메뉴 건너뛰기




Volumn 11, Issue 8, 2011, Pages 1399-1407

Temporal changes in abundance and composition of ammonia-oxidizing bacterial and archaeal communities in a drained peat soil in relation to N2O emissions

Author keywords

Ammonia oxidizers; AOA; AOB; Nitrous oxide; Organic soil

Indexed keywords

ABUNDANCE; AMMONIA; BACTERIUM; BOREAL FOREST; COMMUNITY COMPOSITION; GREENHOUSE GAS; INHIBITION; NITROUS OXIDE; ORGANIC SOIL; PEAT SOIL; POLYMERASE CHAIN REACTION; PROKARYOTE; REAL TIME; SAMPLING; SOIL MICROORGANISM; SPATIOTEMPORAL ANALYSIS; TERRESTRIAL ENVIRONMENT;

EID: 81355147448     PISSN: 14390108     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11368-011-0413-9     Document Type: Article
Times cited : (25)

References (60)
  • 1
    • 0002154022 scopus 로고    scopus 로고
    • A new method for non-parametric multivariate analysis of variance
    • Anderson MJ (2001) A new method for non-parametric multivariate analysis of variance. Austral Ecol 26: 32-46.
    • (2001) Austral Ecol , vol.26 , pp. 32-46
    • Anderson, M.J.1
  • 2
    • 0032936017 scopus 로고    scopus 로고
    • Seasonal changes in soil microbial communities along a fertility gradient of temperate grasslands
    • Bardgett RD, Lovell RD, Hobbs PJ, Jarvis SC (1999) Seasonal changes in soil microbial communities along a fertility gradient of temperate grasslands. Soil Biol Biochem 31: 1021-1030.
    • (1999) Soil Biol Biochem , vol.31 , pp. 1021-1030
    • Bardgett, R.D.1    Lovell, R.D.2    Hobbs, P.J.3    Jarvis, S.C.4
  • 3
    • 0018852895 scopus 로고
    • Specific inhibition of nitrite oxidation by chlorate and its use in assessing nitrification in soils and sediments
    • Belser LW, Mays EL (1980) Specific inhibition of nitrite oxidation by chlorate and its use in assessing nitrification in soils and sediments. Appl Environ Microbiol 39: 505-510.
    • (1980) Appl Environ Microbiol , vol.39 , pp. 505-510
    • Belser, L.W.1    Mays, E.L.2
  • 4
    • 0000690459 scopus 로고
    • Ammonium oxidizer numbers, potential and actual oxidation rates in two Swedish arable soils
    • Berg P, Rosswall T (1985) Ammonium oxidizer numbers, potential and actual oxidation rates in two Swedish arable soils. Biol Fertil Soils 1: 131-140.
    • (1985) Biol Fertil Soils , vol.1 , pp. 131-140
    • Berg, P.1    Rosswall, T.2
  • 5
    • 0002022082 scopus 로고
    • Seasonal variations in abundance and activity of nitrifiers in four arable cropping systems
    • Berg P, Rosswall T (1987) Seasonal variations in abundance and activity of nitrifiers in four arable cropping systems. Microb Ecol 13: 75-87.
    • (1987) Microb Ecol , vol.13 , pp. 75-87
    • Berg, P.1    Rosswall, T.2
  • 6
    • 16544377774 scopus 로고    scopus 로고
    • The relationship between redox potential and nitrification under different sequences of crop rotations
    • Bohrerova Z, Stralkova R, Podesvova J, Bohrer G, Pokorny E (2004) The relationship between redox potential and nitrification under different sequences of crop rotations. Soil Till Res 77: 25-33.
    • (2004) Soil Till Res , vol.77 , pp. 25-33
    • Bohrerova, Z.1    Stralkova, R.2    Podesvova, J.3    Bohrer, G.4    Pokorny, E.5
  • 7
    • 52949087143 scopus 로고    scopus 로고
    • Community composition of ammonia-oxidizing bacteria and archaea in soils under stands of red alder and Douglas fir in Oregon
    • Boyle-Yarwood SA, Bottomley PJ, Myrold DD (2008) Community composition of ammonia-oxidizing bacteria and archaea in soils under stands of red alder and Douglas fir in Oregon. Environ Microbiol 10: 2956-2965.
