-
1
-
-
79959424627
-
Quantitative, high-resolution proteomics for data-driven systemsbiology
-
Cox J, Mann M, Quantitative, high-resolution proteomics for data-driven systemsbiology, Annu Rev Biochem 80:273-299, 2011.
-
(2011)
Annu Rev Biochem
, vol.80
, pp. 273-299
-
-
Cox, J.1
Mann, M.2
-
2
-
-
77954513767
-
The pros and cons of peptide-centric proteomics
-
Duncan MW, Aebersold R, Caprioli RM, The pros and cons of peptide-centric proteomics,Nat Biotechnol 28(7):659-664, 2010.
-
(2010)
Nat Biotechnol
, vol.28
, Issue.7
, pp. 659-664
-
-
Duncan, M.W.1
Aebersold, R.2
Caprioli, R.M.3
-
3
-
-
54049090766
-
Selected reaction monitoring for quantitativeproteomics: A tutorial
-
Lange V, Picotti P, Domon B, Aebersold R, Selected reaction monitoring for quantitativeproteomics: A tutorial, Mol Syst Biol 4:222, 2008.
-
(2008)
Mol Syst Biol
, vol.4
, pp. 222
-
-
Lange, V.1
Picotti, P.2
Domon, B.3
Aebersold, R.4
-
4
-
-
71049187147
-
Quantification of cardiovascular biomarkers in patient plasmaby targeted mass spectrometry and stable isotope dilution
-
Keshishian H, Addona T, Burgess M, Mani DR, Shi X, Kuhn E, Sabatine MS, GersztenRE, Carr SA, Quantification of cardiovascular biomarkers in patient plasmaby targeted mass spectrometry and stable isotope dilution, Mol Cell Proteomics8(10):2339-2349, 2009.
-
(2009)
Mol Cell Proteomics
, vol.8
, Issue.10
, pp. 2339-2349
-
-
Keshishian, H.1
Addona, T.2
Burgess, M.3
Mani, D.R.4
Shi, X.5
Kuhn, E.6
Sabatine, M.S.7
Gerszten, R.E.8
Carr, S.A.9
-
5
-
-
67449092269
-
Clinical quantitation of prostate-specific antigen biomarker in the lownanogram/milliliter range by conventional bore liquid chromatography-tandem massspectrometry (multiple reaction monitoring) coupling and correlation with ELISAtests
-
Fortin T, Salvador A, Charrier JP, Lenz C, Lacoux X, Morla A, Choquet-KastylevskyG, Lemoine J, Clinical quantitation of prostate-specific antigen biomarker in the lownanogram/milliliter range by conventional bore liquid chromatography-tandem massspectrometry (multiple reaction monitoring) coupling and correlation with ELISAtests, Mol Cell Proteomics 8(5):1006-1015, 2009.
-
(2009)
Mol Cell Proteomics
, vol.8
, Issue.5
, pp. 1006-1015
-
-
Fortin, T.1
Salvador, A.2
Charrier, J.P.3
Lenz, C.4
Lacoux, X.5
Morla, A.6
Choquet-Kastylevsky, G.7
Lemoine, J.8
-
6
-
-
79551600149
-
Comprehensive quantitative analysis of central carbon and amino-acid metabolismin Saccharomyces cerevisiae under multiple conditions by targeted proteomics
-
Costenoble R, Picotti P, Reiter L, Stallmach R, Heinemann M, Sauer U, AebersoldR, Comprehensive quantitative analysis of central carbon and amino-acid metabolismin Saccharomyces cerevisiae under multiple conditions by targeted proteomics, MolSyst Biol 7:464, 2011.
-
(2011)
MolSyst Biol
, vol.7
, pp. 464
-
-
Costenoble, R.1
Picotti, P.2
Reiter, L.3
Stallmach, R.4
Heinemann, M.5
Sauer, U.6
Aebersold, R.7
-
7
-
-
68749094119
-
Full dynamic rangeproteome analysis of S. cerevisiae by targeted proteomics
-
Picotti P, Bodenmiller B, Mueller LN, Domon B, Aebersold R, Full dynamic rangeproteome analysis of S. cerevisiae by targeted proteomics, Cell 138(4):795-806, 2009.
