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Volumn 3, Issue 9, 2011, Pages

Classification of unknown primary tumors with a data-driven method based on a large microarray reference database

Author keywords

[No Author keywords available]

Indexed keywords

ACCURACY; ARTICLE; CANCER OF UNKNOWN PRIMARY SITE; DIAGNOSTIC TEST ACCURACY STUDY; HUMAN; MICROARRAY ANALYSIS; PRIORITY JOURNAL; REFERENCE DATABASE; TUMOR CLASSIFICATION; VALIDATION STUDY;

EID: 82255162734     PISSN: None     EISSN: 1756994X     Source Type: Journal    
DOI: 10.1186/gm279     Document Type: Article
Times cited : (11)

References (33)
  • 1
    • 18844458018 scopus 로고    scopus 로고
    • Cancer of unknown primary (CUP).
    • 10.1016/j.critrevonc.2004.10.002, 15890271
    • Pavlidis N, Fizazi K. Cancer of unknown primary (CUP). Crit Rev Oncol Hematol 2005, 54:243-250. 10.1016/j.critrevonc.2004.10.002, 15890271.
    • (2005) Crit Rev Oncol Hematol , vol.54 , pp. 243-250
    • Pavlidis, N.1    Fizazi, K.2
  • 2
    • 77955978565 scopus 로고    scopus 로고
    • Atlanta, GA: American Cancer Society, American Cancer Society
    • American Cancer Society Cancer Facts and Figures 2010 2010, Atlanta, GA: American Cancer Society, American Cancer Society.
    • (2010) Cancer Facts and Figures 2010
  • 3
    • 78649340411 scopus 로고    scopus 로고
    • Cancer of unknown primary site: 20 questions to be answered.
    • Pavlidis N, Pentheroudakis G. Cancer of unknown primary site: 20 questions to be answered. Ann Oncol 2010, 21(Suppl 7):vii303-vii307.
    • (2010) Ann Oncol , vol.21 , Issue.SUPPL. 7
    • Pavlidis, N.1    Pentheroudakis, G.2
  • 4
    • 33746028189 scopus 로고    scopus 로고
    • A quantitative reverse transcriptase-polymerase chain reaction assay to identify metastatic carcinoma tissue of origin.
    • 10.2353/jmoldx.2006.050136, 1867609, 16825504
    • Talantov D, Baden J, Jatkoe T, Hahn K, Yu J, Rajpurohit Y, Jiang Y, Choi C, Ross JS, Atkins D, Wang Y, Mazumder A. A quantitative reverse transcriptase-polymerase chain reaction assay to identify metastatic carcinoma tissue of origin. J Mol Diagn 2006, 8:320-329. 10.2353/jmoldx.2006.050136, 1867609, 16825504.
    • (2006) J Mol Diagn , vol.8 , pp. 320-329
    • Talantov, D.1    Baden, J.2    Jatkoe, T.3    Hahn, K.4    Yu, J.5    Rajpurohit, Y.6    Jiang, Y.7    Choi, C.8    Ross, J.S.9    Atkins, D.10    Wang, Y.11    Mazumder, A.12
  • 11
    • 77955434923 scopus 로고    scopus 로고
    • Microarrays in the clinic.
    • 10.1038/nbt0810-810, 20697405
    • Tillinghast GW. Microarrays in the clinic. Nat Biotechnol 2010, 28:810-812. 10.1038/nbt0810-810, 20697405.
    • (2010) Nat Biotechnol , vol.28 , pp. 810-812
    • Tillinghast, G.W.1
  • 16
    • 77149138310 scopus 로고    scopus 로고
    • Identification of tissue of origin in carcinoma of unknown primary with a microarray-based gene expression test.
    • 10.1186/1746-1596-5-3, 2823680, 20205775
    • Monzon FA, Medeiros F, Lyons-Weiler M, Henner WD. Identification of tissue of origin in carcinoma of unknown primary with a microarray-based gene expression test. Diagn Pathol 2010, 5:3. 10.1186/1746-1596-5-3, 2823680, 20205775.
    • (2010) Diagn Pathol , vol.5 , pp. 3
    • Monzon, F.A.1    Medeiros, F.2    Lyons-Weiler, M.3    Henner, W.D.4
  • 20
    • 77955470969 scopus 로고    scopus 로고
    • Predicting the site of origin of tumors by a gene expression signature derived from normal tissues.
    • 10.1038/onc.2010.196, 20514016
    • Staub E, Buhr HJ, Grone J. Predicting the site of origin of tumors by a gene expression signature derived from normal tissues. Oncogene 2010, 29:4485-4492. 10.1038/onc.2010.196, 20514016.
    • (2010) Oncogene , vol.29 , pp. 4485-4492
    • Staub, E.1    Buhr, H.J.2    Grone, J.3
  • 21
    • 0036081355 scopus 로고    scopus 로고
    • Gene Expression Omnibus: NCBI gene expression and hybridization array data repository.