    • (2008) Environ Microbiol , vol.10 , pp. 2956-2965
    • Boyle-Yarwood, S.A.1    Bottomley, P.J.2    Myrold, D.D.3
  • 8
    • 0019424447 scopus 로고
    • Effect of anhydrous ammonia fertilization on emission of nitrous oxide from soils
    • Bremner JM, Breitenbeck GA, Blackmer AM (1981) Effect of anhydrous ammonia fertilization on emission of nitrous oxide from soils. J Environ Qual 10: 77-80.
    • (1981) J Environ Qual , vol.10 , pp. 77-80
    • Bremner, J.M.1    Breitenbeck, G.A.2    Blackmer, A.M.3
  • 9
    • 35948999268 scopus 로고    scopus 로고
    • Ammonia oxidation and ammonia-oxidizing bacteria and archaea from estuaries with differing histories of hypoxia
    • Caffrey JM, Bano N, Kalanetra K, Hollibaugh JT (2007) Ammonia oxidation and ammonia-oxidizing bacteria and archaea from estuaries with differing histories of hypoxia. ISME J 1: 660-662.
    • (2007) ISME J , vol.1 , pp. 660-662
    • Caffrey, J.M.1    Bano, N.2    Kalanetra, K.3    Hollibaugh, J.T.4
  • 11
    • 77953702908 scopus 로고    scopus 로고
    • Nitrous oxide emissions from grazed grassland as affected by a nitrification inhibitor, dicyandiamide, and relationships with ammonia-oxidizing bacteria and archaea
    • Di HJ, Cameron KC, Sherlock RR, Shen JP, He JZ, Winefield CS (2010a) Nitrous oxide emissions from grazed grassland as affected by a nitrification inhibitor, dicyandiamide, and relationships with ammonia-oxidizing bacteria and archaea. J Soils Sediments 10: 943-954.
    • (2010) J Soils Sediments , vol.10 , pp. 943-954
    • Di, H.J.1    Cameron, K.C.2    Sherlock, R.R.3    Shen, J.P.4    He, J.Z.5    Winefield, C.S.6
  • 14
    • 0026271247 scopus 로고
    • Northern peatlands: role in the carbon cycle and probable responses to climatic warming
    • Gorham E (1991) Northern peatlands: role in the carbon cycle and probable responses to climatic warming. Ecol Appl 1: 182-195.
    • (1991) Ecol Appl , vol.1 , pp. 182-195
    • Gorham, E.1
  • 15
    • 67349287510 scopus 로고    scopus 로고
    • Relationship between N-cycling communities and ecosystem functioning in a 50-year-old fertilization experiment
    • Hallin S, Jones CM, Schloter M, Philippot L (2009) Relationship between N-cycling communities and ecosystem functioning in a 50-year-old fertilization experiment. ISME J 3: 597-605.
    • (2009) ISME J , vol.3 , pp. 597-605
    • Hallin, S.1    Jones, C.M.2    Schloter, M.3    Philippot, L.4
  • 16
    • 34547686149 scopus 로고    scopus 로고
    • Quantitative analyses of the abundance and composition of ammonia-oxidizing bacteria and ammonia-oxidizing archaea of a Chinese upland red soil under long-term fertilization practices
    • He JZ, Shen JP, Zhang LM, Zhu YG, Zheng YM, Xu MG, Di H (2007) Quantitative analyses of the abundance and composition of ammonia-oxidizing bacteria and ammonia-oxidizing archaea of a Chinese upland red soil under long-term fertilization practices. Environ Microbiol 9: 2364-2374.
    • (2007) Environ Microbiol , vol.9 , pp. 2364-2374
    • He, J.Z.1    Shen, J.P.2    Zhang, L.M.3    Zhu, Y.G.4    Zheng, Y.M.5    Xu, M.G.6    Di, H.7
  • 17
    • 5744246431 scopus 로고    scopus 로고
    • Quantification of ammonia-oxidizing bacteria in limed and non-limed acidic coniferous forest soil using real-time PCR
    • Hermansson A, Bäckman JSK, Svensson BH, Lindgren P-E (2004) Quantification of ammonia-oxidizing bacteria in limed and non-limed acidic coniferous forest soil using real-time PCR. Soil Biol Biochem 36: 1935-1941.
