Isolation, identification, and culture optimization of a novel glycinonitrile-hydrolyzing fungus-fusarium oxysporum H3

Applied Biochemistry and Biotechnology

Volumn 165, Issue 3-4, 2011, Pages 963-977

  Gong, Jin Song ^a   Lu, Zhen Ming ^a   Shi, Jing Song ^a   Dou, Wen Fang ^a   Xu, Hong Yu ^a   Zhou, Zhe Min ^a   Xu, Zheng Hong ^a  

^a JIANGNAN UNIVERSITY   (China)

Author keywords

Fusarium oxysporum; Glycinonitrile; Identification; Nitrile hydrolase; Optimization

Indexed keywords

CULTURE CONDITIONS; ENZYME FORMATION; FUSARIUM OXYSPORUMS; GLYCINONITRILE; GREEN CHEMISTRY; INITIAL PH; INTERNAL TRANSCRIBED SPACERS; MICROBIAL TRANSFORMATION; NITRILE HYDROLASE; RIBOSOMAL DNA; SEQUENCE ANALYSIS; SOIL SAMPLE; YEAST EXTRACTS;

AMINO ACIDS; CYANIDES; ENZYME ACTIVITY; GLUCOSE; HYDROLASES; IDENTIFICATION (CONTROL SYSTEMS); MANGANESE; MANGANESE COMPOUNDS; METAL IONS;

OPTIMIZATION;

AMINOACETONITRILE; CARBON; GLUCOSE; NITROGEN; RIBOSOME DNA;

ARTICLE; BACTERIUM CULTURE; BACTERIUM ISOLATION; FUSARIUM OXYSPORUM; NONHUMAN; PH; TEMPERATURE; YEAST;

AMINOACETONITRILE; CAPROLACTAM; CARBON; CULTURE MEDIA; DNA, RIBOSOMAL; FUNGAL PROTEINS; FUSARIUM; GLUCOSE; GLYCINE; HYDROGEN-ION CONCENTRATION; HYDROLASES; HYDROLYSIS; INDUSTRIAL MICROBIOLOGY; METALS, HEAVY; NITRILES; NITROGEN; PHYLOGENY; SOIL MICROBIOLOGY; TEMPERATURE;

FUNGI; FUSARIUM OXYSPORUM;

EID: 81355138788     PISSN: 02732289     EISSN: 15590291     Source Type: Journal    
DOI: 10.1007/s12010-011-9312-1     Document Type: Article

References (43)

