Authentication of the proteins expression profiles (PEPs) identification methodology in a bloom of Karenia digitata, the most damaging harmful algal bloom causative agent in the history of Hong Kong

Harmful Algae

Volumn 12, Issue , 2011, Pages 1-10

  Lee, Fred Wang Fat ^a,b   Ho, Kin Chung ^b   Mak, Yun Lam ^a   Lo, Samuel Chun Lap ^a  

^a HONG KONG POLYTECHNIC UNIVERSITY   (Hong Kong)

^b OPEN UNIVERSITY OF HONG KONG   (Hong Kong)

Author keywords

Harmful algal bloom (HAB); Identification; Karenia digitata; MALDI TOF; Protein expression profiles (PEPs)

Indexed keywords

ALGAE; DINOPHYCEAE; KARENIA; KARENIA DIGITATA; KARLODINIUM;

EID: 81455131521     PISSN: 15689883     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.hal.2011.08.007     Document Type: Article

References (19)

1. Adachi M., Sako Y., Ishida Y. Analysis of Alexandrium (dinophyceae) species using sequences of the 5.8S ribosomal DNA and internal transcribed spacer regions. J. Phycol. 1996, 32(3):424-432.
2. D'Onofrio G., Marino D., Bianco L., Busico E., Montresor M. Toward an assessment on the taxonomy of dinoflagellates that produce calcareous cysts (Calciodinelloideae, Dinophyceae): a morphological and molecular approach. J. Phycol. 1999, 35(5):1063-1078.
3. Daugbjerg N., Hansen G., Larsen J., Moestrup O. Phylogeny of some of the major genera of dinoflagellates based on ultrastructure and partial LSU rDNA sequence data, including the erection of three new genera of unarmoured dinoflagellates. Phycologia 2000, 39(4):302-317.
4. de Salas M.F., Laza-Martinez A., Hallegraeff G.M. Novel unarmored dinoflagellates from the toxigenic family Kareniaceae (gymnodiniales): five new species of Karlodinium and one new Takayama from the Australian sector of the Southern Ocean. J. Phycol. 2008, 44(1):241-257.
5. Dieckmann R., Helmuth R., Erhard M., Malorny B. Rapid classification and identification of salmonellae at the species and subspecies levels by whole-cell matrix-assisted laser desorption ionization-time of flight mass spectrometry. Appl. Environ. Microbiol. 2008, 74(24):7767-7778.
6. Dworzanski J.P., Snyder A.P. Classification and identification of bacteria using mass spectrometry-based proteomics. Expert Rev. Proteomics 2005, 2(6):863-878.
7. Fenselau C., Demirev P.A. Characterization of intact microorganisms by MALDI mass spectrometry. Mass Spectrom. Rev. 2001, 20(4):157-171.
8. Hallegraeff G.M. A Review of harmful algal blooms and their apparent global increase. Phycologia 1993, 32(2):79-99.
9. Lee F.W.F., Ho K.C., Lo S.C.L. Rapid identification of dinoflagellates using protein profiling with matrix-assisted laser desorption/ionization mass spectrometry. Harmful Algae 2008, 7(4):551-559.
10. Lee J.H.W., Qu B. Hydrodynamic tracking of the massive spring 1998 red tide in Hong Kong. J. Environ. Eng.: ASCE 2004, 130(5):535-550.
11. Litaker R.W., Vandersea M.W., Kibler S.R., Reece K.S., Stokes N.A., Lutzoni F.M., Yonish B.A., West M.A., Black M.N.D., Tester P.A. Recognizing dinoflagellate species using ITS rDNA sequences. J. Phycol. 2007, 43(2):344-355.
12. Logares R., Shalchian-Tabrizi K., Boltovskoy A., Rengefors K. Extensive dinoflagellate phylogenies indicate infrequent marine-freshwater transitions. Mol. Phylogenet. Evol. 2007, 45(3):887-903.
13. Page R.D. TreeView: an application to display phylogenetic trees on personal computers. Comput. Appl. Biosci. 1996, 12(4):357-358.
14. Scholin C.A., Anderson D.M., Sogin M.L. 2 distinct small-subunit ribosomal-RNA genes in the North-American toxic dinoflagellate Alexandrium fundyense (Dinophyceae). J. Phycol. 1993, 29(2):209-216.
15. Scholin C.A., Herzog M., Sogin M., Anderson D.M. Identification of group-specific and strain-specific genetic-markers for globally distributed Alexandrium (Dinophyceae). 2. Sequence-analysis of a fragment of the LSU ribosomal RNA gene. J. Phycol. 1994, 30(6):999-1011.
16. Scholin C.A., Villac M.C., Buck K.R., Krupp J.M., Powers D.A., Fryxell G.A., Chavez F.P. Ribosomal DNA sequences discriminate among toxic and non-toxic Pseudonitzschia species. Nat. Toxins 1994, 2(4):152-165.
17. Thompson J.D., Gibson T.J., Plewniak F., Jeanmougin F., Higgins D.G. The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 1997, 25(24):4876-4882.
18. Yang Z.B., Hodgkiss I.J. Hong Kong's worst " red tide" - causative factors reflected in a phytoplankton study at Port Shelter station in 1998. Harmful Algae 2004, 3(2):149-161.
19. Yang Z.B., Takayama H., Matsuoka K., Hodgkiss I.J. Karenia digitata sp nov (Gymnodiniales, Dinophyceae), a new harmful algal bloom species from the coastal waters of west Japan and Hong Kong. Phycologia 2000, 39(6):463-470.