-sensitive transcriptional regulator OxyR: regions important for DNA binding and multimerization. J. Bacteriol. 177:1285-1291.
-
(1995)
J. Bacteriol.
, vol.177
, pp. 1285-1291
-
-
Kullik, I.1
Stevens, J.2
Toledano, M.B.3
Storz, G.4
-
18
-
-
58149483354
-
Transcriptome divergence and the loss of plasticity in Bacillus subtilis after 6,000 generations of evolution under relaxed selection for sporulation
-
Maughan, H., C. W. Birky, and W. L. Nicholson. 2009. Transcriptome divergence and the loss of plasticity in Bacillus subtilis after 6,000 generations of evolution under relaxed selection for sporulation. J. Bacteriol. 191:428-433.
-
(2009)
J. Bacteriol.
, vol.191
, pp. 428-433
-
-
Maughan, H.1
Birky, C.W.2
Nicholson, W.L.3
-
19
-
-
33745277137
-
The population genetics of phenotypic deterioration in experimental populations of Bacillus subtilis
-
Maughan, H., et al. 2006. The population genetics of phenotypic deterioration in experimental populations of Bacillus subtilis. Evolution 60:686-695.
-
(2006)
Evolution
, vol.60
, pp. 686-695
-
-
Maughan, H.1
-
20
-
-
35549010554
-
The roles of mutation accumulation and selection in loss of sporulation in experimental populations of Bacillus subtilis
-
Maughan, H., J. Masel, C. W. Birky, and W. L. Nicholson. 2007. The roles of mutation accumulation and selection in loss of sporulation in experimental populations of Bacillus subtilis. Genetics 177:937-948.
-
(2007)
Genetics
, vol.177
, pp. 937-948
-
-
Maughan, H.1
Masel, J.2
Birky, C.W.3
Nicholson, W.L.4
-
21
-
-
79960092523
-
Increased fitness and the alteration of metabolic pathways during Bacillus subtilis laboratory evolution
-
Maughan, H., and W. L. Nicholson. 2011. Increased fitness and the alteration of metabolic pathways during Bacillus subtilis laboratory evolution. Appl. Environ. Microbiol. 77:4105-4118.
-
(2011)
Appl. Environ. Microbiol.
, vol.77
, pp. 4105-4118
-
-
Maughan, H.1
Nicholson, W.L.2
-
22
-
-
33846009817
-
Comprehensive alanine-scanning mutagenesis of Escherichia coli CsrA defines two subdomains of critical functional importance
-
Mercante, J., K. Suzuki, X. Cheng, P. Babitzke, and T. Romeo. 2006. Comprehensive alanine-scanning mutagenesis of Escherichia coli CsrA defines two subdomains of critical functional importance. J. Biol. Chem. 281:31832-31842.
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 31832-31842
-
-
Mercante, J.1
Suzuki, K.2
Cheng, X.3
Babitzke, P.4
Romeo, T.5
-
23
-
-
0003785155
-
-
Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
-
Miller, J. H. 1972. Experiments in molecular genetics. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
-
(1972)
Experiments in molecular genetics
-
-
Miller, J.H.1
-
24
-
-
0035479142
-
Deletional bias and the evolution of bacterial genomes
-
Mira, A., H. Ochman, and N. A. Moran. 2001. Deletional bias and the evolution of bacterial genomes. Trends Genet. 17:589-596.
-
(2001)
Trends Genet
, vol.17
, pp. 589-596
-
-
Mira, A.1
Ochman, H.2
Moran, N.A.3
-
25
-
-
0028066920
-
Helicase motifs V and VI of the Escherichia coli UvrB protein of the UvrABC endonuclease are essential for the formation of the preincision complex
-
Moolenaar, G. F., R. Visse, M. Ortiz-Buysse, N. Goosen, and P. van de Putte. 1994. Helicase motifs V and VI of the Escherichia coli UvrB protein of the UvrABC endonuclease are essential for the formation of the preincision complex. J. Mol. Biol. 240:294-307.
-
(1994)
J. Mol. Biol.
, vol.240
, pp. 294-307
-
-
Moolenaar, G.F.1
Visse, R.2
Ortiz-Buysse, M.3
Goosen, N.4
van de Putte, P.5
-
26
-
-
15744374882
-
Metal ion homeostasis in Bacillus subtilis
-
Moore, C. M., and J. D. Helmann. 2005. Metal ion homeostasis in Bacillus subtilis. Curr. Opin. Microbiol. 8:188-195.
