New microsatellite markers developed from Urochloa humidicola (Poaceae) and cross amplification in different Urochloa species

BMC Research Notes

Volumn 4, Issue , 2011, Pages

  Vigna, Bianca B Z ^a,b   Alleoni, Guilherme C ^a   Jungmann, Leticia ^b   Do Valle, Cacilda B ^b   De Souza, Anete P ^a  

^a UNIVERSITY OF CAMPINAS   (Brazil)

^b EMBRAPA CERRADOS   (Brazil)

Author keywords

[No Author keywords available]

Indexed keywords

POACEAE; TETRA; UROCHLOA; UROCHLOA BRIZANTHA; UROCHLOA DECUMBENS; UROCHLOA DICTYONEURA; UROCHLOA HUMIDICOLA; UROCHLOA RUZIZIENSIS;

EID: 82655171599     PISSN: None     EISSN: 17560500     Source Type: Journal    
DOI: 10.1186/1756-0500-4-523     Document Type: Article

References (31)

1. Revisián de las especies sudamericanas nativas y introducidas de los géneros Brachiaria y Urochloa (Poaceae: Panicoideae: Paniceae). Morrone O, Zuloaga FO, Darwiniana 1992 31 43 109
2. Natural variation in Brachiaria and existing germplasm collections. Keller-Grein G, Maass BL, Hanson J, Brachiaria: biology, agronomy and improvement Cali: Embrapa/CIAT, Miles JW, Maass BL, Valle CB, 1 1996 16 42
3. Abnormal cytokinesis in microsporogenesis of Brachiaria humidicola (Poaceae: Paniceae). Adamowski EV, Boldrini KR, Pagliarini MS, Valle CB, Genet Mol Res 2007 6 616 621 18050080 (Pubitemid 350096895)
4. Meiotic behavior of a nonaploid accession endorses x = 6 for Brachiaria humidicola (Poaceae). Boldrini KR, Pagliarini MS, do Valle CB, Genet Mol Res 2009 8 1444 1450 10.4238/vol8-4gmr679 20013658
5. Origin of a polyploid accession of Brachiaria humidicola (Poaceae: Panicoideae: Paniceae). Boldrini KR, Micheletti PL, Gallo PH, Mendes-Bonato AB, Pagliarini MS, do Valle CB, Genet Mol Res 2009 8 888 895 10.4238/vol8-3gmr617 19731211
6. Evidence of natural hybridization in Brachiaria humidicola (Rendle) Schweick. (Poaceae: Panicoideae: Paniceae). Boldrini KR, Pagliarini MS, do Valle CB, J Genet 2010 89 91 94 10.1007/s12041-010-0016-z 20505251
7. Genetics, cytogenetics and reproductive biology of Brachiaria. Valle CB, Savidan YH, Brachiaria: biology, agronomy and improvement Cali: Embrapa/CIAT, Miles JW, Maass BL, Valle CB, 1 1996 147 163
8. Genetics of apospory in apomictic in Ranunculus auricomus. 5. Conclusion. Nogler GA, Bot Helv 1984 94 411 422
9. Morphology, taxonomy and natural distribution of Brachiaria (Trin.) Griseb. Renvoize SA, Clayton WD, Kabuye CHS, Brachiaria: biology, agronomy and improvement Cali: Embrapa/CIAT, Miles JW, Maass BL, Valle CB, 1 1996 1 15
10. Microsatellites: genomic distribution, putative functions and mutational mechanisms: a review. Li YC, Korol AB, Fahima T, Beiles A, Nevo E, Mol Ecol 2002 11 2453 2465 10.1046/j.1365-294X.2002.01643.x 12453231 (Pubitemid 35436668)
11. Cross-species amplification of 36 cyprinid microsatellite loci in Phoxinus phoxinus (L.) and Scardinius erythrophthalamus (L.). Holmen J, Vollestad LA, Jakobsen KS, Primer CR, BMC Res Notes 2009 2 248 10.1186/1756-0500-2-248 20003440
12. Microsatellite-enriched libraries: applied methodology for the development of SSR markers in tropical crops. Billotte N, Lagoda PJR, Risterucci AM, Baurens FC, Fruits 1999 54 277 288
13. Development of microsatellite markers in Guineagrass (Panicum maximum Jacq.) and their transferability to other tropical forage grass species. Sousa ACB, Jungmann L, Campos T, Sforça DA, Boaventura LR, Silva GMB, Zucchi MI, Jank L, de Souza AP, Plant Breed 2011 130 104 108 10.1111/j.1439-0523.2010. 01779.x
