-
2
-
-
84873273860
-
An interpretation of evolutionary dynamics in in vitro molecular evolution from thermodynamical and informational viewpoint
-
(in Japanese with English abstract)
-
Aita T, Husimi Y (2006) An interpretation of evolutionary dynamics in in vitro molecular evolution from thermodynamical and informational viewpoint (in Japanese with English abstract). Seibutsu Butsuri (Biophysics) 46: 137-143.
-
(2006)
Seibutsu Butsuri (Biophysics)
, vol.46
, pp. 137-143
-
-
Aita, T.1
Husimi, Y.2
-
3
-
-
3843111265
-
Thermodynamical interpretation of evolutionary dynamics on a fitness landscape in an evolution reactor, I
-
**Aita T, Morinaga S, Husimi Y (2004) Thermodynamical interpretation of evolutionary dynamics on a fitness landscape in an evolution reactor, I. Bull Math Biol 66: 1371-1403.
-
(2004)
Bull Math Biol
, vol.66
, pp. 1371-1403
-
-
Aita, T.1
Morinaga, S.2
Husimi, Y.3
-
4
-
-
3843111265
-
Thermodynamical interpretation of evolutionary dynamics on a fitness landscape in an evolution reactor, II
-
*Aita T, Morinaga S, Husimi Y (2005) Thermodynamical interpretation of evolutionary dynamics on a fitness landscape in an evolution reactor, II. Bull Math Biol 66: 1371-1403.
-
(2005)
Bull Math Biol
, vol.66
, pp. 1371-1403
-
-
Aita, T.1
Morinaga, S.2
Husimi, Y.3
-
5
-
-
34247639017
-
Extracting characteristic properties of fitness landscape from in vitro molecular evolution: a case study on infectivity of fd phage to E.coli
-
Aita T, Hayashi Y, Toyota H, Husimi Y, Urabe I, Yomo T (2007) Extracting characteristic properties of fitness landscape from in vitro molecular evolution: a case study on infectivity of fd phage to E. coli. J Theor Biol 246: 538-550.
-
(2007)
J Theor Biol
, vol.246
, pp. 538-550
-
-
Aita, T.1
Hayashi, Y.2
Toyota, H.3
Husimi, Y.4
Urabe, I.5
Yomo, T.6
-
6
-
-
51349120674
-
Emerging of stochastic dynamical equalities and steady state thermodynamics from Darwinian dynamics
-
Ao P (2008) Emerging of stochastic dynamical equalities and steady state thermodynamics from Darwinian dynamics. Commun Theor Phys 49: 1073-1090.
-
(2008)
Commun Theor Phys
, vol.49
, pp. 1073-1090
-
-
Ao, P.1
-
9
-
-
28344435662
-
Population dynamics simulations of functional model proteins
-
*Blackburne BP, Hirst JD (2005) Population dynamics simulations of functional model proteins. J Chem Phys 123: 154907.
-
(2005)
J Chem Phys
, vol.123
, pp. 154907
-
-
Blackburne, B.P.1
Hirst, J.D.2
-
11
-
-
0033944978
-
Natural selection: a phase transition?
-
*Eigen M (2000) Natural selection: a phase transition? Biophys Chem 85: 101-123.
-
(2000)
Biophys Chem
, vol.85
, pp. 101-123
-
-
Eigen, M.1
-
13
-
-
0000472452
-
On the movement of small particles suspended in stationary liquids required by the molecular-kinetic theory of heat
-
(in German)
-
Einstein A (1905) On the movement of small particles suspended in stationary liquids required by the molecular-kinetic theory of heat (in German). Ann D Phys 17: 549-560.
-
(1905)
Ann D Phys
, vol.17
, pp. 549-560
-
-
Einstein, A.1
-
15
-
-
0142139707
-
Selective value landscape on the base sequence space and concept of free selective value: a model of quasi-species
-
(in Japanese with English abstract)
-
Husimi Y (1988) Selective value landscape on the base sequence space and concept of free selective value: a model of quasi-species (in Japanese with English abstract). Viva Origino 16: 136-141.
-
(1988)
Viva Origino
, vol.16
, pp. 136-141
-
-
Husimi, Y.1
-
16
-
-
0024281037
-
Free fitness that always increases in evolution
-
Iwasa Y (1988) Free fitness that always increases in evolution. J Theor Biol 135: 265-281.
-
(1988)
J Theor Biol
, vol.135
, pp. 265-281
-
-
Iwasa, Y.1
-
17
-
-
54049090446
-
Reciprocal relations in evolutionary processes
-
Iguchi K (2008) Reciprocal relations in evolutionary processes. Prog Theor Phys Suppl 173: 235-242.
-
(2008)
Prog Theor Phys Suppl
, vol.173
, pp. 235-242
-
-
Iguchi, K.1
-
19
-
-
0037458324
-
Bioinformatic principles underlying the information content of transcription factor binding sites
-
Kim JT, Martinetz T, Polani D (2003) Bioinformatic principles underlying the information content of transcription factor binding sites. J Theor Biol 220: 529-544.
-
(2003)
J Theor Biol
, vol.220
, pp. 529-544
-
-
Kim, J.T.1
Martinetz, T.2
Polani, D.3
-
20
-
-
0014935646
-
Natural selection and the concept of a protein space
-
Maynard-Smith J (1970) Natural selection and the concept of a protein space. Nature 225: 563-564.