    • 10.1093/nar/30.1.207, 99122, 11752295
    • Edgar R, Domrachev M, Lash AE. Gene Expression Omnibus: NCBI gene expression and hybridization array data repository. Nucleic Acids Res 2002, 30:207-210. 10.1093/nar/30.1.207, 99122, 11752295.
    • (2002) Nucleic Acids Res , vol.30 , pp. 207-210
    • Edgar, R.1    Domrachev, M.2    Lash, A.E.3
  • 22
    • 79953226313 scopus 로고    scopus 로고
    • Alignment of gene expression profiles from test samples against a reference database: New method for context-specific interpretation of microarray data.
    • 10.1186/1756-0381-4-5, 3080808, 21453538
    • Kilpinen SK, Ojala KA, Kallioniemi OP. Alignment of gene expression profiles from test samples against a reference database: New method for context-specific interpretation of microarray data. BioData Min 2011, 4:5. 10.1186/1756-0381-4-5, 3080808, 21453538.
    • (2011) BioData Min , vol.4 , pp. 5
    • Kilpinen, S.K.1    Ojala, K.A.2    Kallioniemi, O.P.3
  • 24
    • 60849113704 scopus 로고    scopus 로고
    • Comparison of Affymetrix data normalization methods using 6,926 experiments across five array generations.
    • 10.1186/1471-2105-10-S1-S24, 2697648, 19534750
    • Autio R, Kilpinen S, Saarela M, Kallioniemi O, Hautaniemi S, Astola J. Comparison of Affymetrix data normalization methods using 6,926 experiments across five array generations. BMC Bioinformatics 2009, 10(Suppl 1):S24. 10.1186/1471-2105-10-S1-S24, 2697648, 19534750.
    • (2009) BMC Bioinformatics , vol.10 , Issue.SUPPL. 1
    • Autio, R.1    Kilpinen, S.2    Saarela, M.3    Kallioniemi, O.4    Hautaniemi, S.5    Astola, J.6
  • 25
    • 35748932852 scopus 로고    scopus 로고
    • Vienna, Austria: R Foundation for Statistical Computing, R Development Core Team
    • R Development Core Team R: A Language and Environment for Statistical Computing 2007, Vienna, Austria: R Foundation for Statistical Computing, R Development Core Team.
    • (2007) R: A Language and Environment for Statistical Computing
  • 26
    • 82255167975 scopus 로고    scopus 로고
    • R AGEP Library
    • Kilpinen S, Ojala K. R AGEP Library. , https://github.com/skilpinen/AGEP
    • Kilpinen, S.1    Ojala, K.2
  • 29
    • 67449105048 scopus 로고    scopus 로고
    • Grade-dependent proteomics characterization of kidney cancer.
    • 10.1074/mcp.M800252-MCP200, 2689781, 19164279
    • Perroud B, Ishimaru T, Borowsky AD, Weiss RH. Grade-dependent proteomics characterization of kidney cancer. Mol Cell Proteomics 2009, 8:971-985. 10.1074/mcp.M800252-MCP200, 2689781, 19164279.
    • (2009) Mol Cell Proteomics , vol.8 , pp. 971-985
    • Perroud, B.1    Ishimaru, T.2    Borowsky, A.D.3    Weiss, R.H.4
  • 31
    • 2642561079 scopus 로고    scopus 로고
    • Are data from different gene expression microarray platforms comparable?
    • 10.1016/j.ygeno.2004.01.004, 15177569
    • Jarvinen AK, Hautaniemi S, Edgren H, Auvinen P, Saarela J, Kallioniemi OP, Monni O. Are data from different gene expression microarray platforms comparable?. Genomics 2004, 83:1164-1168. 10.1016/j.ygeno.2004.01.004, 15177569.
    • (2004) Genomics , vol.83 , pp. 1164-1168
    • Jarvinen, A.K.1    Hautaniemi, S.2    Edgren, H.3    Auvinen, P.4    Saarela, J.5    Kallioniemi, O.P.6    Monni, O.7
  • 32
    • 27144486151 scopus 로고    scopus 로고
    • Experimental comparison and cross-validation of the Affymetrix and Illumina gene expression analysis platforms.
    • 10.1093/nar/gki890, 1258170, 16237126
    • Barnes M, Freudenberg J, Thompson S, Aronow B, Pavlidis P. Experimental comparison and cross-validation of the Affymetrix and Illumina gene expression analysis platforms. Nucleic Acids Res 2005, 33:5914-5923. 10.1093/nar/gki890, 1258170, 16237126.
    • (2005) Nucleic Acids Res , vol.33 , pp. 5914-5923
    • Barnes, M.1    Freudenberg, J.2    Thompson, S.3    Aronow, B.4    Pavlidis, P.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.