메뉴 건너뛰기




Volumn 18, Issue 11, 2011, Pages 1437-1448

Optimally orienting physical networks

Author keywords

integer linear program; mixed graph; network orientation; protein DNA interaction; protein protein interaction

Indexed keywords

SACCHAROMYCES CEREVISIAE PROTEIN;

EID: 80955136736     PISSN: 10665277     EISSN: None     Source Type: Journal    
DOI: 10.1089/cmb.2011.0163     Document Type: Article
Times cited : (14)

References (20)
  • 1
    • 56649085295 scopus 로고    scopus 로고
    • A note on orientations of mixed graphs
    • Arkin, E. M., and Hassin, R. 2002. A note on orientations of mixed graphs. Discrete Appl. Math. 116, 271-278.
    • (2002) Discrete Appl. Math. , vol.116 , pp. 271-278
    • Arkin, E.M.1    Hassin, R.2
  • 3
    • 0000411366 scopus 로고
    • Robbins's theorem for mixed multigraphs
    • Boesch, F., and Tindell, R. 1980. Robbins's theorem for mixed multigraphs. Am. Math. Monthly 87, 716-719.
    • (1980) Am. Math. Monthly , vol.87 , pp. 716-719
    • Boesch, F.1    Tindell, R.2
  • 4
    • 77953077420 scopus 로고    scopus 로고
    • A global protein kinase and phosphatase interaction network in yeast
    • Breitkreutz, A., Choi, H., Sharom, J. R., et al. 2010. A global protein kinase and phosphatase interaction network in yeast. Science 328, 1043-1046.
    • (2010) Science , vol.328 , pp. 1043-1046
    • Breitkreutz, A.1    Choi, H.2    Sharom, J.R.3
  • 5
    • 0022413443 scopus 로고
    • Strongly connected orientations of mixed multigraphs
    • Chung, F. R. K., Garey, M. R., and Tarjan, R. E. 1985. Strongly connected orientations of mixed multigraphs. Networks 15, 477-484.
    • (1985) Networks , vol.15 , pp. 477-484
    • Chung, F.R.K.1    Garey, M.R.2    Tarjan, R.E.3
  • 6
    • 79953809656 scopus 로고    scopus 로고
    • Exploiting bounded signal flow for graph orientation based on causeeffect pairs
    • Dorn, B., Hüffner, F., Krüger, D., et al. 2011. Exploiting bounded signal flow for graph orientation based on causeeffect pairs. Lect. Notes Comput. Sci. 6595, 104-115.
    • (2011) Lect. Notes Comput. Sci. , vol.6595 , pp. 104-115
    • Dorn, B.1    Hüffner, F.2    Krüger, D.3
  • 8
    • 0024406857 scopus 로고
    • A novel genetic system to detect protein-protein interactions
    • DOI 10.1038/340245a0
    • Fields, S., and Song, O. 1989. A novel genetic system to detect protein-protein interactions. Nature 340, 245-246. (Pubitemid 19171591)
    • (1989) Nature , vol.340 , Issue.6230 , pp. 245-246
    • Fields, S.1    Song, O.-K.2
  • 9
    • 78049460830 scopus 로고    scopus 로고
    • Improved orientations of physical networks
    • Gamzu, I., Segev, D., and Sharan, R. 2010. Improved orientations of physical networks. Lect. Notes Comput. Sci. 6293, 215-225.
    • (2010) Lect. Notes Comput. Sci. , vol.6293 , pp. 215-225
    • Gamzu, I.1    Segev, D.2    Sharan, R.3
  • 11
    • 79952321999 scopus 로고    scopus 로고
    • Discovering pathways by orienting edges in protein interaction networks
    • Gitter, A., Klein-Seetharaman, J., Gupta, A., et al. 2011. Discovering pathways by orienting edges in protein interaction networks. Nucleic Acids Res. 39, e22.
    • (2011) Nucleic Acids Res. , vol.39
    • Gitter, A.1    Klein-Seetharaman, J.2    Gupta, A.3
  • 13
    • 33645769260 scopus 로고    scopus 로고
    • An improved map of conserved regulatory sites for Saccharomyces cerevisiae
    • MacIsaac, K., Wang, T., Gordon, D. B., et al. 2006. An improved map of conserved regulatory sites for Saccharomyces cerevisiae. BMC Bioinform. 7, 113.
    • (2006) BMC Bioinform , vol.7 , pp. 113
    • MacIsaac, K.1    Wang, T.2    Gordon, D.B.3
  • 14
    • 56649106363 scopus 로고    scopus 로고
    • An algorithm for orienting graphs based on cause-effect pairs and its applications to orienting protein networks
    • Medvedovsky, A., Bafna, V., Zwick, U., et al. 2008. An algorithm for orienting graphs based on cause-effect pairs and its applications to orienting protein networks. Lect. Notes Comput. Sci. 5251, 222-232.
    • (2008) Lect. Notes Comput. Sci. , vol.5251 , pp. 222-232
    • Medvedovsky, A.1    Bafna, V.2    Zwick, U.3
  • 15
    • 34547830859 scopus 로고    scopus 로고
    • SPINE: A framework for signaling-regulatory pathway inference from cause-effect experiments
    • DOI 10.1093/bioinformatics/btm170
    • Ourfali, O., Shlomi, T., Ideker, T., et al. 2007. SPINE: a framework for signaling-regulatory pathway inference from cause-effect experiments. Bioinformatics 23, i359-i366. (Pubitemid 47244421)
    • (2007) Bioinformatics , vol.23 , Issue.13
    • Ourfali, O.1    Shlomi, T.2    Ideker, T.3    Ruppin, E.4    Sharan, R.5
  • 16
    • 77955817629 scopus 로고    scopus 로고
    • Comprehensive reanalysis of transcription factor knockout expression data in Saccharomyces cerevisiae reveals many new targets
    • Reimand, J., Vaquerizas, J. M., Todd, A. E., et al. 2010. Comprehensive reanalysis of transcription factor knockout expression data in Saccharomyces cerevisiae reveals many new targets. Nucleic Acids Res. 38, 4768-4777.
    • (2010) Nucleic Acids Res. , vol.38 , pp. 4768-4777
    • Reimand, J.1    Vaquerizas, J.M.2    Todd, A.E.3
  • 18
    • 0001790593 scopus 로고
    • Depth-first search and linear graph algorithms
    • Tarjan, R. 1972. Depth-first search and linear graph algorithms. SIAM J. Comput. 1, 146-160.
    • (1972) SIAM J. Comput. , vol.1 , pp. 146-160
    • Tarjan, R.1
  • 20
    • 53349117774 scopus 로고    scopus 로고
    • High-quality binary protein interaction map of the yeast interactome network
    • Yu, H., Braun, P., Yildirim, M. A., et al. 2008. High-quality binary protein interaction map of the yeast interactome network. Science 322, 104-110.
    • (2008) Science , vol.322 , pp. 104-110
    • Yu, H.1    Braun, P.2    Yildirim, M.A.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.