Second order regulator Collier directly controls intercalary-specific segment polarity gene expression

Developmental Biology

Volumn 360, Issue 2, 2011, Pages 403-414

  Ntini, Evgenia ^a   Wimmer, Ernst A ^a  

^a UNIVERSITY OF GÖTTINGEN   (Germany)

Author keywords

Cis regulatory element; Head development; Metamerization; Segmentation; Transcriptional control

Indexed keywords

TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR CAP N COLLAR B; TRANSCRIPTION FACTOR COLLIER; UNCLASSIFIED DRUG;

ARTICLE; BINDING AFFINITY; BINDING SITE; CONTROLLED STUDY; DIMERIZATION; DNA BINDING; DOWN REGULATION; DROSOPHILA; EMBRYO; GENE; GENE EXPRESSION; HEAD; HEDGEHOG GENE; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN PROTEIN INTERACTION; REGULATORY SEQUENCE; TRANSCRIPTION REGULATION;

ERINACEIDAE;

EID: 82555187785     PISSN: 00121606     EISSN: 1095564X     Source Type: Journal    
DOI: 10.1016/j.ydbio.2011.09.035     Document Type: Article

References (63)

1. Abzhanov A., Kaufman T.C. Homeotic genes and the arthropod head: expression patterns of the labial, proboscipedia, and Deformed genes in crustaceans and insects. Proc. Natl. Acad. Sci. U. S. A. 1999, 96:10224-10229.
2. Bejerano G., Siepel A.C., Kent W.J., Haussler D. Computational screening of conserved genomic DNA in search of functional noncoding elements. Nat. Methods 2005, 2:535-545.
3. Bischof J., Maeda R.K., Hediger M., Karch F., Basler K. An optimized transgenesis system for Drosophila using germ-line-specific phiC31 integrases. Proc. Natl. Acad. Sci. U. S. A. 2007, 104:3312-3317.
4. Brand A.H., Perrimon N. Targeted gene expression as a means of altering cell fates and generating dominant phenotypes. Development 1993, 118:401-415.
5. Campos-Ortega J.A., Hartenstein V. The embryonic development of Drosophila melanogaster 1997, Springer-Verlag Berlin Heidelberg, Germany. 2nd edition.
6. d of a protein using EMSA and oligonucleotide competition. Transcriptional Regulation in Eukaryotes 2000, 263-265. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York, USA.
7. Cartharius K., Frech K., Grote K., Klocke B., Haltmeier M., Klingenhoff A., Frisch M., Bayerlein M., Werner T. MatInspector and beyond: promoter analysis based on transcription factor binding sites. Bioinformatics 2005, 21:2933-2942.
8. Chipman A.D., Akam M. The segmentation cascade in the centipede Strigamia maritima: involvement of the Notch pathway and pair-rule gene homologues. Dev. Biol. 2008, 319:60-169.
9. Cohen S.M., Jürgens G. Mediation of Drosophila head development by gap-like segmentation genes. Nature 1990, 346:482-485.
10. Cohen S., Jürgens G. Drosophila headlines. Trends Genet. 1991, 7:267-272.
11. Cokol M., Nair R., Rost B. Finding nuclear localization signals. EMBO Rep. 2000, 1:411-415.
12. Crozatier M., Valle D., Dubois L., Ibnsouda S., Vincent A. Collier, a novel regulator of Drosophila head development, is expressed in a single mitotic domain. Curr. Biol. 1996, 6:707-718.
13. Crozatier M., Valle D., Dubois L., Ibnsouda S., Vincent A. Head versus trunk patterning in the Drosophila embryo; collier requirement for formation of the intercalary segment. Development 1999, 126:4385-4394.
14. Daburon V., Mella S., Plouhinec J.L., Mazan S., Crozatier M., Vincent A. The metazoan history of the COE transcription factors. Selection of a variant HLH motif by mandatory inclusion of a duplicated exon in vertebrates. BMC Evol. Biol. 2008, 8:131.
15. Damen W.G. Parasegmental organization of the spider embryo implies that the parasegment is an evolutionary conserved entity in arthropod embryogenesis. Development 2002, 129:1239-1250.
16. Diederich R.J., Merrill V.K., Pultz M.A., Kaufman T.C. Isolation, structure, and expression of labial, a homeotic gene of the antennapedia complex involved in Drosophila head development. Genes Dev. 1989, 3:399-414.
17. Dietzl G., Chen D., Schnorrer F., Su K.C., Barinova Y., Fellner M., Gasser B., Kinsey K., Oppel S., Scheiblauer S., Couto A., Marra V., Keleman K., Dickson B.J. A genome-wide transgenic RNAi library for conditional gene inactivation in Drosophila. Nature 2007, 448:151-156.
