PCR markers for selection of adult plant leaf rust resistance in barley (Hordeum vulgare L.)

Molecular Breeding

Volumn 28, Issue 4, 2011, Pages 657-666

  Liu, Fenglou ^a,b   Gupta, Sanjiv ^b,c   Zhang, Xiao Qi ^b   Jones, Michael ^b   Loughman, Robert ^c   Lance, Reg ^c   Li, Chengdao ^b,c  

^a NORTHWEST A F UNIVERSITY   (China)

^b MURDOCH UNIVERSITY   (Australia)

^c Western Australia   (Australia)

Author keywords

Barley (Hordeum vulgare L.); Defence gene homologue (DGH); Durable resistance; Leaf rust

Indexed keywords

BIOMARKERS; DNA SEQUENCES; PLANTS (BOTANY);

ADULT PLANT RESISTANCES; BARLEY (HORDEUM VULGARE L); DEFENSE GENE HOMOLOGUE; DEFENSE GENES; DURABLE RESISTANCE; GENE HOMOLOGUES; HORDEUM VULGARE L; LEAF RUST; MOLECULAR MARKER; PLANT RESISTANCE GENES;

GENES;

HORDEUM; HORDEUM VULGARE SUBSP. VULGARE; PUCCINIA HORDEI; TRITICUM AESTIVUM;

EID: 81255150013     PISSN: 13803743     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11032-010-9517-y     Document Type: Article

References (34)

