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Volumn 32, Issue , 2012, Pages 82-88

Enrichment of virtual hits by progressive shape-matching and docking

Author keywords

Docking; Lead hopping; Ligand centric methods; Principal component analysis; Receptor centric methods; Virtual screening

Indexed keywords

LEAD HOPPING; LIGAND-CENTRIC METHODS; PRINCIPAL COMPONENTS; RECEPTOR-CENTRIC METHODS; VIRTUAL SCREENING;

EID: 82255186618     PISSN: 10933263     EISSN: 18734243     Source Type: Journal    
DOI: 10.1016/j.jmgm.2011.10.002     Document Type: Article
Times cited : (7)

References (22)
  • 1
    • 31444441580 scopus 로고    scopus 로고
    • Surrogate docking: Structure-based virtual screening at high throughput speed
    • DOI 10.1007/s10822-005-9002-6
    • S. Yoon, A. Smellie, D. Hartsough, and A. Filikov Surrogate docking: structure-based virtual screening at high throughput speed J. Comput. Aided Mol. Des. 19 2005 483 497 (Pubitemid 43150055)
    • (2005) Journal of Computer-Aided Molecular Design , vol.19 , Issue.7 , pp. 483-497
    • Yoon, S.1    Smellie, A.2    Hartsough, D.3    Filikov, A.4
  • 3
    • 33745199815 scopus 로고    scopus 로고
    • Virtual ligand screening: Strategies, perspectives and limitations
    • G. Klebe Virtual ligand screening: strategies, perspectives and limitations Drug Discov. Today 11 2006 580 594
    • (2006) Drug Discov. Today , vol.11 , pp. 580-594
    • Klebe, G.1
  • 5
    • 8844263008 scopus 로고    scopus 로고
    • Docking and scoring in virtual screening for drug discovery: Methods and applications
    • DOI 10.1038/nrd1549
    • D.B. Kitchen, H. Decornez, J.R. Furr, and J. Bajorath Docking and scoring in virtual screening for drug discovery: methods and applications Nat. Rev. Drug Discov. 3 2004 935 949 (Pubitemid 39529931)
    • (2004) Nature Reviews Drug Discovery , vol.3 , Issue.11 , pp. 935-949
    • Kitchen, D.B.1    Decornez, H.2    Furr, J.R.3    Bajorath, J.4
  • 6
    • 65549168271 scopus 로고    scopus 로고
    • Docking-based virtual screening: Recent developments
    • T. Tuccinardi Docking-based virtual screening: recent developments Comb. Chem. High Throughput Screen. 12 2009 303 314
    • (2009) Comb. Chem. High Throughput Screen. , vol.12 , pp. 303-314
    • Tuccinardi, T.1
  • 7
    • 33749513370 scopus 로고    scopus 로고
    • Scoring functions for protein-ligand docking
    • DOI 10.2174/138920306778559395
    • A.N. Jain Scoring functions for protein-ligand docking Curr. Protein Pept. Sci. 7 2006 407 420 (Pubitemid 44524490)
    • (2006) Current Protein and Peptide Science , vol.7 , Issue.5 , pp. 407-420
    • Jain, A.N.1
  • 9
    • 0033974667 scopus 로고    scopus 로고
    • Accommodating protein flexibility in computational drug design
    • H.A. Carlson, and J.A. McCammon Accommodating protein flexibility in computational drug design Mol. Pharmacol. 57 2000 213 218 (Pubitemid 30084497)
    • (2000) Molecular Pharmacology , vol.57 , Issue.2 , pp. 213-218
    • Carlson, H.A.1    McCammon, J.A.2
  • 10
    • 65349119318 scopus 로고    scopus 로고
    • ScafBank: A public comprehensive Scaffold database to support molecular hopping
    • B.B. Yan, M.Z. Xue, B. Xiong, K. Liu, D.Y. Hu, and J.K. Shen ScafBank: a public comprehensive Scaffold database to support molecular hopping Acta Pharmacol. Sin. 30 2009 251 258
    • (2009) Acta Pharmacol. Sin. , vol.30 , pp. 251-258
    • Yan, B.B.1    Xue, M.Z.2    Xiong, B.3    Liu, K.4    Hu, D.Y.5    Shen, J.K.6
  • 11
    • 62749139691 scopus 로고    scopus 로고
    • SHOP: A method for structure-based fragment and scaffold hopping
    • F. Fontaine, S. Cross, G. Plasencia, M. Pastor, and I. Zamora SHOP: a method for structure-based fragment and scaffold hopping ChemMedChem 4 2009 427 439
    • (2009) ChemMedChem , vol.4 , pp. 427-439
    • Fontaine, F.1    Cross, S.2    Plasencia, G.3    Pastor, M.4    Zamora, I.5
  • 13
    • 70349745554 scopus 로고    scopus 로고
    • Ligand scaffold hopping combining 3D maximal substructure search and molecular similarity