-
(2009)
Cell
, vol.138
, Issue.4
, pp. 795-806
-
-
Picotti, P.1
Bodenmiller, B.2
Mueller, L.N.3
Domon, B.4
Aebersold, R.5
-
8
-
-
79954436497
-
Urinary profile of methylprednisolone acetate metabolites in patients followingintra-articular and intramuscular administration
-
Panusa A, Regazzoni L, Aldini G, Orioli M, Giombini A, Minghetti P, Tranquilli C,Carini M, Urinary profile of methylprednisolone acetate metabolites in patients followingintra-articular and intramuscular administration, Anal Bioanal Chem 400(1):255-267, 2011.
-
(2011)
Anal Bioanal Chem
, vol.400
, Issue.1
, pp. 255-267
-
-
Panusa, A.1
Regazzoni, L.2
Aldini, G.3
Orioli, M.4
Giombini, A.5
Minghetti, P.6
Tranquilli, C.7
Carini, M.8
-
9
-
-
77951770139
-
Group III secreted phospholipase A2 regulates epididymal spermmaturation and fertility in mice
-
Sato H, Taketomi Y, Isogai Y, Miki Y, Yamamoto K, Masuda S, Hosono T, Arata S,Ishikawa Y, Ishii T, Kobayashi T, Nakanishi H, Ikeda K, Taguchi R, Hara S, KudoI, Murakami M, Group III secreted phospholipase A2 regulates epididymal spermmaturation and fertility in mice, J Clin Invest 120(5):1400-1414, 2010.
-
(2010)
J Clin Invest
, vol.120
, Issue.5
, pp. 1400-1414
-
-
Sato, H.1
Taketomi, Y.2
Isogai, Y.3
Miki, Y.4
Yamamoto, K.5
Masuda, S.6
Hosono, T.7
Arata, S.8
Ishikawa, Y.9
Ishii, T.10
Kobayashi, T.11
Nakanishi, H.12
Ikeda, K.13
Taguchi, R.14
Hara, S.15
Kudo, I.16
Murakami, M.17
-
10
-
-
58149492631
-
Targeted analysis of ganglioside and sulfatide molecularspecies by LC/ESI-MS/MS with theoretically expanded multiple reaction monitoring
-
Ikeda K, Shimizu T, Taguchi R, Targeted analysis of ganglioside and sulfatide molecularspecies by LC/ESI-MS/MS with theoretically expanded multiple reaction monitoring,J Lipid Res 49(12):2678-2689, 2008.
-
(2008)
J Lipid Res
, vol.49
, Issue.12
, pp. 2678-2689
-
-
Ikeda, K.1
Shimizu, T.2
Taguchi, R.3
-
11
-
-
79952898680
-
Quantification of dimethyl-ifosfamide and its N- deschloropropylatedmetabolites in mouse plasma by liquid chromatography-tandem mass spectrometry
-
Deroussent A, Rodriguez S, Martelli S, Seck A, Dubus-Daudigeos E, Desmaele D,Vassal G, Paci A, Quantification of dimethyl-ifosfamide and its N-deschloropropylatedmetabolites in mouse plasma by liquid chromatography-tandem mass spectrometry,J Chromatogr B Analyt Technol Biomed Life Sci 879(11-12):743-750, 2011.
-
(2011)
J Chromatogr B Analyt Technol Biomed Life Sci
, vol.879
, Issue.11-12
, pp. 743-750
-
-
Deroussent, A.1
Rodriguez, S.2
Martelli, S.3
Seck, A.4
Dubus-Daudigeos, E.5
Desmaele, D.6
Vassal, G.7
Paci, A.8
-
12
-
-
59849093889
-
Prediction of high-responding peptides fortargeted protein assays by mass spectrometry
-
Fusaro VA, Mani DR, Mesirov JP, Carr SA, Prediction of high-responding peptides fortargeted protein assays by mass spectrometry, Nat Biotechnol 27(2):190-198, 2009.
-
(2009)
Nat Biotechnol
, vol.27
, Issue.2
, pp. 190-198
-
-
Fusaro, V.A.1
Mani, D.R.2
Mesirov, J.P.3
Carr, S.A.4
-
13
-
-
43049090085
-
Targeted quantitative analysis of Streptococcus pyogenes virulence factorsby multiple reaction monitoring
-
Lange V, Malmstrom JA, Didion J, King NL, Johansson BP, Schafer J, RamesederJ, Wong CH, Deutsch EW, Brusniak MY, Buhlmann P, Bjorck L, Domon B,Aebersold R, Targeted quantitative analysis of Streptococcus pyogenes virulence factorsby multiple reaction monitoring, Mol Cell Proteomics 7(8):1489-1500, 2008.
