-
1
-
-
77956011744
-
An information theoretic thresholding method for detecting protein colocalizations in stacks of fluorescence images
-
A. Barysenka, A. W. M. Dress, and W. Schubert. An information theoretic thresholding method for detecting protein colocalizations in stacks of fluorescence images. J Biotechnol, 149(3):127-131, 2010.
-
(2010)
J Biotechnol
, vol.149
, Issue.3
, pp. 127-131
-
-
Barysenka, A.1
Dress, A.W.M.2
Schubert, W.3
-
2
-
-
78649858759
-
Toponome imaging system: In situ protein network mapping in normal and cancerous colon from the same patient reveals more than five-thousand cancer specific protein clusters and their subcellular annotation by using a three symbol code
-
S. Bhattacharya, G. Mathew, E. Ruban, D. B. A. Epstein, A. Krusche, R. Hillert,W. Schubert, and M. Khan. Toponome imaging system: in situ protein network mapping in normal and cancerous colon from the same patient reveals more than five-thousand cancer specific protein clusters and their subcellular annotation by using a three symbol code. J Proteome Res, 9(12):6112-6125, 2010.
-
(2010)
J Proteome Res
, vol.9
, Issue.12
, pp. 6112-6125
-
-
Bhattacharya, S.1
Mathew, G.2
Ruban, E.3
Epstein, D.B.A.4
Krusche, A.5
Hillert, R.6
Schubert, W.7
Khan, M.8
-
4
-
-
84893774779
-
Graphical perception: Theory, experimentation, and application to the development of graphical methods
-
W. S. Cleveland and R. McGill. Graphical perception: Theory, experimentation, and application to the development of graphical methods. J Am Stat Assoc, 79(387):531-554, 1984.
-
(1984)
J Am Stat Assoc
, vol.79
, Issue.387
, pp. 531-554
-
-
Cleveland, W.S.1
McGill, R.2
-
5
-
-
33845644113
-
Visualization and analysis of large data collections: A case study applied to confocal microscopy data
-
DOI 10.1109/TVCG.2006.195
-
W. de Leeuw, P. J. Verschure, and R. van Liere. Visualization and analysis of large data collections: a case study applied to confocal microscopy data. IEEE Trans Visual Comput Graph, 12(5):1251-1258, 2006. (Pubitemid 44955662)
-
(2006)
IEEE Transactions on Visualization and Computer Graphics
, vol.12
, Issue.5
, pp. 1251-1258
-
-
De Leeuw, W.1
Verschure, P.J.2
Van Liere, R.3
-
6
-
-
72849131352
-
SpRay: A visual analytics approach for gene expression data
-
J. Dietzsch, J. Heinrich, K. Nieselt, and D. Bartz. SpRay: A visual analytics approach for gene expression data. In Proc. IEEE Symp. Visual Analytics Science and Technology VAST, pages 179-186, 2009.
-
(2009)
Proc. IEEE Symp. Visual Analytics Science and Technology VAST
, pp. 179-186
-
-
Dietzsch, J.1
Heinrich, J.2
Nieselt, K.3
Bartz, D.4
-
7
-
-
1642443563
-
Interactive feature specification for focus+context visualization of complex simulation data
-
H. Doleisch, M. Gasser, and H. Hauser. Interactive feature specification for focus+context visualization of complex simulation data. In Proc. of IEEE TCVG-EUROGRAPHICS Symp. on Vis., pages 239-248, 2003.
-
(2003)
Proc. of IEEE TCVG-EUROGRAPHICS Symp. on Vis.
, pp. 239-248
-
-
Doleisch, H.1
Gasser, M.2
Hauser, H.3
-
8
-
-
11244292796
-
Smooth brushing for focus+context visualization of simulation data in 3D
-
H. Doleisch and H. Hauser. Smooth brushing for focus+context visualization of simulation data in 3D. Journal of WSCG, 10(1):147-154, 2002.