    • (2004) Soil Biol Biochem , vol.36 , pp. 1935-1941
    • Hermansson, A.1    Bäckman, J.S.K.2    Svensson, B.H.3    Lindgren, P.-E.4
  • 18
    • 33645762226 scopus 로고
    • A sharper Bonferroni procedure for multiple tests of significance
    • Hochberg Y (1988) A sharper Bonferroni procedure for multiple tests of significance. Biomet 75: 800-802.
    • (1988) Biomet , vol.75 , pp. 800-802
    • Hochberg, Y.1
  • 19
    • 78649337295 scopus 로고    scopus 로고
    • Ammonium supply rate influences archaeal and bacterial ammonia oxidisers in a wetland soil vertical profile
    • Höfferle S, Nicil G, Pal L, Hacin J, Prosser JI, Mandic-Mulec I (2010) Ammonium supply rate influences archaeal and bacterial ammonia oxidisers in a wetland soil vertical profile. FEMS Microbiol Ecol 74: 302-315.
    • (2010) FEMS Microbiol Ecol , vol.74 , pp. 302-315
    • Höfferle, S.1    Nicil, G.2    Pal, L.3    Hacin, J.4    Prosser, J.I.5    Mandic-Mulec, I.6
  • 20
    • 67649939034 scopus 로고    scopus 로고
    • Bacteria rather than Archaea dominate microbial ammonia oxidation in an agricultural soil
    • Jia Z, Conrad R (2009) Bacteria rather than Archaea dominate microbial ammonia oxidation in an agricultural soil. Environ Microbiol 11: 1658-1671.
    • (2009) Environ Microbiol , vol.11 , pp. 1658-1671
    • Jia, Z.1    Conrad, R.2
  • 22
    • 0000041158 scopus 로고
    • A new perfusion system for the measurement and characterization of potential rates of soil nitrification
    • Killham K (1987) A new perfusion system for the measurement and characterization of potential rates of soil nitrification. Plant Soil 97: 267-272.
    • (1987) Plant Soil , vol.97 , pp. 267-272
    • Killham, K.1
  • 24
    • 0034775280 scopus 로고    scopus 로고
    • Ammonia-oxidizing bacteria: a model for molecular microbial ecology
    • Kowalchuk GA, Stephen JR (2001) Ammonia-oxidizing bacteria: a model for molecular microbial ecology. Annu Rev Microbiol 55: 485-529.
    • (2001) Annu Rev Microbiol , vol.55 , pp. 485-529
    • Kowalchuk, G.A.1    Stephen, J.R.2
  • 25
    • 0033830927 scopus 로고    scopus 로고
    • Temporal and spatial variation of nitrogen transformations in a coniferous forest soil
    • Laverman AM, Zoomer HR, van Verseveld HW, Verhoef HA (2000) Temporal and spatial variation of nitrogen transformations in a coniferous forest soil. Soil Biol Biochem 32: 1661-1670.
    • (2000) Soil Biol Biochem , vol.32 , pp. 1661-1670
    • Laverman, A.M.1    Zoomer, H.R.2    van Verseveld, H.W.3    Verhoef, H.A.4
  • 28
    • 2442709377 scopus 로고    scopus 로고
    • Seasonal changes in an alpine soil bacterial community in the Colorado Rocky Mountains
    • Lipson DA, Schmidt SK (2004) Seasonal changes in an alpine soil bacterial community in the Colorado Rocky Mountains. Appl Environ Microbiol 70: 2867-2879.
    • (2004) Appl Environ Microbiol , vol.70 , pp. 2867-2879
    • Lipson, D.A.1    Schmidt, S.K.2
  • 30
    • 70350052417 scopus 로고    scopus 로고
    • Ammonia oxidation kinetics determine niche separation of nitrifying Archaea and Bacteria
    • Martens-Habbena W, Berube PM, Urakawa H, de la Torre JR, Stahl DA (2009) Ammonia oxidation kinetics determine niche separation of nitrifying Archaea and Bacteria. Nature 461: 976-U234.