-
(2005)
Curr. Opin. Microbiol.
, vol.8
, pp. 188-195
-
-
Moore, C.M.1
Helmann, J.D.2
-
27
-
-
58449126084
-
The dynamics and time scale of ongoing genomic erosion in symbiotic bacteria
-
Moran, N. A., H. J. McLaughlin, and R. Sorek. 2009. The dynamics and time scale of ongoing genomic erosion in symbiotic bacteria. Science 323:379-382.
-
(2009)
Science
, vol.323
, pp. 379-382
-
-
Moran, N.A.1
McLaughlin, H.J.2
Sorek, R.3
-
28
-
-
0032560491
-
The complete genome of Bacillus subtilis: from sequence annotation to data management and analysis
-
Moszer, I. 1998. The complete genome of Bacillus subtilis: from sequence annotation to data management and analysis. FEBS Lett. 430:28-36.
-
(1998)
FEBS Lett
, vol.430
, pp. 28-36
-
-
Moszer, I.1
-
29
-
-
0028935455
-
SubtiList: a relational database for the Bacillus subtilis genome
-
Moszer, I., P. Glaser, and A. Danchin. 1995. SubtiList: a relational database for the Bacillus subtilis genome. Microbiology 141:261-268.
-
(1995)
Microbiology
, vol.141
, pp. 261-268
-
-
Moszer, I.1
Glaser, P.2
Danchin, A.3
-
30
-
-
0017691981
-
Mapping of the genes controlling excision repair of pyrimidine photoproducts in Bacillus subtilis
-
Munakata, N. 1977. Mapping of the genes controlling excision repair of pyrimidine photoproducts in Bacillus subtilis. Mol. Gen. Genet. 156:49-54.
-
(1977)
Mol. Gen. Genet.
, vol.156
, pp. 49-54
-
-
Munakata, N.1
-
31
-
-
0033028580
-
Relationship of Bacillus subtilis clades associated with strains 168 and W23: a proposal for Bacillus subtilis subsp. subtilis subsp. nov. and Bacillus subtilis subsp. spizizenii subsp. nov
-
Nakamura, L. K., M. S. Roberts, and F. M. Cohan. 1999. Relationship of Bacillus subtilis clades associated with strains 168 and W23: a proposal for Bacillus subtilis subsp. subtilis subsp. nov. and Bacillus subtilis subsp. spizizenii subsp. nov. Int. J. Syst. Bacteriol. 49:1211-1215.
-
(1999)
Int. J. Syst. Bacteriol.
, vol.49
, pp. 1211-1215
-
-
Nakamura, L.K.1
Roberts, M.S.2
Cohan, F.M.3
-
32
-
-
0002077260
-
Motility and chemotaxis in Bacillus subtilis
-
A. Sonenshein, J. A. Hoch, and R. Losick (ed.), ASM Press, Washington, DC
-
Ordal, G. W., L. M. Márquez-Magaña, and M. J. Chamberlin. 1992. Motility and chemotaxis in Bacillus subtilis, p. 765-784. In A. Sonenshein, J. A. Hoch, and R. Losick (ed.), Bacillus subtilis and other gram-positive bacteria: biochemistry, physiology, and molecular genetics. ASM Press, Washington, DC.
-
(1992)
Bacillus subtilis and other gram-positive bacteria: biochemistry, physiology, and molecular genetics
, pp. 765-784
-
-
Ordal, G.W.1
Márquez-Magaña, L.M.2
Chamberlin, M.J.3
-
33
-
-
79952972019
-
Adaptive laboratory evolution
-
Palsson, B. 2011. Adaptive laboratory evolution. Microbe 6:69-74.
-
(2011)
Microbe
, vol.6
, pp. 69-74
-
-
Palsson, B.1
-
34
-
-
0002654443
-
Two-component systems, phosphorelays, and regulation of their activities by phosphatases
-
A. L. Sonenshein, J. A. Hoch, and R. Losick (ed.). ASM Press, Washington, DC
-
Perego, M., and J. A. Hoch. 2002. Two-component systems, phosphorelays, and regulation of their activities by phosphatases, p. 473-481. In A. L. Sonenshein, J. A. Hoch, and R. Losick (ed.). Bacillus subtilis and its closest relatives: from genes to cells. ASM Press, Washington, DC.
