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Volumn 6, Issue 11, 2011, Pages

Additive functions in boolean models of gene regulatory network modules

Author keywords

[No Author keywords available]

Indexed keywords

ANIMAL CELL; ARTICLE; CELL CYCLE; CONTROLLED STUDY; EMBRYONIC STEM CELL; GENE FUNCTION; GENE INTERACTION; GENE REGULATORY NETWORK; GENE SEQUENCE; INFORMATION SCIENCE; MOLECULAR DYNAMICS; MOUSE; NONHUMAN; PHASE TRANSITION; YEAST CELL; ANIMAL; BIOLOGICAL MODEL; COMPUTER SIMULATION; CYTOLOGY; GENETICS; METABOLISM; REPRODUCIBILITY; SACCHAROMYCES CEREVISIAE;

EID: 81455125452     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0025110     Document Type: Article
Times cited : (23)

References (33)
  • 1
    • 0014489272 scopus 로고
    • Metabolic stability and epigenesis in randomly constructed genetic nets
    • Kauffman SA, (1969) Metabolic stability and epigenesis in randomly constructed genetic nets. J Theor Biol 22: 437-467.
    • (1969) J Theor Biol , vol.22 , pp. 437-467
    • Kauffman, S.A.1
  • 2
    • 45149138762 scopus 로고
    • Computation at the edge of chaos: Phase transitions and emergent computation
    • Langton CG, (1990) Computation at the edge of chaos: Phase transitions and emergent computation. Physica D 42: 12-37.
    • (1990) Physica D , vol.42 , pp. 12-37
    • Langton, C.G.1
  • 5
    • 0037819447 scopus 로고    scopus 로고
    • Transcription regulation and animal diversity
    • Levine M, Tjian R, (2003) Transcription regulation and animal diversity. Nature 424: 147-151.
    • (2003) Nature , vol.424 , pp. 147-151
    • Levine, M.1    Tjian, R.2
  • 6
    • 7644238181 scopus 로고    scopus 로고
    • Biological robustness
    • /11//print
    • Kitano H, (2004/11//print) Biological robustness. Nat Rev Genet 5: 826-837.
    • (2004) Nat Rev Genet , vol.5 , pp. 826-837
    • Kitano, H.1
  • 8
    • 84956252965 scopus 로고
    • Random networks of automata: a simple annealed approximation
    • Derrida B, Pomeau Y, (1986) Random networks of automata: a simple annealed approximation. Europhysics Letters 1: 45-49.
    • (1986) Europhysics Letters , vol.1 , pp. 45-49
    • Derrida, B.1    Pomeau, Y.2
  • 9
    • 38049045121 scopus 로고    scopus 로고
    • Semi-synchronous activation in scale-free boolean networks
    • Springer-Verlag, Heidelberg, volume 4648 of Lecture Notes in Artificial Intelligence
    • Darabos C, Giacobini M, Tomassini M, (2007) Semi-synchronous activation in scale-free boolean networks. Advances in Artificial Life pp. 976-985 Springer-Verlag, Heidelberg, volume 4648 of Lecture Notes in Artificial Intelligence.
    • (2007) Advances in Artificial Life , pp. 976-985
    • Darabos, C.1    Giacobini, M.2    Tomassini, M.3
  • 11
    • 0141903547 scopus 로고    scopus 로고
    • Boolean dynamics of networks with scale-free topology
    • Aldana M, (2003) Boolean dynamics of networks with scale-free topology. Physica D 185: 45-66.
    • (2003) Physica D , vol.185 , pp. 45-66
    • Aldana, M.1
  • 14
    • 79955765375 scopus 로고    scopus 로고
    • Are cells really operating at the edge of chaos? a case study of two real-life regulatory networks
    • In: et al GK, editors, Berlin, Springer, Lecture Notes in Computer Science
    • Darabos C, Giacobini M, Tomassini M, Provero P, Cunto FD, (2009) Are cells really operating at the edge of chaos? a case study of two real-life regulatory networks. In: et al GK, editors. Advances in Artificial Life, ECAL2009 Berlin Springer, Lecture Notes in Computer Science pp. 89-102.
    • (2009) Advances in Artificial Life, ECAL2009 , pp. 89-102
    • Darabos, C.1    Giacobini, M.2    Tomassini, M.3    Provero, P.4    Cunto, F.D.5
  • 15
    • 33750270802 scopus 로고    scopus 로고
    • Predicting essential components of signal transduction networks: A dynamic model of guard cell abscisic acid signaling
    • Li S, Assmann SM, Albert R, (2006) Predicting essential components of signal transduction networks: A dynamic model of guard cell abscisic acid signaling. PLoS Biol 4: e312.
    • (2006) PLoS Biol , vol.4
    • Li, S.1    Assmann, S.M.2    Albert, R.3
  • 16
    • 44649117905 scopus 로고    scopus 로고
    • Integration of external signaling pathways with the core transcriptional network in embryonic stem cells
