Changing patterns of rotavirus genotypes in Turkey

Current Microbiology

Volumn 63, Issue 6, 2011, Pages 517-522

  Tapisiz, Anil ^a   Karahan, Zeynep Ceren ^a   Çiftçi, Ergin ^a   Ince, Erdal ^a   Doǧru, Ülker ^a  

^a ANKARA UNIVERSITY   (Turkey)

Author keywords

[No Author keywords available]

Indexed keywords

COMPLEMENTARY DNA; DOUBLE STRANDED RNA; ROTAVIRUS VACCINE; VIRUS ANTIGEN;

ARTICLE; CHILD; CONTROLLED STUDY; EUROPE; FECES ANALYSIS; FEMALE; GENE AMPLIFICATION; GENOTYPE; HUMAN; IMMUNOAFFINITY CHROMATOGRAPHY; INCIDENCE; MAJOR CLINICAL STUDY; MALE; MIXED INFECTION; MORTALITY; NONHUMAN; PRESCHOOL CHILD; PRIORITY JOURNAL; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; ROTAVIRUS; ROTAVIRUS INFECTION; SOCIOECONOMICS; TURKEY (REPUBLIC); VIRUS STRAIN;

CHILD, PRESCHOOL; FECES; GASTROENTERITIS; GENOTYPE; HUMANS; INFANT; INFANT, NEWBORN; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA, VIRAL; ROTAVIRUS; ROTAVIRUS INFECTIONS; STATISTICS, NONPARAMETRIC; TURKEY;

HUMAN ROTAVIRUS A; ROTAVIRUS;

EID: 82455216785     PISSN: 03438651     EISSN: 14320991     Source Type: Journal    
DOI: 10.1007/s00284-011-0014-2     Document Type: Article

References (34)

