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Volumn 28, Issue 4, 2011, Pages 635-645

h-TBP: An approach based on intron-length polymorphism for the rapid isolation and characterization of the multiple members of the β-tubulin gene family in Camelina sativa (L.) Crantz

Author keywords

Brassicaceae; False flax; ILP; Introns; Oilseed plant; tubulin

Indexed keywords

CLONING; GENES; GENOME; PLANTS (BOTANY);

EID: 81255195234     PISSN: 13803743     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11032-010-9515-0     Document Type: Article
Times cited : (26)

References (30)
  • 1
  • 2
    • 2542505841 scopus 로고    scopus 로고
    • Tubulin-based polymorphism (TBP): a new tool, based on functionally relevant sequences, to assess genetic diversity in plant species
    • Bardini M, Lee D, Donini P, Mariani A, Gianì S, Toschi M, Lowe C, Breviario D (2004) Tubulin-based polymorphism (TBP): a new tool, based on functionally relevant sequences, to assess genetic diversity in plant species. Genome 47: 281-291.
    • (2004) Genome , vol.47 , pp. 281-291
    • Bardini, M.1    Lee, D.2    Donini, P.3    Mariani, A.4    Gianì, S.5    Toschi, M.6    Lowe, C.7    Breviario, D.8
  • 3
    • 0033555906 scopus 로고    scopus 로고
    • Tandem repeats finder: a program to analyze DNA sequences
    • Benson G (1999) Tandem repeats finder: a program to analyze DNA sequences. Nucleic Acids Res 27: 573-580.
    • (1999) Nucleic Acids Res , vol.27 , pp. 573-580
    • Benson, G.1
  • 4
    • 79960122666 scopus 로고    scopus 로고
    • cTBP: a successful ILP-based genotyping method targeted to well defined experimental needs
    • Braglia L, Manca A, Mastromauro F, Breviario D (2010) cTBP: a successful ILP-based genotyping method targeted to well defined experimental needs. Diversity 2: 572-585.
    • (2010) Diversity , vol.2 , pp. 572-585
    • Braglia, L.1    Manca, A.2    Mastromauro, F.3    Breviario, D.4
  • 5
    • 34548148774 scopus 로고    scopus 로고
    • High polymorphism and resolution in targeted fingerprinting with combined β-tubulin introns
    • Breviario D, Vance Baird Wm, Sangoi S, Hilu K, Blumetti P, Gianì S (2007) High polymorphism and resolution in targeted fingerprinting with combined β-tubulin introns. Mol Breed 20: 249-259.
    • (2007) Mol Breed , vol.20 , pp. 249-259
    • Breviario, D.1    Vance Baird, W.2    Sangoi, S.3    Hilu, K.4    Blumetti, P.5    Gianì, S.6
  • 6
    • 77955769632 scopus 로고    scopus 로고
    • Certifying the feed to guarantee the quality of traditional food: an easy way to trace plant species in complex mixtures
    • Casazza AP, Gavazzi F, Mastromauro M, Gianì S, Breviario D (2011) Certifying the feed to guarantee the quality of traditional food: an easy way to trace plant species in complex mixtures. Food Chem 124: 685-691.
    • (2011) Food Chem , vol.124 , pp. 685-691
    • Casazza, A.P.1    Gavazzi, F.2    Mastromauro, M.3    Gianì, S.4    Breviario, D.5
  • 7
    • 0002594984 scopus 로고
    • A rapid DNA isolation procedure for small quantities of fresh leaf tissue
    • Doyle JJ, Doyle JL (1987) A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytoch Bull 19: 11-15.
    • (1987) Phytoch Bull , vol.19 , pp. 11-15
    • Doyle, J.J.1    Doyle, J.L.2
  • 8
    • 0141676440 scopus 로고    scopus 로고
    • Oligonucleotide primers for the universal amplification of β-tubulin genes facilitate phylogenetic analyses in the regnum Fungi
    • Einax E, Voigt K (2003) Oligonucleotide primers for the universal amplification of β-tubulin genes facilitate phylogenetic analyses in the regnum Fungi. Org Divers Evol 3: 185-194.
    • (2003) Org Divers Evol , vol.3 , pp. 185-194
    • Einax, E.1    Voigt, K.2
  • 9
    • 34547743936 scopus 로고    scopus 로고
    • The α-tubulin gene family in wheat (Triticum aestivum L.) and differential gene expression during cold acclimation