-
(2002)
Bacillus subtilis and its closest relatives: from genes to cells
, pp. 473-481
-
-
Perego, M.1
Hoch, J.A.2
-
35
-
-
10744227664
-
Transcriptional regulation of genes encoding arabinan-degrading enzymes in Bacillus subtilis
-
Raposo, M. P., J. M. Inácio, L. J. Mota, and I. de Sá-Nogueira. 2004. Transcriptional regulation of genes encoding arabinan-degrading enzymes in Bacillus subtilis. J. Bacteriol. 186:1287-1296.
-
(2004)
J. Bacteriol.
, vol.186
, pp. 1287-1296
-
-
Raposo, M.P.1
Inácio, J.M.2
Mota, L.J.3
de Sá-Nogueira, I.4
-
36
-
-
0027167447
-
Regulation of the Bacillus subtilis alsS, aslD, and alsR genes involved in post-exponentialphase production of acetoin
-
Renna, M. C., N. Najimudin, L. R. Winik, and S. A. Zahler. 1993. Regulation of the Bacillus subtilis alsS, aslD, and alsR genes involved in post-exponentialphase production of acetoin. J. Bacteriol. 175:3863-3875.
-
(1993)
J. Bacteriol.
, vol.175
, pp. 3863-3875
-
-
Renna, M.C.1
Najimudin, N.2
Winik, L.R.3
Zahler, S.A.4
-
37
-
-
85056036546
-
Influence of fecal sample storage on bacterial community diversity
-
Roesch, L. W. F., et al. 2009. Influence of fecal sample storage on bacterial community diversity. Open Microbiol. J. 3:40-46.
-
(2009)
Open Microbiol. J.
, vol.3
, pp. 40-46
-
-
Roesch, L.W.F.1
-
38
-
-
34247505029
-
Homologous recombination in low dC+dG Gram-positive bacteria
-
Sanchez, H., B. Carrasco, S. Ayora, and J. C. Alonso. 2007. Homologous recombination in low dC+dG Gram-positive bacteria. Top. Curr. Genet. 17:27-52.
-
(2007)
Top. Curr. Genet.
, vol.17
, pp. 27-52
-
-
Sanchez, H.1
Carrasco, B.2
Ayora, S.3
Alonso, J.C.4
-
39
-
-
52649177781
-
Dynamics of DNA double-strand break repair in Bacillus subtilis
-
P. Graumann (ed.), Caister Academic Press, Wymondham, United Kingdom
-
Sanchez, H., B. Carrasco, S. Ayora, and J. C. Alonso. 2007. Dynamics of DNA double-strand break repair in Bacillus subtilis, p. 43-66. In P. Graumann (ed.), Bacillus: cellular and molecular biology. Caister Academic Press, Wymondham, United Kingdom.
-
(2007)
Bacillus: cellular and molecular biology
, pp. 43-66
-
-
Sanchez, H.1
Carrasco, B.2
Ayora, S.3
Alonso, J.C.4
-
42
-
-
1642415938
-
Systematic analysis of SigD-regulated genes in Bacillus subtilis by DNA microarray and Northern blotting analyses
-
Serizawa, M., et al. 2004. Systematic analysis of SigD-regulated genes in Bacillus subtilis by DNA microarray and Northern blotting analyses. Gene 329:125-136.
-
(2004)
Gene
, vol.329
, pp. 125-136
-
-
Serizawa, M.1
-
43
-
-
0037112910
-
MinCD-dependent regulation of the polarity of SpoIIIE assembly and DNA transfer
-
Sharp, M. D., and K. Pogliano. 2002. MinCD-dependent regulation of the polarity of SpoIIIE assembly and DNA transfer. EMBO J. 21:6267-6274.
-
(2002)
EMBO J
, vol.21
, pp. 6267-6274
-
-
Sharp, M.D.1
Pogliano, K.2
-
44
-
-
38549162091
-
DBTBS: a database of transcriptional regulation in Bacillus subtilis containing upstream intergenic conservation information
-
Sierro, N., Y. Makita, M. J. L. de Hoon, and K. Nakai. 2008. DBTBS: a database of transcriptional regulation in Bacillus subtilis containing upstream intergenic conservation information. Nucleic Acids Res. 36:D93-D96.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Sierro, N.1
Makita, Y.2
de Hoon, M.J.L.3
Nakai, K.4
-
45
-
-
0001884542
-
The Krebs citric acid cycle
-
A. L. Sonenshein, J. A. Hoch, and R. Losick (ed.), ASM Press, Washington, DC
-
Sonenshein, A. L. 2002. The Krebs citric acid cycle, p. 151-162. In A. L. Sonenshein, J. A. Hoch, and R. Losick (ed.), Bacillus subtilis and its closest relatives: from genes to cells. ASM Press, Washington, DC.
