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Volumn 13, Issue 11, 2011, Pages 1019-1025

Detection of somatic copy number alterations in cancerusing targeted exome capture sequencing

Author keywords

[No Author keywords available]

Indexed keywords

AR GENE; ARTICLE; CASTRATION RESISTANT PROSTATE CANCER; COMPARATIVE GENOMIC HYBRIDIZATION; CONTROLLED STUDY; COPY NUMBER ALTERATION; GENE LOSS; GENE SEQUENCE; GENETIC GAIN; HUMAN; HUMAN TISSUE; PRIORITY JOURNAL; PTEN GENE; SOMATIC MUTATION; TARGETED EXOME CAPTURE SEQUENCING; TUMOR GENE;

EID: 81355164570     PISSN: 15228002     EISSN: 14765586     Source Type: Journal    
DOI: 10.1593/neo.111252     Document Type: Article
Times cited : (72)

References (30)
  • 4
    • 34347339520 scopus 로고    scopus 로고
    • Methods and strategies for analyzing copy number variation using DNA microarrays
    • Carter NP (2007). Methods and strategies for analyzing copy number variation using DNA microarrays. Nat Genet 39, S16-S21.
    • (2007) Nat Genet , vol.39
    • Carter, N.P.1
  • 6
    • 52949093111 scopus 로고    scopus 로고
    • Systematic assessment of copy number variant detection via genome-wide SNP genotyping
    • Cooper GM, Zerr T, Kidd JM, Eichler EE, and Nickerson DA (2008). Systematic assessment of copy number variant detection via genome-wide SNP genotyping. Nat Genet 40, 1199-1203.
    • (2008) Nat Genet , vol.40 , pp. 1199-1203
    • Cooper, G.M.1    Zerr, T.2    Kidd, J.M.3    Eichler, E.E.4    Nickerson, D.A.5
  • 8
    • 29444450702 scopus 로고    scopus 로고
    • Common deletions and SNPs are in linkage disequilibrium in the human genome
    • Hinds DA, Kloek AP, Jen M, Chen X, and Frazer KA (2006). Common deletions and SNPs are in linkage disequilibrium in the human genome. Nat Genet 38, 82-85.
    • (2006) Nat Genet , vol.38 , pp. 82-85
    • Hinds, D.A.1    Kloek, A.P.2    Jen, M.3    Chen, X.4    Frazer, K.A.5
  • 12
    • 79953855362 scopus 로고    scopus 로고
    • Accurate and exact CNV identification from targeted high-throughput sequence data
    • Nord AS, Lee M, King MC, and Walsh T (2011). Accurate and exact CNV identification from targeted high-throughput sequence data. BMC Genomics 12, 184.
    • (2011) BMC Genomics , vol.12 , pp. 184
    • Nord, A.S.1    Lee, M.2    King, M.C.3    Walsh, T.4
  • 13
    • 79961202047 scopus 로고    scopus 로고
    • Detecting common copy number variants in high-throughput sequencing data by using JointSLM algorithm
    • Magi A, Benelli M, Yoon S, Roviello F, and Torricelli F (2011). Detecting common copy number variants in high-throughput sequencing data by using JointSLM algorithm. Nucleic Acids Res 39, e65.
    • (2011) Nucleic Acids Res , vol.e65 , pp. 39
    • Magi, A.1    Benelli, M.2    Yoon, S.3    Roviello, F.4    Torricelli, F.5
  • 14
    • 77955635446 scopus 로고    scopus 로고
    • rSW-seq: Algorithm for detection of copy number alterations in deep sequencing data
    • Kim TM, Luquette LJ, Xi R, and Park PJ (2010). rSW-seq: algorithm for detection of copy number alterations in deep sequencing data. BMC Bioinformatics 11, 432.
    • (2010) BMC Bioinformatics , vol.11 , pp. 432
    • Kim, T.M.1    Luquette, L.J.2    Xi, R.3    Park, P.J.4
  • 15
    • 78649309503 scopus 로고    scopus 로고
    • Detecting copy number variation with mated short reads
    • Medvedev P, Fiume M, Dzamba M, Smith T, and Brudno M (2010). Detecting copy number variation with mated short reads. Genome Res 20, 1613-1622.
    • (2010) Genome Res , vol.20 , pp. 1613-1622
    • Medvedev, P.1    Fiume, M.2    Dzamba, M.3    Smith, T.4    Brudno, M.5
  • 18
    • 79953176952 scopus 로고    scopus 로고
    • Exome sequencing identifies somatic mutations of DNA methyltransferase gene DNMT3A in acute monocytic leukemia
    • Yan XJ, Xu J, Gu ZH, Pan CM, Lu G, Shen Y, Shi JY, Zhu YM, Tang L, Zhang XW, et al. (2011). Exome sequencing identifies somatic mutations of DNA methyltransferase gene DNMT3A in acute monocytic leukemia. Nat Genet 43, 309-315.
    • (2011) Nat Genet , vol.43 , pp. 309-315
    • Yan, X.J.1    Xu, J.2    Gu, Z.H.3    Pan, C.M.4    Lu, G.5    Shen, Y.6    Shi, J.Y.7    Zhu, Y.M.8    Tang, L.9    Zhang, X.W.10
  • 20
    • 78649700287 scopus 로고    scopus 로고
    • Frequent mutation of BAP1 in metastasizing uveal melanomas
    • Harbour JW, Onken MD, Roberson ED, Duan S, Cao L, Worley LA, Council ML, Matatall KA, Helms C, and Bowcock AM (2010). Frequent mutation of BAP1 in metastasizing uveal melanomas. Science 330, 1410-1413.
    • (2010) Science , vol.330 , pp. 1410-1413
    • Harbour, J.W.1
  • 22
    • 79959838081 scopus 로고    scopus 로고
    • Integrated genomic analyses of ovarian carcinoma
    • The Cancer Genome Atlas Research Network
    • The Cancer Genome Atlas Research Network. (2011). Integrated genomic analyses of ovarian carcinoma. Nature 474, 609-615.
    • (2011) Nature , vol.474 , pp. 609-615
  • 26
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memoryefficient alignment of short DNA sequences to the human genome
    • Langmead B, Trapnell C, Pop M, and Salzberg SL (2009). Ultrafast and memoryefficient alignment of short DNA sequences to the human genome. Genome Biol 10, R25.
    • (2009) Genome Biol , vol.10
    • Langmead, B.1    Trapnell, C.2    Pop, M.3    Salzberg, S.L.4
  • 27
    • 3543105225 scopus 로고    scopus 로고
    • Circular binary segmentation for the analysis of array-based DNA copy number data
    • Olshen AB, Venkatraman ES, Lucito R, and Wigler M (2004). Circular binary segmentation for the analysis of array-based DNA copy number data. Biostatistics 5, 557-572.
    • (2004) Biostatistics , vol.5 , pp. 557-572
    • Olshen, A.B.1    Venkatraman, E.S.2    Lucito, R.3    Wigler, M.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.