14. Drosophila mediopunctata II: cross-species amplification in the tripunctata group and other Drosophila species. Laborda PR, Klaczko LB, de Souza AP, Conserv Genet Resour 2009 01 281 296 10.1007/s12686-009-9069-9
15. Estudos genético-moleculares no gênero Paspalum L. (Poaceae: Panicoideae: Paniceae). Cidade FW, PhD thesis University of Campinas, Genetics Department 2011
16. Development of microsatellite markers for Brachiaria humidicola (Rendle) Schweick. Jungmann L, Vigna BBZ, Paiva J, Sousa ACB, do Valle CB, Laborda PR, Zucchi MI, de Souza AP, Conserv Genet Resour 2009 01 475 479 10.1007/s12686-009-9111-y
17. Genetic diversity and population structure analysis of the tropical pasture grass Brachiaria humidicola based on microsatellites, cytogenetics, morphological traits, and geographical origin. Jungmann L, Vigna BBZ, Boldrini KR, Sousa ACB, do Valle CB, Resende SMS, Pagliarini MS, Zucchi MI, de Souza AP, Genome 2010 53 698 709 10.1139/G10-055 20924419
18. Analysis of Allele Fidelity, Polymorphic Information Content, and Density of Microsatellites in a Genome-Wide Screening for Hip Dysplasia in a Crossbreed Pedigree. Mateescu RG, Zhang Z, Tsai K, Phavaphutanon J, Burton Wursten NI, Lust G, Quaas R, Murphy K, Acland GM, Todhunter RJ, J Hered 2005 96 847 853 10.1093/jhered/esi109 16251522 (Pubitemid 41752448)
19. Optimization of the choice of molecular markers for varietal identification in Vitis vinifera L. Tessier C, David J, This P, Boursiquot JM, Charrier A, Theor Appl Genet 1999 98 171 177 10.1007/s001220051054 (Pubitemid 29167231)
20. Inference of population structure using multilocus genotype data. Pritchard JK, Stephens M, Donnelly P, Genetics 2000 155 945 959 10835412 (Pubitemid 30397141)
21. Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Evanno G, Regnaut S, Goudet J, Mol Ecol 2005 14 2611 2620 10.1111/j.1365-294X.2005.02553.x 15969739 (Pubitemid 40886055)
22. The development and use of microsatellite markers for genetic analysis and plant breeding with emphasis on bread wheat. Gupta PK, Varshney RK, Euphytica 2000 113 163 85 10.1023/A:1003910819967 (Pubitemid 30347622)
23. Molecular and morphological phylogenetic analysis of Brachiaria and Urochloa (Poaceae). Gonzalez AMT, Morton CM, Mol Phylogenet Evol 2005 37 36 44 10.1016/j.ympev.2005.06.003 16039145 (Pubitemid 41338028)
24. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Doyle JJ, Doyle JL, Phytochem Bull 1987 19 11 15
25. Computational and experimental analysis of microsatellites in rice (Oryza sativa L.): frequency, length variation, transposon associations, and genetic marker potential. Temnykh S, DeClerck G, Lukashova A, Lipovich L, Cartinhour S, McCouch S, Genome Res 2001 11 1441 1452 10.1101/gr.184001 11483586 (Pubitemid 32771552)
26. Primer3Plus, an enhanced web interface to Primer3. Untergasser A, Nijveen H, Rao X, Bisseling T, Geurts R, Leunissen JA, Nucleic Acids Res 2007 35 71 W74 10.1093/nar/gkm306 17485472
27. Detection of single sequence repeat polymorphisms in denature polyacrylamide sequencing gels by silver staining. Creste S, Tulmann Neto A, Figueira A, Plant Mol Bio Rep 2001 19 299 306 10.1007/BF02772828 (Pubitemid 33695185)
28. Etude comparative de la distribution florale dans une portion des Alpes et du Jura. Jaccard P, Bull Soc Vaud Sc Nat 1901 37 547 579
29. Sneath PHA, Sokal RR, Numerical taxonomy San Francisco: Freeman 1973
30. Rohlf FJ, NTSYSpc: numerical taxonomy and multivariate analyses system New York: Applied Biostatistics 2000 Version 2.11X
31. Coelho ASG, Software BOOD version 3.0 Laboratário Genética Vegetal, DBG/ICB: UFG 2002