-
(2008)
Mol Cell Proteomics
, vol.7
, Issue.8
, pp. 1489-1500
-
-
Lange, V.1
Malmstrom, J.A.2
Didion, J.3
King, N.L.4
Johansson, B.P.5
Schafer, J.6
RamesederJ Wong, C.H.7
Deutsch, E.W.8
Brusniak, M.Y.9
Buhlmann, P.10
Bjorck, L.11
Domon, B.12
Aebersold, R.13
-
14
-
-
57049144338
-
MRMer, An interactive open source and cross-platform system for data extractionand visualization of multiple reaction monitoring experiments
-
Martin DB, Holzman T, May D, Peterson A, Eastham A, Eng J, McIntosh M,MRMer, An interactive open source and cross-platform system for data extractionand visualization of multiple reaction monitoring experiments, Mol Cell Proteomics7(11):2270-2278, 2008.
-
(2008)
Mol Cell Proteomics
, vol.7
, Issue.11
, pp. 2270-2278
-
-
Martin, D.B.1
Holzman, T.2
May, D.3
Peterson, A.4
Eastham, A.5
Eng, J.6
McIntosh, M.7
-
15
-
-
70349972789
-
MaRiMba: Asoftware application for spectral library-based MRM transition list assembly
-
Sherwood CA, Eastham A, Lee LW, Peterson A, Eng JK, Shteynberg D, Mendoza L,Deutsch EW, Risler J, Tasman N, Aebersold R, Lam H, Martin DB, MaRiMba: Asoftware application for spectral library-based MRM transition list assembly, J ProteomeRes 8(10):4396-4405, 2009.
-
(2009)
J ProteomeRes
, vol.8
, Issue.10
, pp. 4396-4405
-
-
Sherwood, C.A.1
Eastham, A.2
Lee, L.W.3
Peterson, A.4
Eng, J.K.5
Shteynberg, D.6
Mendoza, L.7
Deutsch, E.W.8
Risler, J.9
Tasman, N.10
Aebersold, R.11
Lam, H.12
Martin, D.B.13
-
16
-
-
77951965920
-
Skyline: An open source document editor forcreating and analyzing targeted proteomics experiments
-
MacLean B, Tomazela DM, Shulman N, Chambers M, Finney GL, Frewen B, KernR, Tabb DL, Liebler DC, MacCoss MJ, Skyline: An open source document editor forcreating and analyzing targeted proteomics experiments, Bioinformatics 26(7):966-968, 2010.
-
(2010)
Bioinformatics
, vol.26
, Issue.7
, pp. 966-968
-
-
MacLean, B.1
Tomazela, D.M.2
Shulman, N.3
Chambers, M.4
Finney, G.L.5
Frewen, B.6
KernR Tabb, D.L.7
Liebler, D.C.8
MacCoss, M.J.9
-
17
-
-
79955595074
-
MProphet: Automated data processing and statistical validationfor large-scale SRM experiments
-
Reiter L, Rinner O, Picotti P, Huttenhain R, Beck M, Brusniak MY, HengartnerMO, Aebersold R, mProphet: Automated data processing and statistical validationfor large-scale SRM experiments, Nat Methods, 2011.
-
(2011)
Nat Methods
-
-
Reiter, L.1
Rinner, O.2
Picotti, P.3
Huttenhain, R.4
Beck, M.5
Brusniak, M.Y.6
Hengartner, M.O.7
Aebersold, R.8
-
18
-
-
79952703214
-
ATAQS: A computationalsoftware tool for high throughput transition optimization and validationfor selected reaction monitoring mass spectrometry
-
Brusniak MY, Kwok ST, Christiansen M, Campbell D, Reiter L, Picotti P, KusebauchU, Ramos H, Deutsch EW, Chen J, Moritz RL, Aebersold R, ATAQS: A computationalsoftware tool for high throughput transition optimization and validationfor selected reaction monitoring mass spectrometry, BMC Bioinformatics 12(1):78,2011.
-
(2011)
BMC Bioinformatics
, vol.12
, Issue.1
, pp. 78
-
-
Brusniak, M.Y.1
Kwok, S.T.2
Christiansen, M.3
Campbell, D.4
Reiter, L.5
Picotti, P.6
KusebauchU Ramos, H.7
Deutsch, E.W.8
Chen, J.9
Moritz, R.L.10
Aebersold, R.11
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