    • (2009) Nature , vol.461 , pp. 234-976
    • Martens-Habbena, W.1    Berube, P.M.2    Urakawa, H.3    de la Torre, J.R.4    Stahl, D.A.5
  • 31
    • 0000171630 scopus 로고
    • Nitrous oxide emission associated with autotrophic ammonium oxidation in acid coniferous forest soil
    • Martikainen PJ (1985) Nitrous oxide emission associated with autotrophic ammonium oxidation in acid coniferous forest soil. Appl Environ Microbiol 50: 1519-1525.
    • (1985) Appl Environ Microbiol , vol.50 , pp. 1519-1525
    • Martikainen, P.J.1
  • 32
    • 0027796114 scopus 로고
    • Nitrous oxide production and nitrification in acidic soil from a Dutch coniferous forest
    • Martikainen PJ, de Boer W (1993) Nitrous oxide production and nitrification in acidic soil from a Dutch coniferous forest. Soil Biol Biochem 25: 343-347.
    • (1993) Soil Biol Biochem , vol.25 , pp. 343-347
    • Martikainen, P.J.1    de Boer, W.2
  • 34
    • 34248562051 scopus 로고    scopus 로고
    • 2O product ratio of nitrification and its dependence on long-term changes in soil pH
    • 2O product ratio of nitrification and its dependence on long-term changes in soil pH. Soil Biol Biochem 39: 2048-2057.
    • (2007) Soil Biol Biochem , vol.39 , pp. 2048-2057
    • Mørkved, P.T.1    Dörsch, P.2    Bakken, L.R.3
  • 35
    • 52949137846 scopus 로고    scopus 로고
    • The influence of soil pH on the diversity, abundance and transcriptional activity of ammonia oxidizing archaea and bacteria
    • Nicol GW, Leininger S, Schleper C, Prosser JI (2008) The influence of soil pH on the diversity, abundance and transcriptional activity of ammonia oxidizing archaea and bacteria. Environ Microbiol 10: 2966-2978.
    • (2008) Environ Microbiol , vol.10 , pp. 2966-2978
    • Nicol, G.W.1    Leininger, S.2    Schleper, C.3    Prosser, J.I.4
  • 36
    • 0029477732 scopus 로고
    • Emissions of CH4, N2O and CO2 from a virgin fen and a fen drained for grassland in Finland
    • Nykanen H, Alm J, Lang K, Silvola J, Martikainen PJ (1995) Emissions of CH4, N2O and CO2 from a virgin fen and a fen drained for grassland in Finland. J Biogeography 22: 351-357.
    • (1995) J Biogeography , vol.22 , pp. 351-357
    • Nykanen, H.1    Alm, J.2    Lang, K.3    Silvola, J.4    Martikainen, P.J.5
  • 37
    • 69949127231 scopus 로고    scopus 로고
    • Growth of ammonia-oxidizing archaea in soil microcosms is inhibited by acetylene
    • Offre PR, Prosser JI, Nicol GW (2009) Growth of ammonia-oxidizing archaea in soil microcosms is inhibited by acetylene. FEMS Microbiol Ecol 70: 99-108.
    • (2009) FEMS Microbiol Ecol , vol.70 , pp. 99-108
    • Offre, P.R.1    Prosser, J.I.2    Nicol, G.W.3
  • 40
    • 70349694213 scopus 로고    scopus 로고
    • 2O): the dominant ozone-depleting substance emitted in the 21st century
    • 2O): the dominant ozone-depleting substance emitted in the 21st century. Science 326: 123-125.
    • (2009) Science , vol.326 , pp. 123-125
    • Ravishankara, A.R.1    Daniel, J.S.2    Portmann, R.W.3
  • 41
    • 12544260665 scopus 로고    scopus 로고
    • Effect of tree species on methane and ammonium oxidation capacity in forest soils
    • Reay DS, Nedwell DB, McNamara N, Ineson P (2005) Effect of tree species on methane and ammonium oxidation capacity in forest soils. Soil Biol Biochem 37: 719-730.