1. A Schmid JS Dordick B Hauer A Kiener M Wubbolts B Witholt 2001 Industrial biocatalysis today and tomorrow Nature 409 258 266 10.1038/35051736 1:CAS:528:DC%2BD3MXlvFWhug%3D%3D (Pubitemid 32144296)
2. S Panke M Held M Wubbolts 2004 Trends and innovations in industrial biocatalysis for the production of fine chemicals Current Opinion in Biotechnology 15 272 279 10.1016/j.copbio.2004.06.011 1:CAS:528: DC%2BD2cXmsVKms70%3D (Pubitemid 39024687)
3. RC Zheng YS Wang ZQ Liu LY Xing YG Zheng YC Shen 2007 Isolation and characterization of Delftia tsuruhatensis ZJB-05174, capable of R-enantioselective degradation of 2,2-dimethylcyclopropanecarboxamide Research in Microbiology 158 258 264 10.1016/j.resmic.2006.12.007 1:CAS:528: DC%2BD2sXjslentb4%3D (Pubitemid 46505226)
4. W Leuchtenberger K Huthmacher K Drauz 2005 Biotechnological production of amino acids and derivatives: current status and prospects Applied Microbiology and Biotechnology 69 1 8 10.1007/s00253-005-0155-y 1:CAS:528:DC%2BD2MXht1Cqt7fI (Pubitemid 41719169)
5. JC Jallageas A Arnaud P Galzy 1980 Bioconversions of nitriles and their applications Advances in Biochemical Engineering/Biotechnology 14 1 32 10.1007/BFb0007187 1:CAS:528:DyaL3cXhs1ajtL8%3D
6. SJ Yeom HJ Kim DK Oh 2007 Enantioselective production of 2,2-dimethylcyclopropane carboxylic acid from 2,2-dimethylcyclopropane carbonitrile using the nitrile hydratase and amidase of Rhodococcus erythropolis ATCC 25544 Enzyme and Microbial Technology 41 842 848 10.1016/j.enzmictec.2007. 07.007 1:CAS:528:DC%2BD2sXhtVWmt7zO (Pubitemid 47361334)
7. A Banerjee P Kaul U Banerjee 2006 Enhancing the catalytic potential of nitrilase from Pseudomonas putida for stereoselective nitrile hydrolysis Applied Microbiology and Biotechnology 72 77 87 10.1007/s00253-005-0255-8 1:CAS:528:DC%2BD28XotVygtLY%3D (Pubitemid 44222425)
8. ZJ Zhang JH Xu YC He LM Ouyang YY Liu T Imanaka 2010 Efficient production of (R)-(-)-mandelic acid with highly substrate/product tolerant and enantioselective nitrilase of recombinant Alcaligenes sp Process Biochemistry 45 887 891 10.1016/j.procbio.2010.02.011 1:CAS:528:DC%2BC3cXlt1Ciurg%3D
9. JH Tao JH Xu 2009 Biocatalysis in development of green pharmaceutical processes Current Opinion in Chemical Biology 13 43 50 10.1016/j.cbpa.2009.01. 018 1:CAS:528:DC%2BD1MXlsVGjs7Y%3D
10. M Shen YG Zheng YC Shen 2009 Isolation and characterization of a novel Arthrobacter nitroguajacolicus ZJUTB06-99, capable of converting acrylonitrile to acrylic acid Process Biochemistry 44 781 785 10.1016/j.procbio.2009.03.006 1:CAS:528:DC%2BD1MXmtVKktbg%3D
11. 2) via carboxylation of ammonium ylide: a theoretical study by the scaled hypersphere search method Chemical Physics Letters 398 240 244 10.1016/j.cplett.2004.09.062 1:CAS:528:DC%2BD2cXos1Wru7s%3D
12. JC Hall 1998 Glycine Journal of Parenteral and Enteral Nutrition 22 393 398 10.1177/0148607198022006393 1:CAS:528:DC%2BD3cXlvFGntr4%3D (Pubitemid 28521273)
13. Fujiwara, K., Ueda, N., Matsuu, Y., Kato, H., & Hiai, A. (1993). Process for preparing glycine. United States Patent, US5258550.
14. Toshiya, A., Kiyoshi, K., & Kazumasa, O. (2001). Process for producing glycine. World Patent, WO01/48234.
15. RH Dave BD Hosangadi 1999 A simple and efficient diastereoselective Strecker synthesis of optically pure α-arylglycines Tetrahedron 55 11295 11308 10.1016/S0040-4020(99)00673-0 1:CAS:528:DyaK1MXmtVars7w%3D (Pubitemid 29400744)
16. A Banerjee R Sharma UC Banerjee 2002 The nitrile-degrading enzymes: current status and future prospects Applied Microbiology and Biotechnology 60 33 44 10.1007/s00253-002-1062-0 1:CAS:528:DC%2BD38XnvVOqtLo%3D
17. B Schulze MG Wubbolts 1999 Biocatalysis for industrial production of fine chemicals Current Opinion in Biotechnology 10 609 615 10.1016/S0958-1669(99) 00042-7 1:CAS:528:DyaK1MXotFSls70%3D
18. Tadanari, A., & Kazumasa, O. (2001). Method for microbiologically producing glycine. Japanese Patent, JP2001211892.
19. Shimizu, H., & Fujita, C. (1992). Biological production of glycine. Japanese Patent, JP4304892.
20. S Takamatsu U Braun S Limkaisang 2005 Phylogenetic relationships and generic affinity of Uncinula septata inferred from nuclear rDNA sequences Mycoscience 46 9 16 10.1007/s10267-004-0205-9 1:CAS:528:DC%2BD2MXktlWrs74%3D
21. A Pinnoi R Jeewon J Sakayaroj KD Hyde EBG Jones 2007 Berkleasmium crunisia sp. nov. and its phylogenetic affinities to the Pleosporales based on 18S and 28S rDNA sequence analyses Mycologia 99 378 384 10.3852/mycologia.99.3. 378 1:CAS:528:DC%2BD2sXhtVOgtLvP (Pubitemid 47282142)
22. RL Zhao R Jeewon DE Desjardin K Soytong KD Hyde 2007 Ribosomal DNA phylogenies of Cyathus: is the current infrageneric classification appropriate? Mycologia 99 385 395 10.3852/mycologia.99.3.385 1:CAS:528:DC%2BD2sXhtVOgtLvI (Pubitemid 47282143)