1. S Arista E Vizzi D Ferraro, et al. 1997 Distribution of VP7 serotypes and VP4 genotypes among rotavirus strains recovered from Italian children with diarrhea Arch Virol 142 2065 2071 9413515 10.1007/s007050050224 1:CAS:528:DyaK1cXhsleltg%3D%3D (Pubitemid 27510323)
2. C Aupiais A de Rougemont C Menager, et al. 2009 Severity of acute gastroenteritis in infants infected by G1 or G9 rotaviruses J Clin Virol 46 282 285 19726224 10.1016/j.jcv.2009.07.021 1:CAS:528:DC%2BD1MXht1CmtrvI
3. RF Bishop 1996 Natural history of human rotavirus infections Arch Virol Suppl 12 119 128 9015109 1:STN:280:DyaK2s7mslChsg%3D%3D (Pubitemid 126446220)
4. G Bozdayi B Dogan B Dalgic, et al. 2008 Diversity of human rotavirus G9 among children in Turkey J Med Virol 80 733 740 18297696 10.1002/jmv.21120 1:CAS:528:DC%2BD1cXktFaksbo%3D (Pubitemid 351358574)
5. FA Carvalho-Costa IT Araújo RM Santos de Assis, et al. 2009 Rotavirus genotype distribution after vaccine introduction, Rio de Janeiro, Brazil Emerg Infect Dis 15 95 97 19116062 10.3201/eid1501.071136 1:CAS:528:DC%2BD1MXhvV2gtb0%3D
6. O Cataloluk M Iturriza J Gray 2005 Molecular characterization of rotaviruses circulating in the population in Turkey Epidemiol Infect 133 673 678 16050513 10.1017/S0950268805003882 1:CAS:528:DC%2BD2MXlsF2hsL4%3D (Pubitemid 41015558)
7. M Ceyhan E Alhan N Salman, et al. 2009 Multicenter prospective study on the burden of rotavirus gastroenteritis in Turkey, 2005-2006: a hospital-based study J Infect Dis 200 234 238 10.1086/605056
8. HF Clark DA Lawley A Schaffer, et al. 2004 Assessment of the epidemic potential of a new strain of rotavirus associated with the novel G9 serotype which caused an outbreak in the United States for the first time in the 1995-1996 season J Clin Microbiol 42 1434 1438 15070985 10.1128/JCM.42.4.1434- 1438.2004 (Pubitemid 38500777)
9. U Desselberger J Wolleswinkel-van den Bosch J Mrukowicz 2006 Rotavirus types in Europe and their significance for vaccination Pediatr Infect Dis J 25 30 41 10.1097/01.inf.0000195787.99199.4a (Pubitemid 43361472)
10. ES Bass DA Pappano SG Humiston 2007 Rotavirus Pediatr Rev 28 5 183 191 17473123 10.1542/pir.28-5-183 (Pubitemid 46708591)
11. JR Gentsch AR Laird B Bielfelt, et al. 2005 Serotype diversity and reassortment between human and animal rotavirus strains: implications for rotavirus vaccine programs J Infect Dis 192 146 159 10.1086/431499 (Pubitemid 41193116)
12. JR Gentsch PA Woods M Ramachandran 1996 Review of G and P typing results from a global collection of rotavirus strains: implications for vaccine development J Infect Dis 174 30 36 10.1093/infdis/174.Supplement-1.S30
13. V Gouvea RI Glass P Woods 1990 Polymerase chain reaction amplification and typing of rotavirus nucleic acid from stool specimens J Clin Microbiol 28 276 282 2155916 1:CAS:528:DyaK3cXhvFClsbY%3D (Pubitemid 20050935)
14. V Gouvea N Santos MC Timenetsky 1994 Identification of bovine and porcine rotavirus G types by PCR J Clin Microbiol 32 1338 1340 8051263 1:CAS:528:DyaK2MXhvVShsQ%3D%3D (Pubitemid 24132570)
15. V Gouvea N Santos C Timenetsky Mdo 1994 VP4 typing of bovine and porcine group A rotaviruses by PCR J Clin Microbiol 32 1333 1337 8051262 1:CAS:528:DyaK2MXhvVShsA%3D%3D (Pubitemid 24132569)
16. RG Gurgel AK Bohland SC Vieira, et al. 2009 Incidence of rotavirus and all-cause diarrhea in northeast Brazil following the introduction of a national vaccination program Gastroenterology 137 1970 1975 19632228 10.1053/j.gastro. 2009.07.046
17. TP Ha HJ Kim LJ Saif, et al. 2009 Sequence analysis of unusual P[7]G5 bovine rotavirus strains reveals evidence of interspecies transmission J Clin Microbiol 47 3329 3332 19710284 10.1128/JCM.01583-08
18. V Ibarra G Ruiz-Palacios ML Guerrero, et al. 2003 Unexpected detection of animal VP7 genes among common rotavirus strains isolated from children in Mexico J Clin Microbiol 41 4400 4403 12958276 10.1128/JCM.41.9.4400-4403.2003 (Pubitemid 37099714)
19. A Karadaǧ ZC AçIkgöz Z AvcI, et al. 2005 Childhood diarrhoea in Ankara, Turkey: epidemiological and clinical features of rotavirus-positive versus rotavirus-negative cases Scand J Infect Dis 37 269 275 15804663 10.1080/00365540410020983 (Pubitemid 40542773)
20. P Khamrin N Maneekarn S Peerakome, et al. 2009 Molecular characterization of VP4, VP6, VP7, NSP4, and NSP5/6 genes identifies an unusual G3P[10] human rotavirus strain J Med Virol 81 176 182 19031442 10.1002/jmv.21336
21. P Khamrin N Maneekarn S Peerakome, et al. 2006 Molecular characterization of a rare G3P[3] human rotavirus reassortant strain reveals evidence for multiple human-animal interspecies transmissions J Med Virol 78 986 994 16721863 10.1002/jmv.20651 1:CAS:528:DC%2BD28Xmslyjsrc%3D (Pubitemid 43856709)
22. Z Kurugöl S Geylani Y Karaca, et al. 2003 Rotavirus gastroenteritis among children under five years of age in Izmir, Turkey Turk J Pediatr 4 290 294 (Pubitemid 38120214)
23. B Li HF Clark V Gouvea 1993 Nucleotide sequence of the VP4-encoding gene of an unusual human rotavirus (HCR3) Virology 196 825 830 8396809 10.1006/viro.1993.1540 1:CAS:528:DyaK2cXhvV2l
24. DD Li ZJ Duan Q Zhang, et al. 2008 Molecular characterization of unusual human G5P[6] rotaviruses identified in China J Clin Virol 42 141 148 18304868 10.1016/j.jcv.2007.12.013 1:CAS:528:DC%2BD1cXms1Wms7s%3D
25. AC Linhares T Verstraeten J Wolleswinkel-van den Bosch, et al. 2006 Rotavirus serotype G9 is associated with more-severe disease in Latin America Clin Infect Dis 43 312 314 16804845 10.1086/505493 1:STN:280: DC%2BD28zoslShsQ%3D%3D (Pubitemid 44078902)
26. V Martella V Terio G Del Gaudio, et al. 2003 Detection of the emerging rotavirus G9 serotype at high frequency in Italy J Clin Microbiol 41 3960 3963 12904429 10.1128/JCM.41.8.3960-3963.2003 1:CAS:528:DC%2BD3sXnt1Skurs%3D (Pubitemid 36994752)
27. J Matthijnssens M Ciarlet SM McDonald, et al. 2011 Uniformity of rotavirus strain nomenclature proposed by the Rotavirus Classification Working Group (RCWG) Arch Virol 156 8 1397 1413 21597953 10.1007/s00705-011-1006-z 1:CAS:528:DC%2BC3MXpsVWqsbc%3D
28. J Matthijnssens M Ciarlet M Rahman, et al. 2008 Recommendations for the classification of group A rotaviruses using all 11 genomic RNA segments Arch Virol 153 1621 1629 18604469 10.1007/s00705-008-0155-1 1:CAS:528: DC%2BD1cXos1Wisrc%3D
29. UD Parashar EG Hummelman JS Bresee, et al. 2003 Global illness and deaths caused by rotavirus disease in children Emerg Infect Dis 9 565 572 12737740 10.3201/eid0905.020562 (Pubitemid 36529515)
30. UM Parashar CJ Gibson JS Bresee, et al. 2006 Rotavirus and severe childhood diarrhea Emerg Infect Dis 12 304 306 16494759
31. T Ruuska T Vesikari 1990 Rotavirus disease in Finnish children: use of numerical scores for clinical severity of diarrhoeal episodes Scand J Infect Dis 22 259 267 2371542 10.3109/00365549009027046 1:STN:280:DyaK3czhvFOnsQ%3D%3D
32. Saif LJ, Rosen B, Parwani A (1994) Animal rotaviruses. In: Kapikian AZ (ed) Viral infections of the gastrointestinal tract, 2nd edn. Marcel Dekker, New York, pp 279-367
33. DL Swiatek EA Palombo A Lee, et al. 2010 Characterisation of G8 human rotaviruses in Australian children with gastroenteritis Virus Res 148 1 7 19948195 10.1016/j.virusres.2009.11.013 1:CAS:528:DC%2BC3cXhtlehsrY%3D
34. CJ Williams A Lobanov RG Pebody 2009 Estimated mortality and hospital admission due to rotavirus infection in the WHO European region Epidemiol Infect 137 607 616 19134232 10.1017/S0950268808001714 1:STN:280:DC%2BD1M3jvVKitg%3D%3D