-
(2002)
Journal of WSCG
, vol.10
, Issue.1
, pp. 147-154
-
-
Doleisch, H.1
Hauser, H.2
-
9
-
-
13844255250
-
Poisson numbers and poisson distributions in subset surprisology
-
DOI 10.1007/s00026-004-0234-2
-
A. Dress, T. Lokot, L. Pustyl'nikov, and W. Schubert. Poisson numbers and poisson distributions in subset surprisology. Annals of Combinatorics, 8:473-485, 2005. (Pubitemid 40251123)
-
(2005)
Annals of Combinatorics
, vol.8
, Issue.4
, pp. 473-485
-
-
Dress, A.W.M.1
Lokot, T.2
Pustyl'nikov, L.D.3
Schubert, W.4
-
10
-
-
38449097642
-
Fluorescence detection of protein clusters in individual cells and tissue sections by using toponome imaging system: Sample preparation and measuring procedures
-
DOI 10.1038/nprot.2007.320, PII NPROT.2007.320
-
M. Friedenberger, M. Bode, A. Krusche, and W. Schubert. Fluorescence detection of protein clusters in individual cells and tissue sections by using toponome imaging system: sample preparation and measuring procedures. Nat Protoc, 2(9):2285-2294, 2007. (Pubitemid 351565866)
-
(2007)
Nature Protocols
, vol.2
, Issue.9
, pp. 2285-2294
-
-
Friedenberger, M.1
Bode, M.2
Krusche, A.3
Schubert, W.4
-
13
-
-
38349039549
-
Improved circular layouts
-
M. Kaufmann and D. Wagner, editors Springer
-
E. Gansner and Y. Koren. Improved circular layouts. In M. Kaufmann and D. Wagner, editors, Graph Drawing, volume 4372 of Lecture Notes in Computer Science, pages 386-398. Springer, 2007.
-
(2007)
Graph Drawing, Volume 4372 of Lecture Notes in Computer Science
, pp. 386-398
-
-
Gansner, E.1
Koren, Y.2
-
14
-
-
77649252269
-
Visualization of omics data for systems biology
-
N. Gehlenborg, S. I. O'Donoghue, N. S. Baliga, A. Goesmann, M. A. Hibbs, H. Kitano, O. Kohlbacher, H. Neuweger, R. Schneider, D. Tenenbaum, and A.-C. Gavin. Visualization of omics data for systems biology. Nat Methods, 7(3 Suppl):S56-S68, 2010.
-
(2010)
Nat Methods
, vol.7
, Issue.3 SUPPL.
-
-
Gehlenborg, N.1
O'Donoghue, S.I.2
Baliga, N.S.3
Goesmann, A.4
Hibbs, M.A.5
Kitano, H.6
Kohlbacher, O.7
Neuweger, H.8
Schneider, R.9
Tenenbaum, D.10
Gavin, A.-C.11
-
16
-
-
33845640864
-
Hierarchical edge bundles: Visualization of adjacency relations in hierarchical data
-
DOI 10.1109/TVCG.2006.147
-
D. Holten. Hierarchical edge bundles: Visualization of adjacency relations in hierarchical data. IEEE Trans Visual Comput Graph, 12(5):741-748, 2006. (Pubitemid 44955599)
-
(2006)
IEEE Transactions on Visualization and Computer Graphics
, vol.12
, Issue.5
, pp. 741-748
-
-
Holten, D.1
-
17
-
-
68549085159
-
Force-directed edge bundling for graph visualization
-
D. Holten and J. J. van Wijk. Force-directed edge bundling for graph visualization. Comput Graph Forum, 28(3):983-990, 2009.
-
(2009)
Comput Graph Forum
, vol.28
, Issue.3
, pp. 983-990
-
-
Holten, D.1
Van Wijk, J.J.2
-
18
-
-
2942609149
-
VisANT: An online visualization and analysis tool for biological interaction data
-
Z. Hu, J. Mellor, J. Wu, and C. DeLisi. VisANT: an online visualization and analysis tool for biological interaction data. BMC Bioinformatics, 5:17, 2004.
-
(2004)
BMC Bioinformatics
, vol.5
, pp. 17
-
-
Hu, Z.1
Mellor, J.2
Wu, J.3
Delisi, C.4
-
20
-
-
53149128029
-
A four-level focus+context approach to interactive visual analysis of temporal features in large scientific data
-
P. Muigg, J. Kehrer, S. Oeltze, H. Piringer, H. Doleisch, B. Preim, and H. Hauser. A four-level focus+context approach to interactive visual analysis of temporal features in large scientific data. Comput Graph Forum, 27(3):775-782, 2008.
