A genomic island provides Acidithiobacillus ferrooxidans ATCC 53993 additional copper resistance: A possible competitive advantage

Applied Microbiology and Biotechnology

Volumn 92, Issue 4, 2011, Pages 761-767

  Orellana, Luis H ^a   Jerez, Carlos A ^a  

^a UNIVERSITY OF CHILE   (Chile)

Author keywords

Acidithiobacillus ferrooxidans 23270; Acidithiobacillus ferrooxidans 53993; Copper resistance; Genomic islands

Indexed keywords

ACIDITHIOBACILLUS FERROOXIDANS; COMPETITIVE ADVANTAGE; COPPER CONCENTRATION; FERROOXIDANS; GENES CODING; GENOMIC ISLANDS; Q-RT-PCR; SIMILAR NUMBERS;

BACTERIA; COMPETITION; ESCHERICHIA COLI; GENES; STRAIN;

COPPER;

ADENOSINE TRIPHOSPHATASE; COPPER SULFATE;

BACTERIUM; CONCENTRATION (COMPOSITION); COPPER; ENZYME ACTIVITY; GENE EXPRESSION; GENOME; GENOMICS; MUTATION; POLYMERASE CHAIN REACTION; SULFATE;

ACIDITHIOBACILLUS FERROOXIDANS; ACIDOPHILE; ARTICLE; BACTERIAL GROWTH; BACTERIAL STRAIN; GENE EXPRESSION; GENOMIC ISLAND; NONHUMAN; SEQUENCE ALIGNMENT; UPREGULATION;

ACIDITHIOBACILLUS; ADENOSINE TRIPHOSPHATASES; BACTERIAL LOAD; COPPER; DRUG RESISTANCE, BACTERIAL; ESCHERICHIA COLI; GENE EXPRESSION; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, BACTERIAL; GENE EXPRESSION REGULATION, ENZYMOLOGIC; GENES, BACTERIAL; GENOMIC ISLANDS; REAL-TIME POLYMERASE CHAIN REACTION;

ACIDITHIOBACILLUS FERROOXIDANS; BACTERIA (MICROORGANISMS); ESCHERICHIA COLI;

EID: 82355185909     PISSN: 01757598     EISSN: 14320614     Source Type: Journal    
DOI: 10.1007/s00253-011-3494-x     Document Type: Article

References (29)