-
(1970)
Nature
, vol.225
, pp. 563-564
-
-
Maynard-Smith, J.1
-
21
-
-
0014107493
-
An extracellular Darwinian experiment with a self-duplicating nucleic acid molecule
-
Mills DR, Peterson RL, Spiegelman S (1967) An extracellular Darwinian experiment with a self-duplicating nucleic acid molecule. Proc Natl Acad Sci USA 58: 217-224.
-
(1967)
Proc Natl Acad Sci USA
, vol.58
, pp. 217-224
-
-
Mills, D.R.1
Peterson, R.L.2
Spiegelman, S.3
-
22
-
-
0030735693
-
Statistical mechanics of simple models of protein folding and design
-
Pande VS, Grosberg AY, Tanaka T (1997) Statistical mechanics of simple models of protein folding and design. Biophys J 73: 3192-3210.
-
(1997)
Biophys J
, vol.73
, pp. 3192-3210
-
-
Pande, V.S.1
Grosberg, A.Y.2
Tanaka, T.3
-
23
-
-
0344630293
-
On the relation between fluctuation and response in biological systems
-
**Sato K, Ito Y, Yomo T, Kaneko K (2003) On the relation between fluctuation and response in biological systems. Proc Natl Acad Sci USA 100: 14086-14090.
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 14086-14090
-
-
Sato, K.1
Ito, Y.2
Yomo, T.3
Kaneko, K.4
-
24
-
-
0034661690
-
Evolution of biological information
-
Schneider TD (2000) Evolution of biological information. Nucleic Acid Res 28: 2794-2799.
-
(2000)
Nucleic Acid Res
, vol.28
, pp. 2794-2799
-
-
Schneider, T.D.1
-
25
-
-
0023811909
-
Stationary mutant distributions and evolutionary optimization
-
Schuster P, Swetina J (1988) Stationary mutant distributions and evolutionary optimization. Bull Math Biol 50: 635-660.
-
(1988)
Bull Math Biol
, vol.50
, pp. 635-660
-
-
Schuster, P.1
Swetina, J.2
-
27
-
-
42749085554
-
Thermodynamics of natural selection I: energy flow and the limits on organization
-
Smith E (2008a) Thermodynamics of natural selection I: energy flow and the limits on organization. J Theor Biol 252: 185-197.
-
(2008)
J Theor Biol
, vol.252
, pp. 185-197
-
-
Smith, E.1
-
28
-
-
42749088088
-
Thermodynamics of natural selection II: chemical Carnot cycles
-
Smith E (2008b) Thermodynamics of natural selection II: chemical Carnot cycles. J Theor Biol 252: 198-212.
-
(2008)
J Theor Biol
, vol.252
, pp. 198-212
-
-
Smith, E.1
-
29
-
-
42749093596
-
Thermodynamics of natural selection III: Landauer's principle in computation and chemistry
-
Smith E (2008c) Thermodynamics of natural selection III: Landauer's principle in computation and chemistry. J Theor Biol 252: 213-220.
-
(2008)
J Theor Biol
, vol.252
, pp. 213-220
-
-
Smith, E.1
-
30
-
-
34250935158
-
Uber die Entropieverminderung in einem thermodynamicschen System bei eingriffen intelligenter Wesen
-
Szilard L (1929) Uber die Entropieverminderung in einem thermodynamicschen System bei eingriffen intelligenter Wesen. Z Physik 53: 840-856.
-
(1929)
Z Physik
, vol.53
, pp. 840-856
-
-
Szilard, L.1
-
31
-
-
0037665961
-
Functional information: molecular messages
-
*Szostak JW (2003) Functional information: molecular messages. Nature 423: 689.
-
(2003)
Nature
, vol.423
, pp. 689
-
-
Szostak, J.W.1
-
32
-
-
0036706621
-
A theory of pragmatic information and its application to the quasi-species model of biological evolution
-
**Weinberger ED (2002) A theory of pragmatic information and its application to the quasi-species model of biological evolution. Biosystems 66: 105-119.
-
(2002)
Biosystems
, vol.66
, pp. 105-119
-
-
Weinberger, E.D.1
-
33
-
-
0035913336
-
Evolution of digital organisms at high mutation rates leads to survival of the flattest
-
Wilke CO, Wang JL, Ofria C, Lenski RE, Adami C (2001) Evolution of digital organisms at high mutation rates leads to survival of the flattest. Nature 412: 331-333.
-
(2001)
Nature
, vol.412
, pp. 331-333
-
-
Wilke, C.O.1
Wang, J.L.2
Ofria, C.3
Lenski, R.E.4
Adami, C.5
-
34
-
-
44749094959
-
The energy landscape theory of protein folding
-
In: Flyvbjerg H, Hertz J, Jensen MH, Mouritsen OG, Sneppen K (eds), Springer, New York
-
Wolynes PG, Luthey-Schulten Z (1997) The energy landscape theory of protein folding. In: Flyvbjerg H, Hertz J, Jensen MH, Mouritsen OG, Sneppen K (eds) Physics of biological systems: from molecules to species. Springer, New York, pp 61-79.
-
(1997)
Physics of biological systems: From molecules to species
, pp. 61-79
-
-
Wolynes, P.G.1
Luthey-Schulten, Z.2
|