Joining forces: Feedback and integration in plant development

Current Opinion in Genetics and Development

Volumn 21, Issue 6, 2011, Pages 799-805

  ten Tusscher, Kirsten ^a   Scheres, Ben ^a  

^a UTRECHT UNIVERSITY   (Netherlands)

Author keywords

[No Author keywords available]

Indexed keywords

AUXIN; TRANSCRIPTION FACTOR;

CELL DIFFERENTIATION; CELL DIVISION; CELL GROWTH; CELL INTERACTION; CELL POPULATION; CELL TRANSPORT; DEVELOPMENTAL BIOLOGY; EPIGENETICS; FEEDBACK SYSTEM; GENE EXPRESSION; GENE REGULATORY NETWORK; GENETIC REGULATION; GROWTH REGULATION; MATHEMATICAL MODEL; MOLECULAR BIOLOGY; MOLECULAR DYNAMICS; MOLECULAR GENETICS; MOLECULAR INTERACTION; MORPHOGENESIS; NONHUMAN; PLANT CELL; PLANT DEVELOPMENT; PLANT GENE; PLANT GENETICS; PLANT MORPHOLOGY; PLANT TISSUE; PRIORITY JOURNAL; PROTEIN TRANSPORT; REVIEW; ROOT DEVELOPMENT; STEM CELL; SYSTEMS BIOLOGY; TISSUE STRUCTURE;

CELL DIFFERENTIATION; COMPUTER SIMULATION; GENE EXPRESSION REGULATION, DEVELOPMENTAL; GENE EXPRESSION REGULATION, PLANT; GENE REGULATORY NETWORKS; MODELS, BIOLOGICAL; MORPHOGENESIS; PLANTS; SYSTEMS BIOLOGY;

EID: 81955160694     PISSN: 0959437X     EISSN: 18790380     Source Type: Journal    
DOI: 10.1016/j.gde.2011.09.008     Document Type: Review

References (33)

