Assembly and proteolytic processing of mycobacterial ClpP1 and ClpP2

BMC Biochemistry

Volumn 12, Issue 1, 2011, Pages

  Benaroudj, Nadia ^a   Raynal, Bertrand ^a   Miot, Marika ^b   Ortiz Lombardia, Miguel ^c  

^a INSTITUT PASTEUR   (France)

^b NATIONAL CANCER INSTITUTE   (United States)

^c AIX MARSEILLE UNIVERSITY   (France)

Author keywords

[No Author keywords available]

Indexed keywords

ADENOSINE TRIPHOSPHATASE; ALANINE; ARGININE; BACTERIAL PROTEIN; PEPTIDASE; PROTEIN CLPP1; PROTEIN CLPP2; RECOMBINANT PROTEIN; SERINE; UNCLASSIFIED DRUG; SERINE PROTEINASE;

AMINO ACID SEQUENCE; AMINO TERMINAL SEQUENCE; ARTICLE; BACTERIAL GENE; BACTERIAL GENOME; BACTERIAL VIRULENCE; CLPP1 GENE; CLPP2 GENE; ENZYME ACTIVITY; ESCHERICHIA COLI; MYCOBACTERIUM TUBERCULOSIS; NONHUMAN; PROTEIN ASSEMBLY; PROTEIN DEGRADATION; PROTEIN PROCESSING; PROTEIN PROTEIN INTERACTION; PROTEIN PURIFICATION; PROTEIN SYNTHESIS; CHEMISTRY; ENZYMOLOGY; GENETICS; METABOLISM; MOLECULAR GENETICS; PROTEIN MOTIF; PROTEIN MULTIMERIZATION; SEQUENCE ALIGNMENT;

BACTERIA (MICROORGANISMS); ESCHERICHIA COLI; MYCOBACTERIUM TUBERCULOSIS;

AMINO ACID MOTIFS; AMINO ACID SEQUENCE; BACTERIAL PROTEINS; MOLECULAR SEQUENCE DATA; MYCOBACTERIUM TUBERCULOSIS; PROTEIN MULTIMERIZATION; PROTEOLYSIS; SEQUENCE ALIGNMENT; SERINE ENDOPEPTIDASES;

EID: 82355182598     PISSN: None     EISSN: 14712091     Source Type: Journal    
DOI: 10.1186/1471-2091-12-61     Document Type: Article

References (32)