18. Dray N., Tessmar-Raible K., Le Gouar M., Vibert L., Christodoulou F., Schipany K., Guillou A., Zantke J., Snyman H., Béhague J., Vervoort M., Arendt D., Balavoine G. Hedgehog signaling regulates segment formation in the annelid Platynereis. Science 2010, 329:339-342.
19. Du J.X., Bialkowska A.B., McConnell B.B., Yang V.W. SUMOylation regulates nuclear localization of Krüppel-like factor 5. J. Biol. Chem. 2008, 283:31991-32002.
20. Dubois L., Enriquez J., Daburon V., Crozet F., Lebreton G., Crozatier M., Vincent A. Collier transcription in a single Drosophila muscle lineage: the combinatorial control of muscle identity. Development 2007, 134:4347-4355.
21. Finkelstein R., Perrimon N. The molecular genetics of head development in Drosophila melanogaster. Development 1991, 112:899-912.
22. Gallitano-Mendel A., Finkelstein R. Novel segment polarity gene interactions during embryonic head development in Drosophila. Dev. Biol. 1997, 192:599-613.
23. Gallitano-Mendel A., Finkelstein R. Ectopic orthodenticle expression alters segment polarity gene expression but not head segment identity in the Drosophila embryo. Dev. Biol. 1998, 199:125-137.
24. Grossniklaus U., Cadigan K.M., Gehring W.J. Three maternal coordinate systems cooperate in the patterning of the Drosophila head. Development 1994, 120:3155-3171.
25. Hagman J., Gutch M.J., Lin H., Grosschedl R. EBF contains a novel zinc coordination motif and multiple dimerization and transcriptional activation domains. EMBO J. 1995, 14:2907-2916.
26. Holland L.Z., Kene M., Williams N.A., Holland N.D. Sequence and embryonic expression of the amphioxus engrailed gene (AmphiEn): the metameric pattern of transcription resembles that of its segment-polarity homolog in Drosophila. Development 1997, 124:723-1732.
27. Jackson D.J., Meyer N.P., Seaver E., Pang K., McDougall C., Moy V.N., Gordon K., Degnan B.M., Martindale M.Q., Burke R.D., Peterson K.J. Developmental expression of COE across the Metazoa supports a conserved role in neuronal cell-type specification and mesodermal development. Dev. Genes Evol 2010, 10.1007/s00427-010-0343-3.
28. Janody F., Reischl J., Dostatni N. Persistence of Hunchback in the terminal region of the Drosophila blastoderm embryo impairs anterior development. Development 2000, 127:1573-1582.
29. Liu G.H., Gerace L. Sumoylation regulates nuclear localization of lipin-1alpha in neuronal cells. PLoS One 2009, 4:e7031.
30. Loots G., Ovcharenko I., Pachter L., Dubchak I., Rubin E. rVISTA for comparative sequence-based discovery of functional transcription factor binding sites. Genome Res. 2002, 12:832-839.
31. Mavrakis M., Rikhy R., Lilly M., Lippincott-Schwartz J. Fluorescence imaging techniques for studying Drosophila embryo development. Curr. Protoc. Cell Biol. 2008, 39:4.18.1-4.18.43.
32. McGinnis W., Krumlauf R. Homeobox genes and axial patterning. Cell 1992, 68:283-302.
33. McGinnis N., Ragnhildstveit E., Veraksa A., McGinnis W. A cap 'n' collar protein isoform contains a selective Hox repressor function. Development 1998, 125:4553-4564.
34. Merrill V.K., Diederich R.J., Turner F.R., Kaufman T.C. A genetic and developmental analysis of mutations in labial, a gene necessary for proper head formation in Drosophila melanogaster. Dev. Biol. 1989, 135:376-391.
35. Mohler J. Spatial regulation of segment polarity gene expression in the anterior terminal region of the Drosophila blastoderm embryo. Mech. Dev. 1995, 50:151-161.
36. Mohler J., Mahaffey J.W., Deutsch E., Vani K. Control of Drosophila head segment identity by the bZIP homeotic gene cnc. Development 1995, 121:237-247.
37. Mohler J., Seecoomar M., Agarwal S., Bier E., Hsai J. Activation of knot (kn) specifies the 3-4 intervein region in the Drosophila wing. Development 2000, 127:55-63.
38. Ntini E., Wimmer E.A. Unique establishment of procephalic head segments is supported by the identification of cis-regulatory elements driving segment-specific segment polarity gene expression in Drosophila. Dev. Genes Evol. 2011, 221:1-16.
39. Patel N.H. Developmental evolution: insights from studies of insect segmentation. Science 1994, 266:581-590.
40. Pozzoli O., Bosetti A., Croci L., Consalez G.G., Vetter M.L. Xebf3 is a regulator of neuronal differentiation during primary neurogenesis in Xenopus. Dev. Biol. 2001, 233:495-512.