    • Chen X, Xu H, Yuan P, Fang F, Huss M, et al. (2008) Integration of external signaling pathways with the core transcriptional network in embryonic stem cells. Cell 133: 1106-1117.
    • (2008) Cell , vol.133 , pp. 1106-1117
    • Chen, X.1    Xu, H.2    Yuan, P.3    Fang, F.4    Huss, M.5
  • 17
    • 62549130808 scopus 로고    scopus 로고
    • Gene expression profiles during early differentiation of mouse embryonic stem cells
    • Mansergh F, Daly C, Hurley A, Wride M, Hunter S, et al. (2009) Gene expression profiles during early differentiation of mouse embryonic stem cells. BMC Developmental Biology 9: 5.
    • (2009) BMC Developmental Biology , vol.9 , pp. 5
    • Mansergh, F.1    Daly, C.2    Hurley, A.3    Wride, M.4    Hunter, S.5
  • 18
    • 34547482341 scopus 로고    scopus 로고
    • Representing perturbed dynamics in biological network models
    • Stoll G, Rougemont J, Naef F, (2007) Representing perturbed dynamics in biological network models. Phys Rev Lett E 76: 011917.
    • (2007) Phys Rev Lett E , vol.76 , pp. 011917
    • Stoll, G.1    Rougemont, J.2    Naef, F.3
  • 20
    • 0033782304 scopus 로고    scopus 로고
    • Modeling transcriptional control in gene networks-methods, recent results, and future directions
    • Smolen P, Baxter D, Byrne J, (2000) Modeling transcriptional control in gene networks-methods, recent results, and future directions. Bulletin of Mathematical Biology 62: 247-292.
    • (2000) Bulletin of Mathematical Biology , vol.62 , pp. 247-292
    • Smolen, P.1    Baxter, D.2    Byrne, J.3
  • 21
    • 0035319006 scopus 로고    scopus 로고
    • Computational studies of gene regulatory networks: in numero molecular biology
    • /04//print
    • Hasty J, McMillen D, Isaacs F, Collins JJ, (2001/04//print) Computational studies of gene regulatory networks: in numero molecular biology. Nat Rev Genet 2: 268-279.
    • (2001) Nat Rev Genet , vol.2 , pp. 268-279
    • Hasty, J.1    McMillen, D.2    Isaacs, F.3    Collins, J.J.4
  • 23
    • 4344706221 scopus 로고    scopus 로고
    • Activities and sensitivities in boolean network models
    • Shmulevich I, Kauffman SA, (2004) Activities and sensitivities in boolean network models. Phys Rev Lett 93: 048701.
    • (2004) Phys Rev Lett , vol.93 , pp. 048701
    • Shmulevich, I.1    Kauffman, S.A.2
  • 24
    • 75649135910 scopus 로고    scopus 로고
    • Deconstructing repression: evolving models of co-repressor action
    • Perissi V, Jepsen K, Glass CK, Rosenfeld MG, (2010) Deconstructing repression: evolving models of co-repressor action. Nat Rev Genet 11: 109-123.
    • (2010) Nat Rev Genet , vol.11 , pp. 109-123
    • Perissi, V.1    Jepsen, K.2    Glass, C.K.3    Rosenfeld, M.G.4
  • 25
    • 34249079154 scopus 로고    scopus 로고
    • Network motifs: theory and experimental approaches
    • Alon U, (2007) Network motifs: theory and experimental approaches. Nat Rev Genet 8: 450-461.
    • (2007) Nat Rev Genet , vol.8 , pp. 450-461
    • Alon, U.1
  • 27
    • 0036740483 scopus 로고    scopus 로고
    • Identification of regulatory elements using a feature selection method
    • Keles S, van der Laan M, Eisen MB, (2002) Identification of regulatory elements using a feature selection method. Bioinformatics 18: 1167-1175.
    • (2002) Bioinformatics , vol.18 , pp. 1167-1175
    • Keles, S.1    van der Laan, M.2    Eisen, M.B.3
  • 29
    • 0035135420 scopus 로고    scopus 로고
    • Regulatory element detection using correlation with expression
    • Bussemaker HJ, Li H, Siggia ED, (2001) Regulatory element detection using correlation with expression. Nature genetics 27: 167-171.
    • (2001) Nature Genetics , vol.27 , pp. 167-171
    • Bussemaker, H.J.1    Li, H.2    Siggia, E.D.3
  • 32
    • 0009608419 scopus 로고
    • Genomic regulation modeled as a network with basins of attraction
    • In: et al PA, editors, World Scientific
    • Wuensche A, (1989) Genomic regulation modeled as a network with basins of attraction. In: et al PA, editors. Pacific Symposium on Biocomputing World Scientific pp. 89-102.
    • (1989) Pacific Symposium on Biocomputing , pp. 89-102
    • Wuensche, A.1
  • 33
    • 0003737454 scopus 로고    scopus 로고
    • New York, Oxford University Press
    • Kauffman SA, (2000) Investigations New York Oxford University Press.
    • (2000) Investigations
    • Kauffman, S.A.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.