1. Aghnoum R, Marcel TC, Johrde A, Pecchioni N, Schweizer P, Niks RE (2010) Basal host resistance of barley to powdery mildew: connecting quantitative trait loci and candidate genes. Mol Plant Microbe Interact 23: 91-102. doi: 10. 1094/MPMI-23-1-0091.
2. Ashida T, Nasuda S, Sat K, Endo TR (2007) Dissection of barley chromosome 5H in common wheat. Genes Genet Syst 82: 123-133.
3. Bansal U, Hayden M, Venkata B, Khanna R, Saini R, Bariana H (2008) Genetic mapping of adult plant leaf rust resistance genes Lr48 and Lr49 in common wheat. Theor Appl Genet 117: 307-312.
4. Bellgard M, Ye J, Gojobori T, Appels R (2004) The bioinformatics challenges in comparative analysis of cereal genomes-an overview. Funct Integr Genomics 4: 1-11.
5. Draper J, Mur LAJ, Jenkins G, Ghosh-Biswas GC, Bablak P, Hasterok R, Routledge APM (2001) Brachypodium distachyon. A new model system for functional genomics in grasses. Plant Physiol 127: 1539-1555. doi: 10. 1104/pp. 010196.
6. Golegaonkar PG, Singh D, Park RF (2009) Evaluation of seedling and adult plant resistance to Puccinia hordei in barley. Euphytica 166: 183-197.
7. Hiebert CW, Thomas JB, Somers DJ, McCallum BD, Fox SL (2007) Microsatellite mapping of adult-plant leaf rust resistance gene Lr22a in wheat. Theor Appl Genet 115: 877-884.
8. Hori K, Kobayashi T, Sato K, Takeda K (2005a) QTL analysis of Fusarium head blight resistance using a high-density linkage map in barley. Theor Appl Genet 111: 1661-1672.
9. Hori K, Sato K, Nankaku N, Takeda K (2005b) QTL Analysis in recombinant chromosome substitution lines and doubled haploid lines derived from a cross between Hordeum vulgare ssp. vulgare and Hordeum vulgare ssp. spontaneum. Mol Breed 16: 295-311.
10. Li C, Ni P, Francki M, Hunter A, Zhang Y, Schibeci D, Li H, Tarr A, Wang J, Cakir M, Yu J, Bellgard M, Lance R, Appels R (2004) Genes controlling seed dormancy and pre-harvest sprouting in a rice-wheat-barley comparison. Funct Integr Genomics 4: 84-93.
11. Li CD, Gupta S, Zhang XQ, Westcott S, Yang J, Park R, Platz G, Loughman R, Lance R (2010) A major QTL controlling adult plant resistance for barley leaf rust. Plant Breed.
12. Mammadov J, Steffenson B, Maroof M (2005) High-resolution mapping of the barley leaf rust resistance gene Rph5 using barley expressed sequence tags (ESTs) and synteny with rice. Theor Appl Genet 111: 1651-1660.
13. Manly KF (1993) A Macintosh program for storage and analysis of experimental genetic mapping data. Mamm Genome 4: 303-313.
14. Marcel TC (2007) Genetic architecture of basal resistance of barley to Puccinia hordei. Dissertation, Wageningen University.
15. Marcel TC, Aghnoum R, Durand J, Varshney RK, Niks RE (2007a) Dissection of the Barley 2L1. 0 Region Carrying the 'Laevigatum' quantitative resistance gene to leaf rust using near-isogenic lines (NILs) and sub-NILs. Mol Plant Microbe Interact 20: 1604-1615. doi: 10. 1094/MPMI-20-12-1604.
16. Marcel TC, Varshney RK, Barbieri M, Jafary H, de Kock MJD, Graner A, Niks RE (2007b) A high-density consensus map of barley to compare the distribution of QTLs for partial resistance to Puccinia hordei and of defence gene homologues. Theor Appl Genet 114: 487-500. doi: 10. 1007/s00122-006-0448-2.
17. Marcel TC, Gorguet B, Ta MT, Kohutova Z, Vels A, Niks RE (2008) Isolate specificity of quantitative trait loci for partial resistance of barley to Puccinia hordei confirmed in mapping populations and near-isogenic lines. New Phytol 177: 743-755. doi: 10. 1111/j. 1469-8137. 2007. 02298. x.
18. Martins-Lopes P, Zhang H, Koebner R (2001) Detection of single nucleotide mutations in wheat using single strand conformation polymorphism gels. Plant Mol Biol Rep 19: 159-162.
19. Park RF (2003) Pathogenic specialization and pathotype distribution of Puccinia hordei in Australia, 1992-2001. Plant Dis 87: 1311-1316.
20. Park RF (2008) Breeding cereals for rust resistance in Australia. Plant Pathol 57: 591-602.
21. Park RF, Karakousis A (2002) Characterization and mapping of gene Rph19 conferring resistance to Puccinia hordei in the cultivar 'Reka 1' and several Australian barleys. Plant Breed 121: 232-236.
22. Peterson RF, Campbell AB, Hannah AE (1948) A diagrammatic scale for estimating rust severity on leaves and stems of cereals. Can J Res C 26: 496-500.
23. Qi XQ, Stam P, Lindhout P (1998a) Use of locus-specific AFLP markers to construct a high-density molecular map in barley. Theor Appl Genet 96: 376-384.
24. Qi XQ, Niks RE, Stam P, Lindhout P (1998b) Identification of QTLs for partial resistance to leaf rust (Puccinia hordei) in barley. Theor Appl Genet 96: 1205-1215.
25. Qi XQ, Jiang G, Chen W, Niks RE, Stam P, Lindhout P (1999) Isolate-specific QTLs for partial resistance to Puccinia hordei in barley. Theor Appl Genet 99: 877-884.
26. Qi XQ, Fufa F, Sijtsma D, Niks RE, Lindhout P, Stam P (2000) The evidence for abundance of QTLs for partial resistance to Puccinia hordei on the barley genome. Mol Breed 6: 1-9.
27. Rogowsky PM, Guidet FLY, Langridge P, Shepherd KW, Koebner RMD (1991) Isolation and characterization of wheat-rye recombinants involving chromosome arm 1DS of wheat. Theor Appl Genet 82: 537-544.
28. Savov A, Angelicheva D, Jordanova A, Eigel A, Kalaydjieva L (1992) High percentage acrylamide gels improve resolution in SSCP analysis. Nucleic Acids Res 20: 6741-6742. doi: 10. 1093/nar/20. 24. 6741.
29. Sun X, Bai G, Carver B (2009) Molecular markers for wheat leaf rust resistance gene Lr41. Mol Breed 23: 311-321.
30. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25: 4876-4882. doi: 10. 1093/nar/25. 24. 4876.
31. van Os H, Stam P, Visser R, van Eck H (2005) RECORD: a novel method for ordering loci on a genetic linkage map. Theor Appl Genet 112: 30-40.
32. Varshney RK, Hoisington DA, Tyagi AK (2006) Advances in cereal genomics and applications in crop breeding. Trends Biotechnol 24: 490-499. doi: 10. 1016/j. tibtech. 2006. 08. 006.
33. Woldeab G, Fininsa C, Singh H, Yuen J, Crossa J (2007) Variation in partial resistance to barley leaf rust (Puccinia hordei) and agronomic characters of Ethiopian landrace lines. Euphytica 158: 139-151.
34. Zigtkiewicz E, Yotova V, Jarnik M, Korab-Laskowska M, Kidd KK, Modiano D, Scozzari R, Stoneking M, Tishkoff S, Batzer M, Labuda D (1997) Nuclear DNA diversity in worldwide distributed human populations. Gene 205: 161-171.