-
(2008)
Comput Graph Forum
, vol.27
, Issue.3
, pp. 775-782
-
-
Muigg, P.1
Kehrer, J.2
Oeltze, S.3
Piringer, H.4
Doleisch, H.5
Preim, B.6
Hauser, H.7
-
21
-
-
35948978096
-
Interactive visual analysis of perfusion data
-
DOI 10.1109/TVCG.2007.70569
-
S. Oeltze, H. Doleisch, H. Hauser, P. Muigg, and B. Preim. Interactive visual analysis of perfusion data. IEEE Trans Visual Comput Graph, 13(6):1392-1399, 2007. (Pubitemid 350076613)
-
(2007)
IEEE Transactions on Visualization and Computer Graphics
, vol.13
, Issue.6
, pp. 1392-1399
-
-
Oeltze, S.1
Doleisch, H.2
Hauser, H.3
Muigg, P.4
Preim, B.5
-
22
-
-
60749103244
-
Arena3D: Visualization of biological networks in 3D
-
G. A. Pavlopoulos, S. I. O'Donoghue, V. P. Satagopam, T. G. Soldatos, E. Pafilis, and R. Schneider. Arena3D: visualization of biological networks in 3D. BMC Syst Biol, 2:104, 2008.
-
(2008)
BMC Syst Biol
, vol.2
, pp. 104
-
-
Pavlopoulos, G.A.1
O'Donoghue, S.I.2
Satagopam, V.P.3
Soldatos, T.G.4
Pafilis, E.5
Schneider, R.6
-
23
-
-
3543069879
-
Seventeen-colour flow cytometry: Unravelling the immune system
-
S. P. Perfetto, P. K. Chattopadhyay, and M. Roederer. Seventeen-colour flow cytometry: unravelling the immune system. Nat Rev Immunol, 4(8):648-655, 2004. (Pubitemid 39025050)
-
(2004)
Nature Reviews Immunology
, vol.4
, Issue.8
, pp. 648-655
-
-
Perfetto, S.P.1
Chattopadhyay, P.K.2
Roederer, M.3
-
24
-
-
0028013807
-
The table lens: Merging graphical and symbolic representations in an interactive focus + context visualization for tabular information
-
R. Rao and S. K. Card. The table lens: merging graphical and symbolic representations in an interactive focus + context visualization for tabular information. In Proc. of the ACM CHI Conf. on Human Factors in Computing Systems, pages 318-322, 1994.
-
(1994)
Proc. of the ACM CHI Conf. on Human Factors in Computing Systems
, pp. 318-322
-
-
Rao, R.1
Card, S.K.2
-
28
-
-
0141608691
-
Topological proteomics, toponomics, melk-technology
-
W. Schubert. Topological proteomics, toponomics, melk-technology. Adv Biochem Eng Biotechnol, 83:189-209, 2003.
-
(2003)
Adv Biochem Eng Biotechnol
, vol.83
, pp. 189-209
-
-
Schubert, W.1
-
29
-
-
34250750898
-
A three-symbol code for organized proteomes based on cyclical imaging of protein locations
-
DOI 10.1002/cyto.a.20281
-
W. Schubert. A three-symbol code for organized proteomes based on cyclical imaging of protein locations. Cytometry A, 71(6):352-360, 2007. (Pubitemid 46953177)
-
(2007)