    • (2005) Soil Biol Biochem , vol.37 , pp. 719-730
    • Reay, D.S.1    Nedwell, D.B.2    McNamara, N.3    Ineson, P.4
  • 42
    • 0030301264 scopus 로고    scopus 로고
    • Fluxes of nitrous oxide from boreal peatlands as affected by peatland type, water table level and nitrification capacity
    • Regina K, Nykänen H, Silvola J, Martikainen P (1996) Fluxes of nitrous oxide from boreal peatlands as affected by peatland type, water table level and nitrification capacity. Biogeochem 35: 401-418.
    • (1996) Biogeochem , vol.35 , pp. 401-418
    • Regina, K.1    Nykänen, H.2    Silvola, J.3    Martikainen, P.4
  • 44
    • 0030814870 scopus 로고    scopus 로고
    • The ammonia monooxygenase structural gene amoA as a functional marker: molecular fine-scale analysis of natural ammonia-oxidizing populations
    • Rotthauwe JH, Witzel KP, Liesack W (1997) The ammonia monooxygenase structural gene amoA as a functional marker: molecular fine-scale analysis of natural ammonia-oxidizing populations. Appl Environ Microbiol 63: 4704-4712.
    • (1997) Appl Environ Microbiol , vol.63 , pp. 4704-4712
    • Rotthauwe, J.H.1    Witzel, K.P.2    Liesack, W.3
  • 45
    • 42149108694 scopus 로고    scopus 로고
    • Diversity and spatio-temporal distribution of ammonia-oxidizing Archaea and Bacteria in sediments of the Westerschelde estuary
    • Sahan E, Muyzer G (2008) Diversity and spatio-temporal distribution of ammonia-oxidizing Archaea and Bacteria in sediments of the Westerschelde estuary. FEMS Microbiol Ecol 64: 175-186.
    • (2008) FEMS Microbiol Ecol , vol.64 , pp. 175-186
    • Sahan, E.1    Muyzer, G.2
  • 46
    • 40949097432 scopus 로고    scopus 로고
    • Shifts in the relative abundance of ammonia-oxidizing bacteria and archaea across physicochemical gradients in a subterranean estuary
    • Santoro AE, Francis CA, de Sieyes NR, Boehm AB (2008) Shifts in the relative abundance of ammonia-oxidizing bacteria and archaea across physicochemical gradients in a subterranean estuary. Environ Microbiol 10: 1068-1079.
    • (2008) Environ Microbiol , vol.10 , pp. 1068-1079
    • Santoro, A.E.1    Francis, C.A.2    de Sieyes, N.R.3    Boehm, A.B.4
  • 47
    • 78349282589 scopus 로고    scopus 로고
    • Ammonia-oxidising archaea-physiology, ecology and evolution
    • R. K. Pool (Ed.), Oxford: Academic
    • Schleper C, Nicol GW (2010) Ammonia-oxidising archaea-physiology, ecology and evolution. In: Pool RK (ed) Advances in microbial physiology, vol 57. Academic, Oxford, pp 1-41.
    • (2010) Advances in Microbial Physiology , vol.57 , pp. 1-41
    • Schleper, C.1    Nicol, G.W.2
  • 48
    • 0026616613 scopus 로고
    • Metabolism of nitric oxide and nitrous oxide during nitrification and denitrification in soil at different incubation conditions
    • Schuster M, Conrad R (1992) Metabolism of nitric oxide and nitrous oxide during nitrification and denitrification in soil at different incubation conditions. FEMS Microbiol Lett 101: 133-143.
    • (1992) FEMS Microbiol Lett , vol.101 , pp. 133-143
    • Schuster, M.1    Conrad, R.2
  • 49
    • 43449114462 scopus 로고    scopus 로고
    • Abundance and composition of ammonia-oxidizing bacteria and ammonia-oxidizing archaea communities of an alkaline sandy loam
    • Shen JP, Zhang LM, Zhu YG, Zhang JB, He JZ (2008) Abundance and composition of ammonia-oxidizing bacteria and ammonia-oxidizing archaea communities of an alkaline sandy loam. Environ Microbiol 10: 1601-1611.