    • F. Quintus, O. Sperandio, J. Grynberg, M. Petitjean, and P. Tuffery Ligand scaffold hopping combining 3D maximal substructure search and molecular similarity BMC Bioinformatics 10 2009 245
    • (2009) BMC Bioinformatics , vol.10 , pp. 245
    • Quintus, F.1    Sperandio, O.2    Grynberg, J.3    Petitjean, M.4    Tuffery, P.5
  • 14
    • 58149105628 scopus 로고    scopus 로고
    • Global Bayesian models for the prioritization of antitubercular agents
    • P. Prathipati, N.L. Ma, and T.H. Keller Global Bayesian models for the prioritization of antitubercular agents J. Chem. Inf. Model. 48 2008 2362 2370
    • (2008) J. Chem. Inf. Model. , vol.48 , pp. 2362-2370
    • Prathipati, P.1    Ma, N.L.2    Keller, T.H.3
  • 15
    • 1542741046 scopus 로고    scopus 로고
    • Identification of a minimal subset of receptor conformations for improved multiple conformation docking and two-step scoring
    • S. Yoon, and W.J. Welsh Identification of a minimal subset of receptor conformations for improved multiple conformation docking and two-step scoring J. Chem. Inf. Comput. Sci. 44 2004 88 96
    • (2004) J. Chem. Inf. Comput. Sci. , vol.44 , pp. 88-96
    • Yoon, S.1    Welsh, W.J.2
  • 16
    • 45749116266 scopus 로고    scopus 로고
    • Application of belief theory to similarity data fusion for use in analog searching and lead hopping
    • S.W. Muchmore, D.A. Debe, J.T. Metz, S.P. Brown, Y.C. Martin, and P.J. Hajduk Application of belief theory to similarity data fusion for use in analog searching and lead hopping J. Chem. Inf. Model. 48 2008 941 948
    • (2008) J. Chem. Inf. Model. , vol.48 , pp. 941-948
    • Muchmore, S.W.1    Debe, D.A.2    Metz, J.T.3    Brown, S.P.4    Martin, Y.C.5    Hajduk, P.J.6
  • 18
    • 72949099925 scopus 로고    scopus 로고
    • Combinatorial library enumeration and lead hopping using comparative interaction fingerprint analysis and classical 2D QSAR methods for seeking novel GABA(A) alpha(3) modulators
    • R.S. Vijayan, I. Bera, M. Prabu, S. Saha, and N. Ghoshal Combinatorial library enumeration and lead hopping using comparative interaction fingerprint analysis and classical 2D QSAR methods for seeking novel GABA(A) alpha(3) modulators J. Chem. Inf. Model. 49 2009 2498 2511
    • (2009) J. Chem. Inf. Model. , vol.49 , pp. 2498-2511
    • Vijayan, R.S.1    Bera, I.2    Prabu, M.3    Saha, S.4    Ghoshal, N.5
  • 19
    • 11144222535 scopus 로고    scopus 로고
    • "Lead hopping". Validation of topomer similarity as a superior predictor of similar biological activities
    • DOI 10.1021/jm049501b
    • R.D. Cramer, R.J. Jilek, S. Guessregen, S.J. Clark, B. Wendt, and R.D. Clark "Lead hopping". Validation of topomer similarity as a superior predictor of similar biological activities J. Med. Chem. 47 2004 6777 6791 (Pubitemid 40053766)
    • (2004) Journal of Medicinal Chemistry , vol.47 , Issue.27 , pp. 6777-6791
    • Cramer, R.D.1    Jilek, R.J.2    Guessregen, S.3    Clark, S.J.4    Wendt, B.5    Clark, R.D.6
  • 20
    • 67650092004 scopus 로고    scopus 로고
    • Identifying novel molecular structures for advanced melanoma by ligand-based virtual screening
    • Z. Wang, Y. Lu, W. Seibel, D.D. Miller, and W. Li Identifying novel molecular structures for advanced melanoma by ligand-based virtual screening J. Chem. Inf. Model. 49 2009 1420 1427
    • (2009) J. Chem. Inf. Model. , vol.49 , pp. 1420-1427
    • Wang, Z.1    Lu, Y.2    Seibel, W.3    Miller, D.D.4    Li, W.5
  • 21
    • 0032197149 scopus 로고    scopus 로고
    • Multivariate analysis of experimental and computational descriptors of molecular lipophilicity
    • R. Mannhold, G. Cruciani, K. Dross, and R. Rekker Multivariate analysis of experimental and computational descriptors of molecular lipophilicity J. Comput. Aided Mol. Des. 12 1998 573 581 (Pubitemid 128512193)
    • (1998) Journal of Computer-Aided Molecular Design , vol.12 , Issue.6 , pp. 573-581
    • Mannhold, R.1    Cruciani, G.2    Dross, K.3    Rekker, R.4


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