1. Sun B., Xu Y., Ng K.H., Ito T. A timing mechanism for stem cell maintenance and differentiation in the Arabidopsis floral meristem. Genes Dev 2009, 23:1791-1804.
2. Carles C.C., Fletcher J.C. The SAND domain protein ULTRAPETALA1 acts as a trithorax group factor to regulate cell fate in plants. Genes Dev 2009, 23:2723-2728.
3. Busch W., Miotk A., Ariel F.D., Zhao Z., Forner J., Daum G., Suzaki T., Schuster C., Schultheiss S.J., Leibfried A., et al. Transcriptional control of a plant stem cell niche. Dev Cell 2010, 18:849-861.
4. Yant L., Mathieu J., Dinh T.T., Ott F., Lanz C., Wollmann H., Chen X., Schmid M. Orchestration of the floral transition and floral development in Arabidopsis by the bifunctional transcription factor APETALA2. Plant Cell 2010, 22:2156-2170.
5. Kaufmann K., Wellmer F., Muiño J.M., Ferrier T., Krajewski P., Meyerowitz E.M., Angenent G.C., Riechmann J.L. Orchestration of floral initiation by APETALA1. Science 2010, 328:85-89.
6. Moreno-Risueno M.A., Van Norman J.M., Moreno A., Zhang J., Ahnert S.E., Benfey P.N. Oscillating gene expression determines competence for periodic Arabidopsis root branching. Science 2010, 329:1306-1311.
7. Traas J., Vermoux T. Plant science. Oscillating roots. Science 2010, 329:1290-1291.
8. De Smet I., Tetsumura T., De Rybel B., Frey N.F., Laplaze L., Casimiro I., Swarup R., Naudts M., Vanneste S., Audenaert D., et al. Auxin-dependent regulation of lateral root positioning in the basal meristem of Arabidopsis. Development 2007, 134:681-690.
9. De Smet I., Lau S., Voss U., Vanneste S., Benjamins R., Rademacher E.H., Schlereth A., De Rybel B., Vassileva V., Grunewald W., et al. Bimodular auxin response controls organogenesis in Arabidopsis. Proc Natl Acad Sci U S A 2010, 107:2705-2710.
10. Okushima Y., Fukaki H., Onoda M., Theologis A., Tasaka M. ARF7 and ARF19 regulate lateral root formation via direct activation of LBD/ASL genes in Arabidopsis. Plant Cell 2007, 19:118-130.
11. Laskowski M., Grieneisen V.A., Hofhuis H., Hove C.A., Hogeweg P., Marée A.F., Scheres B. Root system architecture from coupling cell shape to auxin transport. PLoS Biol 2008, 6:e307.
12. Ditengou F.A., Teale W.D., Kochersperger P., Flittner K.A., Kneuper I., van der Graaff E., Nziengui H., Pinosa F., Li X., Nitschke R., et al. Mechanical induction of lateral root initiation in Arabidopsis thaliana. Proc Natl Acad Sci U S A 2008, 105:18818-18823.
13. Azpeitia E., Benítez M., Vega I., Villarreal C., Alvarez-Buylla E.R. Single-cell and coupled GRN models of cell patterning in the Arabidopsis thaliana root stem cell niche. BMC Syst Biol 2010, 4:134.
14. Carlsbecker A., Lee J.Y., Roberts C.J., Dettmer J., Lehesranta S., Zhou J., Lindgren O., Moreno-Risueno M.A., Vatén A., Thitamadee S., et al. Cell signalling by microRNA165/6 directs gene dose-dependent root cell fate. Nature 2010, 465:316-321.
15. Scheres B. Stem-cell niches: nursery rhymes across kingdoms. Nat Rev Mol Cell Biol 2007, 8:345-354.
16. Bilsborough G.D., Runions A., Barkoulas M., Jenkins H.W., Hasson A., Galinha C., Laufs P., Hay A., Prusinkiewicz P., Tsiantis M. Model for the regulation of Arabidopsis thaliana leaf margin development. Proc Natl Acad Sci U S A 2011, 108:3424-3429.
17. Mitchison G.J. A model for vein formation in higher plants. Proc Roy Soc Lond B 1980, 207:79-109.
18. Feugier F.G., Iwasa Y. How canalization can make loops: a new model of reticulated leaf vascular pattern formation. J Theor Biol 2006, 243:235-244.
19. Jönsson H., Heisler M.G., Shapiro B.E., Meyerowitz E.M., Mjolsness E. An auxin-driven polarized transport model for phyllotaxis. Proc Natl Acad Sci U S A 2006, 103:1633-1638.
20. Smith R.S., Guyomarc'h S., Mandel T., Reinhardt D., Kuhlemeier C., Prusinkiewicz P. A plausible model of phyllotaxis. Proc Natl Acad Sci U S A 2006, 103:1301-1306.
21. Wabnik K., Kleine-Vehn J., Balla J., Sauer M., Naramoto S., Reinöhl V., Merks R.M., Govaerts W., Friml J. Emergence of tissue polarization from synergy of intracellular and extracellular auxin signaling. Mol Syst Biol 2010, 6:447.
22. Heisler M.G., Hamant O., Krupinski P., Uyttewaal M., Ohno C., Jönsson H., Traas J., Meyerowitz E.M. Alignment between PIN1 polarity and microtubule orientation in the shoot apical meristem reveals a tight coupling between morphogenesis and auxin transport. PLoS Biol 2010, 8:e1000516.
23. Blilou I., Xu J., Wildwater M., Willemsen V., Paponov I., Friml J., Heidstra R., Aida M., Palme K., Scheres B. The PIN auxin efflux facilitator network controls growth and patterning in Arabidopsis roots. Nature 2005, 433:39-44.
24. Weijers D., Schlereth A., Ehrismann J.S., Schwank G., Kientz M., Jürgens G. Auxin triggers transient local signaling for cell specification in Arabidopsis embryogenesis. Dev Cell 2006, 10:265-270.
25. Geier F., Lohmann J.U., Gerstung M., Maier A.T., Timmer J., Fleck C. A quantitative and dynamic model for plant stem cell regulation. PLoS One 2008, 3:e3553.
26. Jönsson H., Heisler M., Reddy G.V., Agrawal V., Gor V., Shapiro B.E., Mjolsness E., Meyerowitz E.M. Modeling the organization of the WUSCHEL expression domain in the shoot apical meristem. Bioinformatics 2005, 21(S1):i232-i240.
27. Gordon S.P., Chickarmane V.S., Ohno C., Meyerowitz E.M. Multiple feedback loops through cytokinin signaling control stem cell number within the Arabidopsis shoot meristem. Proc Natl Acad Sci U S A 2009, 106:16529-16534.
28. Besson S., Dumais J. Universal rule for the symmetric division of plant cells. Proc Natl Acad Sci U S A 2011, 108:6294-6299.
29. Corson F., Hamant O., Bohn S., Traas J., Boudaoud A., Couder Y. Turning a plant tissue into a living cell froth through isotropic growth. Proc Natl Acad Sci U S A 2009, 106:8453-8458.
30. Roeder A.H., Chickarmane V., Cunha A., Obara B., Manjunath B.S., Meyerowitz E.M. Variability in the control of cell division underlies sepal epidermal patterning in Arabidopsis thaliana. PLoS Biol 2010, 8:e1000367.
31. Dupuy L., Mackenzie J., Haseloff J. Coordination of plant cell division and expansion in a simple morphogenetic system. Proc Natl Acad Sci U S A 2010, 107:2711-2716.
32. Green A.A., Kennaway J.R., Hanna A.I., Bangham J.A., Coen E. Genetic control of organ shape and tissue polarity. PLoS Biol 2010, 8:e1000537.
33. Reddy V.G., Meyerowitz E.M. Stem-cell homeostasis and growth dynamics can be uncoupled in the Arabidopsis shoot apex. Science 2005, 310:663-667.