    • (2008) Environ Microbiol , vol.10 , pp. 1601-1611
    • Shen, J.P.1    Zhang, L.M.2    Zhu, Y.G.3    Zhang, J.B.4    He, J.Z.5
  • 50
    • 0035344248 scopus 로고    scopus 로고
    • Diversity and seasonal fluctuations of the dominant members of the bacterial soil community in a wheat field as determined by cultivation and molecular methods
    • Smit E, Leeflang P, Gommans S, van den Broek J, van Mil S, Wernars K (2001) Diversity and seasonal fluctuations of the dominant members of the bacterial soil community in a wheat field as determined by cultivation and molecular methods. Appl Environ Microbiol 67: 2284-2291.
    • (2001) Appl Environ Microbiol , vol.67 , pp. 2284-2291
    • Smit, E.1    Leeflang, P.2    Gommans, S.3    van den Broek, J.4    van Mil, S.5    Wernars, K.6
  • 52
    • 0032171213 scopus 로고    scopus 로고
    • Nitrification potential and urease activity in a mineral subsoil
    • Swensen B, Bakken LR (1998) Nitrification potential and urease activity in a mineral subsoil. Soil Biol Biochem 30: 1333-1341.
    • (1998) Soil Biol Biochem , vol.30 , pp. 1333-1341
    • Swensen, B.1    Bakken, L.R.2
  • 54
    • 41849095617 scopus 로고    scopus 로고
    • Growth, activity and temperature responses of ammonia-oxidizing archaea and bacteria in soil microcosms
    • Tourna M, Freitag TE, Nicol GW, Prosser JI (2008) Growth, activity and temperature responses of ammonia-oxidizing archaea and bacteria in soil microcosms. Environ Microbiol 10: 1357-1364.
    • (2008) Environ Microbiol , vol.10 , pp. 1357-1364
    • Tourna, M.1    Freitag, T.E.2    Nicol, G.W.3    Prosser, J.I.4
  • 56
    • 69949084247 scopus 로고    scopus 로고
    • Ammonia-oxidizing communities in a highly aerated full-scale activated sludge bioreactor: betaproteobacterial dynamics and low relative abundance of Crenarchaea
    • Wells GF, Park HD, Yeung CH, Eggleston B, Francis CA, Criddle CS (2009) Ammonia-oxidizing communities in a highly aerated full-scale activated sludge bioreactor: betaproteobacterial dynamics and low relative abundance of Crenarchaea. Environ Microbiol 11: 2310-2328.
    • (2009) Environ Microbiol , vol.11 , pp. 2310-2328
    • Wells, G.F.1    Park, H.D.2    Yeung, C.H.3    Eggleston, B.4    Francis, C.A.5    Criddle, C.S.6
  • 58
    • 77954145652 scopus 로고    scopus 로고
    • Responses of bacterial and archaeal ammonia oxidizers to soil organic and fertilizer amendments under long-term management
    • Wessén E, Nyberg K, Jansson JK, Hallin S (2010) Responses of bacterial and archaeal ammonia oxidizers to soil organic and fertilizer amendments under long-term management. Appl Soil Ecol 45: 193-200.
    • (2010) Appl Soil Ecol , vol.45 , pp. 193-200
    • Wessén, E.1    Nyberg, K.2    Jansson, J.K.3    Hallin, S.4
  • 59
    • 79959620844 scopus 로고    scopus 로고
    • Spatial distribution of ammonia oxidizing bacteria and archaea across a 44-hectare farm related to ecosystem functioning
    • doi:10.1038/ismej.2010.206
    • Wessén E, Söderström M, Stenberg B, Hellman M, Thomsen F, Klemedtson L, Philippot L, Hallin S (2011) Spatial distribution of ammonia oxidizing bacteria and archaea across a 44-hectare farm related to ecosystem functioning. ISME J 5(7): 1213-1225.
    • (2011) ISME J , vol.5 , Issue.7 , pp. 1213-1225
    • Wessén, E.1    Söderström, M.2    Stenberg, B.3    Hellman, M.4    Thomsen, F.5    Klemedtson, L.6    Philippot, L.7    Hallin, S.8


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.