Cytometry Part A
, vol.71
, Issue.6
, pp. 352-360
-
-
Schubert, W.1
-
30
-
-
77956909873
-
On the origin of cell functions encoded in the toponome
-
W. Schubert. On the origin of cell functions encoded in the toponome. J Biotechnol, 149(4):252-259, 2010.
-
(2010)
J Biotechnol
, vol.149
, Issue.4
, pp. 252-259
-
-
Schubert, W.1
-
31
-
-
43449120439
-
Toponomics and neurotoponomics: A new way to medical systems biology
-
DOI 10.1586/14789450.5.2.361
-
W. Schubert, M. Bode, R. Hillert, A. Krusche, and M. Friedenberger. Toponomics and neurotoponomics: a new way to medical systems biology. Expert Rev Proteomics, 5(2):361-369, 2008. (Pubitemid 351670937)
-
(2008)
Expert Review of Proteomics
, vol.5
, Issue.2
, pp. 361-369
-
-
Schubert, W.1
Bode, M.2
Hillert, R.3
Krusche, A.4
Friedenberger, M.5
-
32
-
-
33749867157
-
Analyzing proteome topology and function by automated multidimensional fluorescence microscopy
-
DOI 10.1038/nbt1250, PII NBT1250
-
W. Schubert, B. Bonnekoh, A. J. Pommer, L. Philipsen, R. Bckelmann, Y. Malykh, H. Gollnick, M. Friedenberger, M. Bode, and A. W. M. Dress. Analyzing proteome topology and function by automated multidimensional fluorescence microscopy. Nat Biotechnol, 24(10):1270-1278, 2006. (Pubitemid 44564774)
-
(2006)
Nature Biotechnology
, vol.24
, Issue.10
, pp. 1270-1278
-
-
Schubert, W.1
Bonnekoh, B.2
Pommer, A.J.3
Philipsen, L.4
Bockelmann, R.5
Malykh, Y.6
Gollnick, H.7
Friedenberger, M.8
Bode, M.9
Dress, A.W.M.10
-
33
-
-
53349162389
-
Functional architecture of the cell nucleus: Towards comprehensive toponome reference maps of apoptosis
-
W. Schubert, M. Friedenberger, M. Bode, A. Krusche, and R. Hillert. Functional architecture of the cell nucleus: towards comprehensive toponome reference maps of apoptosis. Biochim Biophys Acta, 1783(11):2080-2088, 2008.
-
(2008)
Biochim Biophys Acta
, vol.1783
, Issue.11
, pp. 2080-2088
-
-
Schubert, W.1
Friedenberger, M.2
Bode, M.3
Krusche, A.4
Hillert, R.5
-
34
-
-
67049119822
-
Toponome mapping in prostate cancer: Detection of 2000 cell surface protein clusters in a single tissue section and cell type specific annotation by using a three symbol code
-
W. Schubert, A. Gieseler, A. Krusche, and R. Hillert. Toponome mapping in prostate cancer: detection of 2000 cell surface protein clusters in a single tissue section and cell type specific annotation by using a three symbol code. J Proteome Res, 8(6):2696-2707, 2009.
-
(2009)
J Proteome Res
, vol.8
, Issue.6
, pp. 2696-2707
-
-
Schubert, W.1
Gieseler, A.2
Krusche, A.3
Hillert, R.4
-
35
-
-
80053602482
-
Visual analysis of bipartite biological networks
-
H.-J. Schulz, M. John, A. Unger, and H. Schumann. Visual analysis of bipartite biological networks. In VCBM'08: Proc. of the Eurographics Workshop on Visual Computing for Biomedicine, pages 135-142, 2008.
-
(2008)
VCBM'08: Proc. of the Eurographics Workshop on Visual Computing for Biomedicine
, pp. 135-142
-
-
Schulz, H.-J.1
John, M.2
Unger, A.3
Schumann, H.4
-
36
-
-
0242490780
-
Cytoscape: A software Environment for integrated models of biomolecular interaction networks
-
DOI 10.1101/gr.1239303
-
P. Shannon, A. Markiel, O. Ozier, N. S. Baliga, J. T. Wang, D. Ramage, N. Amin, B. Schwikowski, and T. Ideker. Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Res, 13(11):2498-2504, 2003. (Pubitemid 37428274)
-
(2003)
Genome Research
, vol.13
, Issue.11
, pp. 2498-2504
-
-
Shannon, P.1
Markiel, A.2
Ozier, O.3
Baliga, N.S.4
Wang, J.T.5
Ramage, D.6
Amin, N.7
Schwikowski, B.8
Ideker, T.9
-
38
-
-
67549148344
-
Visual exploration of threedimensional gene expression using physical views and linked abstract views
-
G. H. Weber, O. Rubel, M.-Y. Huang, A. H. DePace, C. C. Fowlkes, S. V. E. Keranen, C. L. Luengo Hendriks, H. Hagen, D. W. Knowles, J. Malik, M. D. Biggin, and B. Hamann. Visual exploration of threedimensional gene expression using physical views and linked abstract views. IEEE/ACM Trans Comput Biol Bioinformatics, 6(2):296-309, 2009.
-
(2009)
IEEE/ACM Trans Comput Biol Bioinformatics
, vol.6
, Issue.2
, pp. 296-309
-
-
Weber, G.H.1
Rubel, O.2
Huang, M.-Y.3
Depace, A.H.4
Fowlkes, C.C.5
Keranen, S.V.E.6
Luengo Hendriks, C.L.7
Hagen, H.8
Knowles, D.W.9
Malik, J.10
Biggin, M.D.11
Hamann, B.12
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