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Volumn 18, Issue 11, 2011, Pages 1383-1397

Computing fragmentation trees from metabolite multiple mass spectrometry data

Author keywords

computational mass spectrometry; hardness results; metabolomics; multiple stage mass spectrometry; parameterized algorithms

Indexed keywords

ALGORITHM; ARTICLE; CHEMICAL MODEL; MASS SPECTROMETRY; METABOLOME; METHODOLOGY; MOLECULAR WEIGHT; STANDARD; STATISTICAL ANALYSIS;

EID: 80955139621     PISSN: 10665277     EISSN: None     Source Type: Journal    
DOI: 10.1089/cmb.2011.0168     Document Type: Article
Times cited : (24)

References (21)
  • 1
    • 0032058198 scopus 로고    scopus 로고
    • Proof Verification and the Hardness of Approximation Problems
    • Arora, S., Lund, C., Motwani, R., et al. 1998. Proof verification and the hardness of approximation problems. J. ACM 45, 501-555. (Pubitemid 128506634)
    • (1998) Journal of the ACM , vol.45 , Issue.3 , pp. 501-555
    • Arora, S.1    Lund, C.2    Motwani, R.3    Sudan, M.4    Szegedy, M.5
  • 2
    • 51449083131 scopus 로고    scopus 로고
    • Multi-spectra peptide sequencing and its applications to multistage mass spectrometry
    • Bandeira, N., Olsen, J. V., Mann, J. V., et al. 2008. Multi-spectra peptide sequencing and its applications to multistage mass spectrometry. Bioinformatics 24, i416-i423.
    • (2008) Bioinformatics , vol.24
    • Bandeira, N.1    Olsen, J.V.2    Mann, J.V.3
  • 3
    • 33846820200 scopus 로고    scopus 로고
    • Computational complexity of some restricted instances of 3-SAT
    • DOI 10.1016/j.dam.2006.07.009, PII S0166218X06004677
    • Berman, P., Karpinski, M., and Scott, A. D. 2007. Computational complexity of some restricted instances of 3-SAT. Discrete Appl. Math. 155, 649-653. (Pubitemid 46209326)
    • (2007) Discrete Applied Mathematics , vol.155 , Issue.5 , pp. 649-653
    • Berman, P.1    Karpinski, M.2    Scott, A.D.3
  • 5
    • 34547463620 scopus 로고    scopus 로고
    • A fast and simple algorithm for the money changing problem
    • DOI 10.1007/s00453-007-0162-8
    • Bocker, S., and Liptak, Z. 2007. A fast and simple algorithm for the Money Changing Problem. Algorithmica 48, 413-432. (Pubitemid 47170739)
    • (2007) Algorithmica (New York) , vol.48 , Issue.4 , pp. 413-432
    • Bocker, S.1    Liptak, Z.2
  • 6
    • 49549101405 scopus 로고    scopus 로고
    • Towards de novo identification of metabolites by analyzing tandem mass spectra
    • Bocker, S., and Rasche, F. 2008. Towards de novo identification of metabolites by analyzing tandem mass spectra. Bioinformatics 24, I49-I55.
    • (2008) Bioinformatics , vol.24
    • Bocker, S.1    Rasche, F.2
  • 7
    • 0000666661 scopus 로고
    • On the shortest arborescence of a directed graph
    • Chu, Y., and Liu, T. 1965. On the shortest arborescence of a directed graph. Sci. Sinica 14, 1396-1400.
    • (1965) Sci. Sinica , vol.14 , pp. 1396-1400
    • Chu, Y.1    Liu, T.2
  • 8
    • 79551603185 scopus 로고    scopus 로고
    • Complexity issues in vertex-colored graph pattern matching
    • Dondi, R., Fertin, G., and Vialette, S. 2011. Complexity issues in vertex-colored graph pattern matching. J. Discrete Algorithms 9, 82-99.
    • (2011) J. Discrete Algorithms , vol.9 , pp. 82-99
    • Dondi, R.1    Fertin, G.2    Vialette, S.3
  • 10
    • 38149138056 scopus 로고    scopus 로고
    • Sharp tractability borderlines for finding connected motifs in vertex-colored graphs
    • Fellows, M., Fertin, G., Hermelin, D., et al. 2007. Sharp tractability borderlines for finding connected motifs in vertex-colored graphs. Lect. Notes Comput. Sci. 4596 340-351.
    • (2007) Lect. Notes Comput. Sci. , vol.4596 , pp. 340-351
    • Fellows, M.1    Fertin, G.2    Hermelin, D.3
  • 12
    • 56149101337 scopus 로고    scopus 로고
    • FiD: A software for ab initio structural identification of product ions from tandem mass spectrometric data
    • Heinonen, M., Rantanen, A., Mielikainen, T., et al. 2008. FiD: a software for ab initio structural identification of product ions from tandem mass spectrometric data. Rapid Commun. Mass Spectrom. 2219, 3043-3052.
