-
1
-
-
0142248833
-
Thermodynamical Interpretation of an adaptive walk on a Mt. Fuji-type fitness landscape: Einstein relation-like formula holds in a stochastic evolution
-
Aita T., Husimi Y. Thermodynamical Interpretation of an adaptive walk on a Mt. Fuji-type fitness landscape: Einstein relation-like formula holds in a stochastic evolution. J. Theor. Biol. 2003, 225:215-228.
-
(2003)
J. Theor. Biol.
, vol.225
, pp. 215-228
-
-
Aita, T.1
Husimi, Y.2
-
2
-
-
3843111265
-
Thermodynamical interpretation of evolutionary dynamics on a fitness landscape in an evolution reactor, I
-
Aita T., Morinaga S., Husimi Y. Thermodynamical interpretation of evolutionary dynamics on a fitness landscape in an evolution reactor, I. Bull. Math. Biol. 2004, 66:1371-1403.
-
(2004)
Bull. Math. Biol.
, vol.66
, pp. 1371-1403
-
-
Aita, T.1
Morinaga, S.2
Husimi, Y.3
-
3
-
-
3843111265
-
Thermodynamical interpretation of evolutionary dynamics on a fitness landscape in an evolution reactor, II
-
Aita T., Morinaga S., Husimi Y. Thermodynamical interpretation of evolutionary dynamics on a fitness landscape in an evolution reactor, II. Bull. Math. Biol. 2005, 66:1371-1403.
-
(2005)
Bull. Math. Biol.
, vol.66
, pp. 1371-1403
-
-
Aita, T.1
Morinaga, S.2
Husimi, Y.3
-
4
-
-
34247639017
-
Extracting characteristic properties of fitness landscape from in vitro molecular evolution: a case study on infectivity of fd phage to E. coli
-
Aita T., Hayashi Y., Toyota H., Husimi Y., Urabe I., Yomo T. Extracting characteristic properties of fitness landscape from in vitro molecular evolution: a case study on infectivity of fd phage to E. coli. J. Theor. Biol. 2007, 246:538-550.
-
(2007)
J. Theor. Biol.
, vol.246
, pp. 538-550
-
-
Aita, T.1
Hayashi, Y.2
Toyota, H.3
Husimi, Y.4
Urabe, I.5
Yomo, T.6
-
5
-
-
50249103240
-
Hierarchical distribution of ascending slopes, nearly neutral networks, highlands, and local optima at the dth order in an NK fitness landscape
-
Aita T. Hierarchical distribution of ascending slopes, nearly neutral networks, highlands, and local optima at the dth order in an NK fitness landscape. J. Theor. Biol. 2008, 254:252-263.
-
(2008)
J. Theor. Biol.
, vol.254
, pp. 252-263
-
-
Aita, T.1
-
6
-
-
84873257607
-
Biomolecular information gained through in vitro evolution
-
Aita T., Husimi Y. Biomolecular information gained through in vitro evolution. Biophys. Rev. 2010, 2:1-11.
-
(2010)
Biophys. Rev.
, vol.2
, pp. 1-11
-
-
Aita, T.1
Husimi, Y.2
-
7
-
-
51349120674
-
Emerging of stochastic dynamical equalities and steady state thermodynamics from Darwinian dynamics
-
Ao P. Emerging of stochastic dynamical equalities and steady state thermodynamics from Darwinian dynamics. Commun. Theor. Phys. 2008, 49:1073-1090.
-
(2008)
Commun. Theor. Phys.
, vol.49
, pp. 1073-1090
-
-
Ao, P.1
-
9
-
-
33845503073
-
Adaptive evolution of transcription factor binding sites
-
Berg J., Willmann S., Lässig M. Adaptive evolution of transcription factor binding sites. BMC Evol. Biol. 2004, 4:42.
-
(2004)
BMC Evol. Biol.
, vol.4
, pp. 42
-
-
Berg, J.1
Willmann, S.2
Lässig, M.3
-
11
-
-
28344435662
-
Population dynamics simulations of functional model proteins
-
Blackburne B.P., Hirst J.D. Population dynamics simulations of functional model proteins. J. Chem. Phys. 2005, 123:154907.
-
(2005)
J. Chem. Phys.
, vol.123
, pp. 154907
-
-
Blackburne, B.P.1
Hirst, J.D.2
-
12
-
-
14144251690
-
Thermodynamic prediction of protein neutrality
-
Bloom J.D., Silberg J.J., Wilke C.O., Drummond D.A., Adami C., Arnold F.H. Thermodynamic prediction of protein neutrality. Proc. Natl. Acad. Sci. USA 2005, 102:606-611.
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 606-611
-
-
Bloom, J.D.1
Silberg, J.J.2
Wilke, C.O.3
Drummond, D.A.4
Adami, C.5
Arnold, F.H.6
-
13
-
-
0030888108
-
Directionality principles in thermodynamics and evolution
-
Demetrius L. Directionality principles in thermodynamics and evolution. Proc. Natl. Acad. Sci. USA 1997, 94:3491-3498.
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 3491-3498
-
-
Demetrius, L.1
-
14
-
-
0034618739
-
Thermodynamics and evolution
-
Demetrius L. Thermodynamics and evolution. J. Theor. Biol. 2000, 206:1-16.
-
(2000)
J. Theor. Biol.
, vol.206
, pp. 1-16
-
-
Demetrius, L.1
-
15
-
-
0033944978
-
Natural selection: a phase transition?
-
Eigen M. Natural selection: a phase transition?. Biophys. Chem. 2000, 85:101-123.