1. Proteolysis in bacterial regulatory circuits. Gottesman S, Annu Rev Cell Dev Biol 2003 19 565 587 (Pubitemid 37487361)
2. Protein degradation and protection against misfolded or damaged proteins. Goldberg AL, Nature 2003 426 6968 895 899 (Pubitemid 38056882)
3. The structure of ClpP at 2.3 A resolution suggests a model for ATP-dependent proteolysis. Wang J, Hartling JA, Flanagan JM, Cell 1997 91 4 447 456 (Pubitemid 27508234)
4. Activity and specificity of Escherichia coli ClpAP protease in cleaving model peptide substrates. Thompson MW, Maurizi MR, J Biol Chem 1994 269 27 18201 18208 (Pubitemid 24206221)
5. Protease Ti from Escherichia coli requires ATP hydrolysis for protein breakdown but not for hydrolysis of small peptides. Woo KM, Chung WJ, Ha DB, Goldberg AL, Chung CH, J Biol Chem 1989 264 4 2088 2091 (Pubitemid 19057677)
6. Clp chaperone-proteases: structure and function. Kress W, Maglica Z, Weber-Ban E, Res Microbiol 2009 160 9 618 628
7. Tuberculosis. Frieden TR, Sterling TR, Munsiff SS, Watt CJ, Dye C, Lancet 2003 362 9387 887 899 (Pubitemid 37130100)
8. Mechanisms of latency in Mycobacterium tuberculosis. Parrish NM, Dick JD, Bishai WR, Trends Microbiol 1998 6 3 107 112 (Pubitemid 28123330)
9. A phagosome of one's own: a microbial guide to life in the macrophage. Amer AO, Swanson MS, Curr Opin Microbiol 2002 5 1 56 61 (Pubitemid 34118158)
10. Transcriptional Adaptation of Mycobacterium tuberculosis within Macrophages: Insights into the Phagosomal Environment. Schnappinger D, Ehrt S, Voskuil MI, Liu Y, Mangan JA, Monahan IM, Dolganov G, Efron B, Butcher PD, Nathan C, et al. J Exp Med 2003 198 5 693 704 (Pubitemid 37087769)
11. Effects of DksA and ClpP protease on sigma S production and virulence in Salmonella typhimurium. Webb C, Moreno M, Wilmes-Riesenberg M, Curtiss R, Foster JW, Mol Microbiol 1999 34 1 112 123 (Pubitemid 29460490)
12. The ClpP serine protease is essential for the intracellular parasitism and virulence of Listeria monocytogenes. Gaillot O, Pellegrini E, Bregenholt S, Nair S, Berche P, Mol Microbiol 2000 35 6 1286 1294 (Pubitemid 30175506)
13. Global transcriptional analysis of clpP mutations of type 2 Streptococcus pneumoniae and their effects on physiology and virulence. Robertson GT, Ng WL, Foley J, Gilmour R, Winkler ME, J Bacteriol 2002 184 13 3508 3520 (Pubitemid 34625659)
14. Alternative roles of ClpX and ClpP in Staphylococcus aureus stress tolerance and virulence. Frees D, Qazi SN, Hill PJ, Ingmer H, Mol Microbiol 2003 48 6 1565 1578 (Pubitemid 36751062)
15. Helicobacter pylori mutants defective in the clpP ATP-dependant protease and the chaperone clpA display reduced macrophage and murine survival. Loughlin MF, Arandhara V, Okolie C, Aldsworth TG, Jenks PJ, Microb Pathog 2009 46 1 53 57
16. Characterization of a Clp protease gene regulator and the reaeration response in Mycobacterium tuberculosis. Sherrid AM, Rustad TR, Cangelosi GA, Sherman DR, PLoS One 2010 5 7 11622
17. Genes required for mycobacterial growth defined by high density mutagenesis. Sassetti CM, Boyd DH, Rubin EJ, Mol Microbiol 2003 48 1 77 84 (Pubitemid 36411469)
18. ClgR regulation of chaperone and protease systems is essential for Mycobacterium tuberculosis parasitism of the macrophage. Estorninho M, Smith H, Thole J, Harders-Westerveen J, Kierzek A, Butler RE, Neyrolles O, Stewart GR, Microbiology 2010 156 Pt 11 3445 3455
19. Sequence and structure of Clp P, the proteolytic component of the ATP-dependent Clp protease of Escherichia coli. Maurizi MR, Clark WP, Katayama Y, Rudikoff S, Pumphrey J, Bowers B, Gottesman S, J Biol Chem 1990 265 21 12536 12545
20. Clp P represents a unique family of serine proteases. Maurizi MR, Clark WP, Kim SH, Gottesman S, J Biol Chem 1990 265 21 12546 12552
21. Insights into the inter-ring plasticity of caseinolytic proteases from the X-ray structure of Mycobacterium tuberculosis ClpP1. Ingvarsson H, Mate MJ, Hogbom M, Portnoi D, Benaroudj N, Alzari PM, Ortiz-Lombardia M, Unge T, Acta Crystallogr D Biol Crystallogr 2007 63 Pt 2 249 259 (Pubitemid 46197542)
22. ClpP-dependent degradation of PopR allows tightly regulated expression of the clpP3 clpP4 operon in Streptomyces lividans. Viala J, Mazodier P, Mol Microbiol 2002 44 3 633 643 (Pubitemid 34526576)
23. The asymmetry in the mature amino-terminus of ClpP facilitates a local symmetry match in ClpAP and ClpXP complexes. Bewley MC, Graziano V, Griffin K, Flanagan JM, J Struct Biol 2006 153 2 113 128 (Pubitemid 43139692)
24. Turned on for degradation: ATPase-independent degradation by ClpP. Bewley MC, Graziano V, Griffin K, Flanagan JM, J Struct Biol 2009 165 2 118 125
25. The axial channel of the proteasome core particle is gated by the Rpt2 ATPase and controls both substrate entry and product release. Kohler A, Cascio P, Leggett DS, Woo KM, Goldberg AL, Finley D, Mol Cell 2001 7 6 1143 1152 (Pubitemid 32607349)
26. Human mitochondrial ClpP is a stable heptamer that assembles into a tetradecamer in the presence of ClpX. Kang SG, Dimitrova MN, Ortega J, Ginsburg A, Maurizi MR, J Biol Chem 2005 280 42 35424 35432 (Pubitemid 41532732)
27. Structural and theoretical studies indicate that the cylindrical protease ClpP samples extended and compact conformations. Kimber MS, Yu AY, Borg M, Leung E, Chan HS, Houry WA, Structure 2010 18 7 798 808
28. A comparative study of the chymotrypsin-like activity of the rat liver multicatalytic proteinase and the ClpP from Escherichia coli. Arribas J, Castano JG, J Biol Chem 1993 268 28 21165 21171 (Pubitemid 23292303)
29. Atypical caseinolytic protease homolog from Plasmodium falciparum possesses unusual substrate preference and a functional nuclear localization signal. Lin W, Chan M, Sim TS, Parasitol Res 2009 105 6 1715 1722
30. Importance of heptameric ring integrity for activity of Escherichia coli ClpP. Thompson MW, Miller J, Maurizi MR, Kempner E, Eur J Biochem 1998 258 3 923 928 (Pubitemid 29013529)
31. Use of T7 RNA polymerase to direct expression of cloned genes. Studier FW, Rosenberg AH, Dunn JJ, Dubendorff JW, Methods Enzymol 1990 185 60 89 (Pubitemid 20219811)
32. Characterization of the regions involved in the calcium-induced folding of the intrinsically disordered RTX motifs from the Bordetella pertussis adenylate cyclase toxin. Sotomayor Perez AC, Karst JC, Davi M, Guijarro JI, Ladant D, Chenal A, J Mol Biol 2010 397 2 534 549