    • (2008) Rapid Commun. Mass Spectrom , vol.2219 , pp. 3043-3052
    • Heinonen, M.1    Rantanen, A.2    Mielikainen, T.3
  • 13
    • 49049121462 scopus 로고    scopus 로고
    • Mass spectral metabonomics beyond elemental formula: Chemical database querying by matching experimental with computational fragmentation spectra
    • Hill, D. W., Kertesz, T. M., Fontaine, D., et al. 2008. Mass spectral metabonomics beyond elemental formula: chemical database querying by matching experimental with computational fragmentation spectra. Anal. Chem. 80, 5574-5582.
    • (2008) Anal. Chem. , vol.80 , pp. 5574-5582
    • Hill, D.W.1    Kertesz, T.M.2    Fontaine, D.3
  • 15
    • 0028542974 scopus 로고
    • An efficient transitive closure algorithm for cyclic digraphs
    • DOI 10.1016/0020-0190(94)90128-7
    • Nuutila, E. 1994. An efficient transitive closure algorithm for cyclic digraphs. Inform. Process. Lett. 52, 207-213. (Pubitemid 124013243)
    • (1994) Information Processing Letters , vol.52 , Issue.4 , pp. 207-213
    • Nuutila, E.1
  • 16
    • 65649117746 scopus 로고    scopus 로고
    • On the inter-instrument and inter-laboratory transferability of a tandem mass spectral reference library: 1. Results of an Austrian multicenter study
    • Oberacher, H., Pavlic, M., Libiseller, K., et al. 2009a. On the inter-instrument and inter-laboratory transferability of a tandem mass spectral reference library: 1. Results of an Austrian multicenter study. J. Mass Spectrom. 44, 485-493.
    • (2009) J. Mass Spectrom. , vol.44 , pp. 485-493
    • Oberacher, H.1    Pavlic, M.2    Libiseller, K.3
  • 17
    • 65649115837 scopus 로고    scopus 로고
    • On the inter-instrument and the inter-laboratory transferability of a tandem mass spectral reference library: 2. Optimization and characterization of the search algorithm
    • Oberacher, H., Pavlic, M., Libiseller, K., et al. 2009b. On the inter-instrument and the inter-laboratory transferability of a tandem mass spectral reference library: 2. Optimization and characterization of the search algorithm. J. Mass Spectrom. 44, 494-502.
    • (2009) J. Mass Spectrom. , vol.44 , pp. 494-502
    • Oberacher, H.1    Pavlic, M.2    Libiseller, K.3
  • 18
    • 0026366408 scopus 로고
    • Optimization, approximation, and complexity classes
    • Papadimitriou, C., and Yannakakis, M. 1991. Optimization, approximation, and complexity classes. J. Comput. Syst. Sci. 43, 425-440.
    • (1991) J. Comput. Syst. Sci. , vol.43 , pp. 425-440
    • Papadimitriou, C.1    Yannakakis, M.2
  • 19
    • 60549107218 scopus 로고    scopus 로고
    • In silico methods for predicting metabolism and mass fragmentation applied to quetiapine in liquid chromatography/time-of-flight mass spectrometry urine drug screening
    • Pelander, A., Tyrkko, E., and Ojanpera, I. 2009. In silico methods for predicting metabolism and mass fragmentation applied to quetiapine in liquid chromatography/time-of-flight mass spectrometry urine drug screening. Rapid Commun. Mass Spectrom. 23, 506-514.
    • (2009) Rapid Commun. Mass Spectrom. , vol.23 , pp. 506-514
    • Pelander, A.1    Tyrkko, E.2    Ojanpera, I.3
  • 20
    • 79951640091 scopus 로고    scopus 로고
    • Computing fragmentation trees from tandem mass spectrometry data
    • Rasche, F., Svatos, A., Maddula, R. K., et al. 2011. Computing fragmentation trees from tandem mass spectrometry data, Anal. Chem. 83, 1243-1251.
    • (2011) Anal. Chem. , vol.83 , pp. 1243-1251
    • Rasche, F.1    Svatos, A.2    Maddula, R.K.3
  • 21
    • 60649112635 scopus 로고    scopus 로고
    • Determination of ion structures in structurally related compounds using precursor ion fingerprinting
    • Sheldon, M. T., Mistrik, R., and Croley, T. R. 2009. Determination of ion structures in structurally related compounds using precursor ion fingerprinting. J. Am. Soc. Mass Spectrom. 20, 370-376.
    • (2009) J. Am. Soc. Mass Spectrom. , vol.20 , pp. 370-376
    • Sheldon, M.T.1    Mistrik, R.2    Croley, T.R.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.