-
(2000)
Biophys. Chem.
, vol.85
, pp. 101-123
-
-
Eigen, M.1
-
16
-
-
34247603929
-
Experimental rugged fitness landscape in protein sequence space
-
Hayashi Y., Aita T., Toyota H., Husimi Y., Urabe I., Yomo T. Experimental rugged fitness landscape in protein sequence space. PLoS ONE 2006, 1:e96.
-
(2006)
PLoS ONE
, vol.1
-
-
Hayashi, Y.1
Aita, T.2
Toyota, H.3
Husimi, Y.4
Urabe, I.5
Yomo, T.6
-
17
-
-
0024281037
-
Free fitness that always increases in evolution
-
Iwasa Y. Free fitness that always increases in evolution. J. Theor. Biol. 1988, 135:265-281.
-
(1988)
J. Theor. Biol.
, vol.135
, pp. 265-281
-
-
Iwasa, Y.1
-
18
-
-
54049090446
-
Reciprocal relations in evolutionary processes
-
Iguchi K. Reciprocal relations in evolutionary processes. Prog. Theor. Phys. 2008, Suppl. 173:235-242.
-
(2008)
Prog. Theor. Phys.
, vol.SUPPL. 173
, pp. 235-242
-
-
Iguchi, K.1
-
20
-
-
0014935646
-
Natural selection and the concept of a protein space
-
Maynard-Smith J. Natural selection and the concept of a protein space. Nature 1970, 225:563-564.
-
(1970)
Nature
, vol.225
, pp. 563-564
-
-
Maynard-Smith, J.1
-
21
-
-
77749254888
-
Fitness flux and ubiquity of adaptive evolution
-
Mustonen V., Lässig M. Fitness flux and ubiquity of adaptive evolution. Proc. Natl. Acad. Sci. USA 2010, 107:4248-4253.
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 4248-4253
-
-
Mustonen, V.1
Lässig, M.2
-
22
-
-
33947158650
-
Effective selection system for experimental evolution of random polypeptides towards DNA-binding protein
-
Nakashima T., Toyota H., Urabe I., Yomo T. Effective selection system for experimental evolution of random polypeptides towards DNA-binding protein. J. Biosci. Bioeng. 2007, 103:155-160.
-
(2007)
J. Biosci. Bioeng.
, vol.103
, pp. 155-160
-
-
Nakashima, T.1
Toyota, H.2
Urabe, I.3
Yomo, T.4
-
23
-
-
0030735693
-
Statistical mechanics of simple models of protein folding and design
-
Pande V.S., Grosberg A.Y., Tanaka T. Statistical mechanics of simple models of protein folding and design. Biophys. J. 1997, 73:3192-3210.
-
(1997)
Biophys. J.
, vol.73
, pp. 3192-3210
-
-
Pande, V.S.1
Grosberg, A.Y.2
Tanaka, T.3
-
24
-
-
0344630293
-
On the relation between fluctuation and response in biological systems
-
Sato K., Ito Y., Yomo T., Kaneko K. On the relation between fluctuation and response in biological systems. Proc. Natl. Acad. Sci. USA 2003, 100:14086-14090.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 14086-14090
-
-
Sato, K.1
Ito, Y.2
Yomo, T.3
Kaneko, K.4
-
26
-
-
22144437325
-
The application of statistical physics to evolutionary biology
-
Sella G., Hirsh A.E. The application of statistical physics to evolutionary biology. Proc. Natl. Acad. Sci. USA 2005, 102:9541-9546.
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 9541-9546
-
-
Sella, G.1
Hirsh, A.E.2
-
27
-
-
0029868473
-
A mathematical analysis of in vitro molecular selection-amplification
-
Sun F., Galas D., Waterman M.S. A mathematical analysis of in vitro molecular selection-amplification. J. Mol. Biol. 1996, 258:650-660.
-
(1996)
J. Mol. Biol.
, vol.258
, pp. 650-660
-
-
Sun, F.1
Galas, D.2
Waterman, M.S.3
-
29
-
-
0033779402
-
Temperature adaptation of enzymes: lessons from laboratory evolution
-
Wintrode P.L., Arnold F.H. Temperature adaptation of enzymes: lessons from laboratory evolution. Adv. Protein Chem. 2000, 55:161-225.
-
(2000)
Adv. Protein Chem.
, vol.55
, pp. 161-225
-
-
Wintrode, P.L.1
Arnold, F.H.2
-
30
-
-
44749094959
-
The energy landscape theory of protein folding
-
Springer, H. Flyvbjerg, J. Hertz, M.H. Jensen, O.G. Mouritsen, K. Sneppen (Eds.)
-
Wolynes P.G., Luthey-Schulten Z. The energy landscape theory of protein folding. Physics of Biological Systems 1997, 61-79. Springer. H. Flyvbjerg, J. Hertz, M.H. Jensen, O.G. Mouritsen, K. Sneppen (Eds.).
-
(1997)
Physics of Biological Systems
, pp. 61-79
-
-
Wolynes, P.G.1
Luthey-Schulten, Z.2
-
31
-
-
0000907353
-
The roles of mutation, inbreeding, crossbreeding and selection in evolution
-
Wright S. The roles of mutation, inbreeding, crossbreeding and selection in evolution. Proceedings of the Sixth International Congress of Genetics 1932, vol. 1:356-366.
-
(1932)
Proceedings of the Sixth International Congress of Genetics
, vol.1
, pp. 356-366
-
-
Wright, S.1
|