-
(2002)
Bacillus subtilis and its closest relatives: from genes to cells
, pp. 151-162
-
-
Sonenshein, A.L.1
-
46
-
-
0003675244
-
-
(ed.). ASM Press, Washington, DC
-
Sonenshein, A. L., J. A. Hoch, and R. Losick (ed.). 2002. Bacillus subtilis and its closest relatives: from genes to cells. ASM Press, Washington, DC.
-
(2002)
Bacillus subtilis and its closest relatives: from genes to cells
-
-
Sonenshein, A.L.1
Hoch, J.A.2
Losick, R.3
-
47
-
-
0001615271
-
Transformation of biochemically deficient strains of Bacillus subtilis by deoxyribonucleate
-
Spizizen, J. 1958. Transformation of biochemically deficient strains of Bacillus subtilis by deoxyribonucleate. Proc. Natl. Acad. Sci. U. S. A. 44:1072-1078.
-
(1958)
Proc. Natl. Acad. Sci. U. S. A.
, vol.44
, pp. 1072-1078
-
-
Spizizen, J.1
-
48
-
-
0030457111
-
Molecular genetics of sporulation in Bacillus subtilis
-
Stragier, P., and R. Losick. 1996. Molecular genetics of sporulation in Bacillus subtilis. Annu. Rev. Genet. 30:297-341.
-
(1996)
Annu. Rev. Genet.
, vol.30
, pp. 297-341
-
-
Stragier, P.1
Losick, R.2
-
49
-
-
0027506115
-
Transition-state regulators: Sentinels of Bacillus subtilis post-exponential gene expression
-
Strauch, M. A., and J. A. Hoch. 1993. Transition-state regulators: Sentinels of Bacillus subtilis post-exponential gene expression. Mol. Microbiol. 7:337-342.
-
(1993)
Mol. Microbiol.
, vol.7
, pp. 337-342
-
-
Strauch, M.A.1
Hoch, J.A.2
-
50
-
-
0042242609
-
The evolution of mutator genes in bacterial populations: the roles of environmental change and timing
-
Tanaka, M. M., C. T. Bergstrom, and B. R. Levin. 2003. The evolution of mutator genes in bacterial populations: the roles of environmental change and timing. Genetics 164:843-854.
-
(2003)
Genetics
, vol.164
, pp. 843-854
-
-
Tanaka, M.M.1
Bergstrom, C.T.2
Levin, B.R.3
-
51
-
-
0033573066
-
Crystal structure of UvrB, a DNA helicase adapted for excision repair
-
Theis, K., P. J. Chen, M. Skorvaga, B. Van Houten, and C. Kisker. 1999. Crystal structure of UvrB, a DNA helicase adapted for excision repair. EMBO J. 18:6899-6907.
-
(1999)
EMBO J
, vol.18
, pp. 6899-6907
-
-
Theis, K.1
Chen, P.J.2
Skorvaga, M.3
Van Houten, B.4
Kisker, C.5
-
52
-
-
79953177394
-
The AddAB helicase-nuclease catalyses rapid and processive DNA unwinding using a single Superfamily 1A motor domain
-
Yeeles, J. T. P., E. J. Gwynn, M. R. Webb, and M. S. Dillingham. 2011. The AddAB helicase-nuclease catalyses rapid and processive DNA unwinding using a single Superfamily 1A motor domain. Nucleic Acids Res. 39:2271-2285.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. 2271-2285
-
-
Yeeles, J.T.P.1
Gwynn, E.J.2
Webb, M.R.3
Dillingham, M.S.4
-
53
-
-
0037336620
-
The structure of full-length LysR-type transcriptional regulators: modeling of the full-length OxyR transcription factor dimer
-
Zaim, J., and A. M. Kierzek. 2003. The structure of full-length LysR-type transcriptional regulators: modeling of the full-length OxyR transcription factor dimer. Nucleic Acids Res. 31:1444-1454.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 1444-1454
-
-
Zaim, J.1
Kierzek, A.M.2
-
54
-
-
0042121256
-
Mfold web server for nucleic acid folding and hybridization prediction
-
Zuker, M. 2003. Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res. 31:3406-3415.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3406-3415
-
-
Zuker, M.1
|