41. Ramos D.M., Kamal F., Wimmer E.A., Cartwright A.N., Monteiro A. Temporal and spatial control of transgene expression using laser induction of the hsp70 promoter. BMC Dev. Biol. 2006, 6:55.
42. Rehm E.J., Hannibal R.L., Chaw R.C., Vargas-Vila M.A., Patel N.H. In situ hybridization of labeled RNA probes to fixed Parhyale hawaiensis embryos. CSH Protoc. 2009, 10.1101/pdb.prot5130.
43. Ren J., Gao X., Jin C., Zhu M., Wang X., Shaw A., Wen L., Yao X., Xue Y. Systematic study of protein sumoylation: development of a site-specific predictor of SUMOsp 2.0. Proteomics 2009, 9:3409-3412.
44. Rogers B.T., Kaufman T.C. Structure of the insect head as revealed by the EN protein pattern in developing embryos. Development 1996, 122:3419-3432.
45. Rogers B.T., Kaufman T.C. Structure of the insect head in ontogeny and phylogeny: a view from Drosophila. Int. Rev. Cytol. 1997, 174:1-84.
46. Sandmann T., Jakobsen J.S., Furlong E.E. ChIP-on-chip protocol for genome-wide analysis of transcription factor binding in Drosophila melanogaster embryos. Nat. Protoc. 2006, 1:2839-2855.
47. Schmidt-Ott U., Technau G.M. Expression of en and wg in the embryonic head and brain of Drosophila indicates a refolded band of seven segment remnants. Development 1992, 116:11-125.
48. Schmidt-Ott U., González-Gaitán M., Jäckle H., Technau G.M. Number, identity, and sequence of the Drosophila head segments as revealed by neural elements and their deletion patterns in mutants. Proc. Natl. Acad. Sci. U. S. A. 1994, 91:8363-8367.
49. Schmidt-Ott U., Sander K., Technau G. Expression of engrailed in embryos of a beetle and five dipteran species with special reference to the terminal regions. Roux's Arch. Dev. Biol. 1994, 203:298-303.
50. Schöck F., Reischl J., Wimmer E., Taubert H., Purnell B.A., Jäckle H. Phenotypic suppression of empty spiracles is prevented by buttonhead. Nature 2000, 405:351-354.
51. Seecoomar M., Agarwal S., Vani K., Yang G., Mohler J. knot is required for the hypopharyngeal lobe and its derivatives in the Drosophila embryo. Mech. Dev. 2000, 91:209-215.
52. Segal E., Raveh-Sadka T., Schroeder M., Unnerstall U., Gaul U. Predicting expression patterns from regulatory sequence in Drosophila segmentation. Nature 2008, 451:535-540.
53. Smith C.L. Basic confocal microscopy. Curr. Protoc. Cell Biol. 2001, 00. 2C.1.1-2C.1.19.
54. St Johnston D., Nüsslein-Volhard C. The origin of pattern and polarity in the Drosophila embryo. Cell 1992, 68:201-219.
55. Sullivan W., Ashburner M., Scott Hawley R. Preparation of nuclear extracts from Drosophila embryos. Drosophila Protocols 2000, 553-557. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York, USA.
56. Swevers L., Cherbas L., Cherbas P., Iatrou K. Bombyx EcR (BmEcR) and Bombyx USP (BmCF1) combine to form a functional ecdysone receptor. Insect Biochem. Mol. Biol. 1996, 26:217-221.
57. Veraksa A., McGinnis N., Li X., Mohler J., McGinnis W. Cap 'n' collar B cooperates with a small Maf subunit to specify pharyngeal development and suppress deformed homeotic function in the Drosophila head. Development 2000, 127:4023-4037.
58. Vincent A., Blankenship J.T., Wieschaus E. Integration of the head and trunk segmentation systems controls cephalic furrow formation in Drosophila. Development 1997, 124:3747-3754.
59. Wang M.M., Tsai R.Y., Schrader K.A., Reed R.R. Genes encoding components of the olfactory signal transduction cascade contain a DNA binding site that may direct neuronal expression. Mol. Cell. Biol. 1993, 13:5805-5813.
60. Wimmer E.A., Cohen S.M., Jäckle H., Desplan C. Buttonhead does not contribute to a combinatorial code proposed for Drosophila head development. Development 1997, 124:1509-1517.
61. Wodarz A. Extraction and immunoblotting of proteins from embryos. Methods Mol. Biol. 2008, 420:335-345.
62. Zeng C., Pinsonneault J., Gellon G., McGinnis N., McGinnis W. Deformed protein binding sites and cofactor binding sites are required for the function of a small segment-specific regulatory element in Drosophila embryos. EMBO J. 1994, 13:2362-2377.
63. Zhao J. Sumoylation regulates diverse biological processes. Cell. Mol. Life Sci. 2007, 64:3017-3033.