    • Farajalla MR, Gulick P (2007) The α-tubulin gene family in wheat (Triticum aestivum L.) and differential gene expression during cold acclimation. Genome 50: 502-510.
    • (2007) Genome , vol.50 , pp. 502-510
    • Farajalla, M.R.1    Gulick, P.2
  • 11
    • 34249697421 scopus 로고    scopus 로고
    • Genetic mapping of agronomic traits in false flax (Camelina sativa subsp. sativa)
    • Gehringer A, Friedt W, Luhs W, Snowdon RJ (2006) Genetic mapping of agronomic traits in false flax (Camelina sativa subsp. sativa). Genome 49: 1555-1563.
    • (2006) Genome , vol.49 , pp. 1555-1563
    • Gehringer, A.1    Friedt, W.2    Luhs, W.3    Snowdon, R.J.4
  • 12
    • 78049491107 scopus 로고    scopus 로고
    • Camelina (Camelina sativa (L.) Crantz) as an alternative oilseed: molecular and ecogeographic analyses
    • Ghamkhar K, Croser J, Aryamanesh N, Campbell M, Kon'kova N, Francis C (2010) Camelina (Camelina sativa (L.) Crantz) as an alternative oilseed: molecular and ecogeographic analyses. Genome 53: 558-567.
    • (2010) Genome , vol.53 , pp. 558-567
    • Ghamkhar, K.1    Croser, J.2    Aryamanesh, N.3    Campbell, M.4    Kon'kova, N.5    Francis, C.6
  • 13
    • 0000859041 scopus 로고    scopus 로고
    • Rice beta-tubulins mRNA levels are modulated during flower development and in response to external stimuli
    • Gianì S, Breviario D (1996) Rice beta-tubulins mRNA levels are modulated during flower development and in response to external stimuli. Plant Sci 116: 147-157.
    • (1996) Plant Sci , vol.116 , pp. 147-157
    • Gianì, S.1    Breviario, D.2
  • 14
    • 46849112434 scopus 로고    scopus 로고
    • Molecular cloning, expression profiling, and yeast complementation of 19 β-tubulin cDNAs from developing cotton ovules
    • He X-C, Qin Y-M, Xu Y, Hu C-Y, Zhu Y-X (2008) Molecular cloning, expression profiling, and yeast complementation of 19 β-tubulin cDNAs from developing cotton ovules. J Exp Bot 59: 2687-2695.
    • (2008) J Exp Bot , vol.59 , pp. 2687-2695
    • He, X.-C.1    Qin, Y.-M.2    Xu, Y.3    Hu, C.-Y.4    Zhu, Y.-X.5
  • 15
    • 12044253190 scopus 로고
    • An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis
    • Hillis DM, Bull JJ (1993) An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis. Syst Biol 42: 182-192.
    • (1993) Syst Biol , vol.42 , pp. 182-192
    • Hillis, D.M.1    Bull, J.J.2
  • 16
    • 5444231822 scopus 로고    scopus 로고
    • A large plant beta-tubulin family with minimal C-terminal variation but differences in expression
    • Jost W, Baur A, Nick P, Reski R, Gorr G (2004) A large plant beta-tubulin family with minimal C-terminal variation but differences in expression. Gene 340: 151-160.
    • (2004) Gene , vol.340 , pp. 151-160
    • Jost, W.1    Baur, A.2    Nick, P.3    Reski, R.4    Gorr, G.5
  • 17
    • 85024796839 scopus 로고
    • Evolution and spread of gold of pleasure (Camelina sativa S.L.)
    • Knorzer KH (1978) Evolution and spread of gold of pleasure (Camelina sativa S. L.). Ber Dtsch Bot Ges 91: 187-195.
    • (1978) Ber Dtsch Bot Ges , vol.91 , pp. 187-195
    • Knorzer, K.H.1
  • 18
    • 0026813040 scopus 로고
    • The β-tubulin gene family of pea: primary structures, genomic organization and intron-dependent evolution of genes
    • Liaud MF, Brinkmann H, Cerff R (1992) The β-tubulin gene family of pea: primary structures, genomic organization and intron-dependent evolution of genes. Plant Mol Biol 18: 639-651.
    • (1992) Plant Mol Biol , vol.18 , pp. 639-651
    • Liaud, M.F.1    Brinkmann, H.2    Cerff, R.3
  • 21
    • 36248982734 scopus 로고    scopus 로고
    • Differential expansion and expression of α- and β-tubulin gene families in Populus
    • Oakley RV, Wang YS, Ramakrishna W, Harding SA, Tsai CJ (2007) Differential expansion and expression of α- and β-tubulin gene families in Populus. Plant Physiol 145: 961-973.
    • (2007) Plant Physiol , vol.145 , pp. 961-973