1. S Alvarez CA Jerez 2004 Copper ions stimulate polyphosphate degradation and phosphate efflux in Acidithiobacillus ferrooxidans Appl Environ Microbiol 70 5177 5182 10.1128/AEM.70.9.5177-5182.2004 1:CAS:528:DC%2BD2cXnslSqtb0%3D (Pubitemid 39279587)
2. CL Andersen JJ Jensen TF Ørntoft 2004 Normalization of real-time quantitative RT-PCR data: a model based variance estimation approach to identify genes suited for normalization applied to bladder and colon-cancer data-sets Cancer Res 64 5245 5250 10.1158/0008-5472.CAN-04-0496 1:CAS:528: DC%2BD2cXmtF2mtbg%3D (Pubitemid 39006544)
3. JP Cárdenas J Valdés R Quatrini F Duarte DS Holmes 2010 Lessons from genomes of extremely acidophilic bacteria and archaea with special emphasis on bioleaching microorganisms Appl Microbiol Biotechnol 88 605 620 10.1007/s00253-010-2795-9
4. WM Chen CH Wu EK James JS Chang 2008 Metal biosorption capability of Cupriavidus taiwanensis and its effects on heavy metal removal by nodulation Mimosa pudica J Hazardous Mat 151 364 371 10.1016/j.jhazmat.2007.05.082 1:CAS:528:DC%2BD1cXhtlGgurk%3D (Pubitemid 351179017)
5. AE Darling B Mau NT Perna 2010 Progressive Mauve: multiple genome alignment with gene gain, loss, and rearrangement PLoS One 6 e11147 10.1371/journal.pone.0011147
6. A Das JM Modak KA Natarajan 1998 Surface chemical studies of Thiobacillus ferrooxidans with reference to copper tolerance Antonie Van Leeuwenhoek 73 215 222 10.1023/A:1000858525755 1:CAS:528:DyaK1cXntVaqs7k%3D (Pubitemid 28463837)
7. U Dobrindt B Hochhut U Hentschel J Hacker 2004 Genomic islands in pathogenic and environmental microorganisms Nature Rev Microbiol 2 414 424 10.1038/nrmicro884 1:CAS:528:DC%2BD2cXjt1ejt7g%3D (Pubitemid 39490120)
8. Franke S, Rensing C (2007) Acidophiles. Mechanisms to tolerate metal and acid toxicity. In: Gerday C, Glansdorff N (eds) Physiology and biochemistry of extremophiles. ASM Press, Washington DC, pp 271-278
9. CA Jerez 2008 The use of genomics, proteomics and other OMIC technologies for the global understanding of biomining microorganisms Hydrometallurgy 94 162 169 10.1016/j.hydromet.2008.05.032 1:CAS:528:DC%2BD1cXht1aru7rF
10. JD Keasling 1997 Regulation of intracellular toxic metals and other cations by hydrolysis of polyphosphate Ann NY Acad Sci 829 242 249 10.1111/j.1749-6632.1997.tb48579.x 1:CAS:528:DyaK1cXht1CitL4%3D (Pubitemid 28066075)
11. Y Luo Y Liu C Zhang H Luo H Guan H Liao G Qiu X Liu 2008 Insights into two high homogenous genes involved in copper homeostasis in Acidithiobacillus ferrooxidans Curr Microbiol 57 274 280 10.1007/s00284-008-9189-6 1:CAS:528:DC%2BD1cXhtVWktb3E
12. Magnani D, Solioz M (2007) How bacteria handle copper. In: Nies DH, Silver S (eds) Bacterial transition metal homeostasis. Springer, Heidelberg, pp 259-285
13. CA Navarro LH Orellana C Mauriaca CA Jerez 2009 Transcriptional and functional studies of Acidithiobacillus ferrooxidans genes related to survival in the presence of copper Appl Environ Microbiol 75 6102 6109 10.1128/AEM.00308-09 1:CAS:528:DC%2BD1MXhtlWrtb%2FI
14. A Orell CA Navarro R Arancibia JC Mobarec CA Jerez 2010 Life in blue: copper resistance mechanisms of bacteria and Archaea used in industrial biomining of minerals Biotechnol Adv 28 839 848 10.1016/j.biotechadv.2010.07.003 1:CAS:528:DC%2BC3cXht1WltrzP
15. FW Outten DL Huffman JA Hale TV Ó Halloran 2001 The independent cue and cus system confer copper tolerance during aerobic and anaerobic growth in Escherichia coli J Biol Chem 276 30670 30677 10.1074/jbc.M104122200 1:CAS:528:DC%2BD3MXmsVaqtrg%3D
16. S Puig EM Rees DJ Thiele 2002 The ABCDs of periplasmic copper trafficking Structure 10 1292 1295 10.1016/S0969-2126(02)00863-8 1:CAS:528: DC%2BD38XnvVOrtbs%3D (Pubitemid 35232379)
17. P Ramirez H Toledo N Guiliani CA Jerez 2002 An exported rhodanese-like protein is induced during growth of Acidithiobacillus ferrooxidans in metal sulfides and different sulfur compounds Appl Environ Microbiol 68 1837 1845 10.1128/AEM.68.4.1837-1845.2002 1:CAS:528:DC%2BD38XivFGltbY%3D (Pubitemid 34279992)
18. DE Rawlings 2005 Characteristics and adaptability of iron- and sulfur-oxidizing microorganisms used for the recovery of metals from minerals and their concentrates Microb Cell Fact 4 13 10.1186/1475-2859-4-13 (Pubitemid 41460823)
19. C Rensing G Grass 2003 Escherichia coli mechanism of copper homeostasis in a changing environment FEMS Microbiol Rev 27 197 213 10.1016/S0168-6445(03) 00049-4 1:CAS:528:DC%2BD3sXksVOlt7w%3D (Pubitemid 36694656)
20. T Rohwerder T Gehrke K Kinzler W Sand 2002 Bioleaching review part A: progress in bioleaching: fundamentals and mechanism of bacterial metal sulfide oxidation Appl Microbiol Biotechnol 63 239 248 10.1007/s00253-003-1448-7 (Pubitemid 38130572)
21. S Rozen HJ Skaletsky 2000 Primer3 on the WWW for general users and for biologist programmers Methods Biol Mol 132 365 386 1:CAS:528:DyaK1MXmslKqsbo%3D
22. SL Simmons G DiBartolo VJ Denef DSA Goltsman MP Thelen JF Banfield 2008 Population genomic analysis of strain variation in Leptospirillum group II bacteria involved in acid mine drainage formation PLoS Biol 7 e177 10.1371/journal.pbio.0060177
23. L Valenzuela A Chi S Beard A Orell N Guiliani J Shabanowitz DF Hunt CA Jerez 2006 Genomics, metagenomics and proteomics in biomining microorganisms Biotech Adv 24 197 211 10.1016/j.biotechadv.2005.09.004 1:CAS:528: DC%2BD28XhtVGjs78%3D (Pubitemid 43173509)
24. R Van Houdt S Monchy N Leys M Mergeay 2009 New mobile genetic elements in Cupriavidus metallidurans CH34, their possible roles and occurrence in other bacteria Antonie Van Leeuwenhoek 96 205 226 10.1007/s10482-009-9345-4
25. M Vera F Pagliai N Guiliani CA Jerez 2008 The chemolithoautotroph Acidithiobacillus ferrooxidans can survive under phosphate-limiting conditions by the expression of a C-P lyase operon that allows it to grow on phosphonates Appl Environ Microbiol 74 1829 1835 10.1128/AEM.02101-07 1:CAS:528: DC%2BD1cXjs1agsrg%3D (Pubitemid 351400138)
26. HR Watling 2006 The bioleaching of sulphide minerals with emphasis on copper sulphides-a review Hydrometallurgy 84 81 108 10.1016/j.hydromet.2006.05. 001 1:CAS:528:DC%2BD28XptVSntbk%3D (Pubitemid 44307480)
27. JA Whelan NNB Russell MA Whelan 2003 A method for the absolute quantification of cDNA using real-time PCR J Immunol Methods 278 261 269 10.1016/S0022-1759(03)00223-0 1:CAS:528:DC%2BD3sXmvVOht7w%3D (Pubitemid 37281208)
28. X Wu Q Hu D Hou B Miao X Liu 2010 Differential gene expression in response to copper in Acidithiobacillus ferrooxidans strains possessing dissimilar copper resistance J Gen Appl Microbiol 56 491 498 10.2323/jgam.56.491 1:CAS:528:DC%2BC3MXht12qtL4%3D
29. Y Xue AV Davis G Balakrishnan JP Stasser BM Staehlin P Focia TG Spiro JE Penner-Hahn TV O'Halloran 2008 Cu (I) recognition via cation-π and methionine interactions in CusF Nature Chem Biol 4 107 109 10.1038/nchembio.2007.57 1:CAS:528:DC%2BD1cXnt1Clug%3D%3D