23. T Toda M Hyakumachi H Suga K Kageyama A Tanaka T Tani 1999 Differentiation of Rhizoctonia AG-D isolates from turfgrass into subgroups I and II based on rDNA and RAPD analyses European Journal of Plant Pathology 105 835 846 10.1023/A:1008736404263 1:CAS:528:DC%2BD3cXhvF2rsb8%3D (Pubitemid 30118915)
24. JD Thompson DG Higgins TJ Gibson 1994 CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice Nucleic Acids Research 22 4673 4680 10.1093/nar/22.22.4673 1:CAS:528:DyaK2MXitlSgu74%3D (Pubitemid 24354800)
25. JK Fawcett JE Scott 1960 A rapid and precise method for the determination of urea Journal of Clinical Pathology 13 156 159 10.1136/jcp.13.2.156 1:CAS:528:DyaF3cXhtFWhsbs%3D
26. L Martínková V Vejvoda O Kaplan D Kubáč A Malandr M Cantarella, et al. 2009 Fungal nitrilases as biocatalysts: recent developments Biotechnology Advances 27 661 670 10.1016/j.biotechadv.2009.04.027
27. S Rustler A Chmura RA Sheldon A Stolz 2008 Characterisation of the substrate specificity of the nitrile hydrolyzing system of the acidotolerant black yeast Exophiala oligosperma R1 Studies in Mycology 61 165 174 10.3114/sim.2008.61.17 1:STN:280:DC%2BD1M3gvFCrsg%3D%3D
28. DB Harper 1977 Fungal degradation of aromatic nitriles. Enzymology of C-N cleavage by Fusarium solani Biochemical Journal 167 685 692 1:CAS:528:DyaE1cXhtFKrs7Y%3D (Pubitemid 8240985)
29. MS Nawaz KD Chapatwala JH Wolfram 1989 Degradation of acetonitrile by Pseudomonas putida Applied and Environmental Microbiology 55 2267 2274 1:CAS:528:DyaL1MXlvFWiu7c%3D (Pubitemid 19228859)
30. M Kobayashi N Yanaka T Nagasawa H Yamada 1991 Hyperinduction of an aliphatic nitrilase by Rhodococcus rhodochrous K22 FEMS Microbiology Letters 77 121 124 10.1111/j.1574-6968.1991.tb04333.x 1:CAS:528:DyaK3MXmtVeqtQ%3D%3D
31. D O'Grady JT Pembroke 1994 Isolation of a novel Agrobacteriun spp capable of degrading a range of nitrile compounds Biotechnology Letters 16 47 50 10.1007/BF01022622
32. M Santoshkumar A Nayak O Anjaneya T Karegoudar 2010 A plate method for screening of bacteria capable of degrading aliphatic nitriles Journal of Industrial Microbiology & Biotechnology 37 111 115 10.1007/s10295-009-0663-3 1:CAS:528:DC%2BC3cXis1ehtg%3D%3D
33. M Kobayashi T Nagasawa H Yamada 1992 Enzymatic synthesis of acrylamide: a success story not yet over Trends in Biotechnology 10 402 408 10.1016/0167-7799(92)90283-2 1:CAS:528:DyaK3sXhtVSns7k%3D
34. B Dejaegher YV Heyden 2007 Ruggedness and robustness testing Journal of Chromatography A 1158 138 157 10.1016/j.chroma.2007.02.086 1:CAS:528: DC%2BD2sXnsFyls7o%3D (Pubitemid 47021141)
35. YG Zheng J Chen ZQ Liu MH Wu LY Xing YC Shen 2008 Isolation, identification and characterization of Bacillus subtilis ZJB-063, a versatile nitrile-converting bacterium Applied Microbiology and Biotechnology 77 985 993 10.1007/s00253-007-1236-x 1:CAS:528:DC%2BD2sXhsVaisrbF (Pubitemid 350264440)
36. YC He JH Xu JH Su L Zhou 2009 Bioproduction of glycolic acid from glycolonitrile with a new bacterial isolate of Alcaligenes sp. ECU0401 Applied Biochemistry and Biotechnology 160 1428 1440 10.1007/s12010-009-8607-y
37. V Babu Shilpi B Choudhury 2010 Nitrile-metabolizing potential of Amycolatopsis sp. IITR215 Process Biochemistry 45 866 873 10.1016/j.procbio. 2010.02.008 1:CAS:528:DC%2BC3cXlt1Ciur0%3D
38. O Kaplan V Vejvoda A Charvátová-Pisvejcová L Martínková 2006 Hyperinduction of nitrilases in filamentous fungi Journal of Industrial Microbiology & Biotechnology 33 891 896 10.1007/s10295-006-0161-9 1:CAS:528:DC%2BD28XhtVCntLbM (Pubitemid 44526880)
39. T Nagasawa T Nakamura H Yamada 1990 ε-Caprolactam, a new powerful inducer for the formation of Rhodococcus rhodochrous J1 nitrilase Archives of Microbiology 155 13 17 10.1007/BF00291267 1:CAS:528:DyaK3MXlvVKjuw%3D%3D
40. T Nagasawa M Kobayashi H Yamada 1988 Optimum culture conditions for the production of benzonitrilase by Rhodococcus rhodochrous J1 Archives of Microbiology 150 89 94 10.1007/BF00409723 1:CAS:528:DyaL1cXkt1Wmu78%3D
41. K Yamamoto K Oishi I Fujimatsu K Komatsu 1991 Production of R-(-)-mandelic acid from mandelonitrile by Alcaligenes faecalis ATCC 8750 Applied and Environmental Microbiology 57 3028 3032 1:CAS:528: DyaK38XlsFeisw%3D%3D
42. H Yamada S Shimizu M Kobayashi 2001 Hydratases involved in nitrile conversion: screening, characterization and application Chemical Record 1 152 161 10.1002/tcr.5 1:CAS:528:DC%2BD3MXmtlCru7c%3D (Pubitemid 33771701)
43. A Banerjee P Kaul U Banerjee 2006 Purification and characterization of an enantioselective arylacetonitrilase from Pseudomonas putida Archives of Microbiology 184 407 418 10.1007/s00203-005-0061-9 1:CAS:528: DC%2BD28XkvFKqtg%3D%3D (Pubitemid 43107307)