    • Oakley, R.V.1    Wang, Y.S.2    Ramakrishna, W.3    Harding, S.A.4    Tsai, C.J.5
  • 22
    • 0001829453 scopus 로고
    • Nucleic acids II: the polymerase chain reaction
    • 2nd edn., D. Hillis and C. Moritz (Eds.), Sunderland, MA: Sinauer Associates Inc
    • Palumbi SR (1995) Nucleic acids II: the polymerase chain reaction. In: Hillis D, Moritz C (eds) Molecular systematics, 2nd edn. Sinauer Associates Inc, Sunderland, MA, pp 205-247.
    • (1995) Molecular Systematics , pp. 205-247
    • Palumbi, S.R.1
  • 23
    • 0001804447 scopus 로고
    • Camelina: a promising low-input oilseed
    • J. Janick and J. E. Simon (Eds.), New York: Wiley
    • Putnam DH, Budin JT, Field LA, Breene WM (1993) Camelina: a promising low-input oilseed. In: Janick J, Simon JE (eds) New crops. Wiley, New York, pp 314-322.
    • (1993) New Crops , pp. 314-322
    • Putnam, D.H.1    Budin, J.T.2    Field, L.A.3    Breene, W.M.4
  • 24
    • 84858336446 scopus 로고    scopus 로고
    • Camelina meal approved for feedlot cattle
    • Schill SR (2009) Camelina meal approved for feedlot cattle. Biodiesel Mag. http://www.biodieselmagazine.com/article.jsp?article_id=3837.
    • (2009) Biodiesel Mag
    • Schill, S.R.1
  • 25
    • 0004069901 scopus 로고
    • San Francisco, CA, USA: Freeman, W. H. and Co
    • Sneath PHA, Sokal RR (1973) Numerical taxonomy. Freeman, W. H. and Co., San Francisco, CA, USA, p 573.
    • (1973) Numerical Taxonomy , pp. 573
    • Sneath, P.H.A.1    Sokal, R.R.2
  • 26
    • 0026860199 scopus 로고
    • The small genome of Arabidopsis contains at least nine expressed β-tubulin genes
    • Snustad DP, Haas NA, Kopczak SD, Silflow CD (1992) The small genome of Arabidopsis contains at least nine expressed β-tubulin genes. Plant Cell 4: 549-556.
    • (1992) Plant Cell , vol.4 , pp. 549-556
    • Snustad, D.P.1    Haas, N.A.2    Kopczak, S.D.3    Silflow, C.D.4
  • 27
    • 0028509254 scopus 로고
    • TREECON for Windows: a software package for the construction and drawing of evolutionary trees for the Microsoft Windows environment
    • van de Peer Y, De Wachter R (1994) TREECON for Windows: a software package for the construction and drawing of evolutionary trees for the Microsoft Windows environment. Comput Appl Biosci 10: 569-570.
    • (1994) Comput Appl Biosci , vol.10 , pp. 569-570
    • van de Peer, Y.1    de Wachter, R.2
  • 28
    • 26844522333 scopus 로고    scopus 로고
    • Genetic diversity in camelina germplasm as revealed by seed quality characteristics and RAPDs polymorphism
    • Vollmann J, Grausgruber H, Stift G, Dryzhyruk V, Lelley T (2005) Genetic diversity in camelina germplasm as revealed by seed quality characteristics and RAPDs polymorphism. Plant Breed 124: 446-453.
    • (2005) Plant Breed , vol.124 , pp. 446-453
    • Vollmann, J.1    Grausgruber, H.2    Stift, G.3    Dryzhyruk, V.4    Lelley, T.5
  • 29
    • 34548280765 scopus 로고    scopus 로고
    • Agronomic evaluation of camelina genotypes selected for seed quality characteristics
    • Vollmann J, Moritz T, Kargl C, Baumgartner S, Wagentristl H (2007) Agronomic evaluation of camelina genotypes selected for seed quality characteristics. Indust Crops Prod 26: 270-277.
    • (2007) Indust Crops Prod , vol.26 , pp. 270-277
    • Vollmann, J.1    Moritz, T.2    Kargl, C.3    Baumgartner, S.4    Wagentristl, H.5
  • 30
    • 33744922107 scopus 로고    scopus 로고
    • Genome-wide investigation of intron length polymorphisms and their potential as molecular markers in rice (Oryza sativaL.)
    • Wang X, Zhao X, Zhu J, Wu W (2005) Genome-wide investigation of intron length polymorphisms and their potential as molecular markers in rice (Oryza sativaL.). DNA Res 12: 417-427.
    • (2005) DNA Res , vol.12 , pp. 417-427
    • Wang, X.1    Zhao, X.2    Zhu, J.3    Wu, W.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.