-
1
-
-
0033954256
-
The protein data bank
-
Berman, H. M., Westbrook, J., Feng, Z., Gilliland, G., Bhat, T. N., Weissig, H., Shindyalov, I. N., & Bourne, P. E. (2000). The protein data bank. Nucleic Acids Res., 28, 235-242.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, P.E.8
-
3
-
-
3543012707
-
Crystallography and NMR system (CNS), a new software suite for macromolecular structure determination
-
Brünger, A. T., Adams, P. D., Clore, G. M., Gros, P., Grosse-Kunstleve, R. W., Jiang, J.-S., Kuszewski, J., Nilges, N., Pannu, N. S., Read, R. J., Rice, L. M., Simonson, T., & Warren, G. L. (1998). Crystallography and NMR system (CNS), a new software suite for macromolecular structure determination. Acta Crystallogr. D, 54, 905-921.
-
(1998)
Acta Crystallogr. D
, vol.54
, pp. 905-921
-
-
Brünger, A.T.1
Adams, P.D.2
Clore, G.M.3
Gros, P.4
Grosse-Kunstleve, R.W.5
Jiang, J.-S.6
Kuszewski, J.7
Nilges, N.8
Pannu, N.S.9
Read, R.J.10
Rice, L.M.11
Simonson, T.12
Warren, G.L.13
-
4
-
-
85133393741
-
-
San Diego: Academic Press
-
Cavanagh, J., Fairbrother, W. J., Palmer, A. G., & Skelton, N. J. (2006). Protein NMR spectroscopy: principals and practice. San Diego: Academic Press.
-
(2006)
Protein NMR Spectroscopy: Principals and Practice
-
-
Cavanagh, J.1
Fairbrother, W.J.2
Palmer, A.G.3
Skelton, N.J.4
-
6
-
-
0030931612
-
Prediction of protein conformational freedom from distance constraints
-
de Groot, B. L., van Aalten, D. M. F., Scheek, R. M., Amadei, A., Vriend, G., & Berendsen, H. J. C. (1997). Prediction of protein conformational freedom from distance constraints. Proteins, Struct. Funct. Genet., 29, 240-251.
-
(1997)
Proteins, Struct. Funct. Genet.
, vol.29
, pp. 240-251
-
-
de Groot, B.L.1
van Aalten, D.M.F.2
Scheek, R.M.3
Amadei, A.4
Vriend, G.5
Berendsen, H.J.C.6
-
8
-
-
31244436296
-
A linear-time algorithm for solving the molecular distance geometry problem with exact inter-atomic distances
-
Dong, Q., & Wu, Z. (2002). A linear-time algorithm for solving the molecular distance geometry problem with exact inter-atomic distances. J. Glob. Optim., 22, 365-375.
-
(2002)
J. Glob. Optim.
, vol.22
, pp. 365-375
-
-
Dong, Q.1
Wu, Z.2
-
9
-
-
84867962761
-
A geometric buildup algorithm for solving the molecular distance geometry problem with sparse distance data
-
Dong, Q., & Wu, Z. (2003). A geometric buildup algorithm for solving the molecular distance geometry problem with sparse distance data. J. Glob. Optim., 26, 321-333.
-
(2003)
J. Glob. Optim.
, vol.26
, pp. 321-333
-
-
Dong, Q.1
Wu, Z.2
-
10
-
-
0032493714
-
Quality assessment of NMR structures: a statistical survey
-
Doreleijers, J. F., Rulmann, J. A. C., & Katein, R. (1998). Quality assessment of NMR structures: a statistical survey. J. Mol. Biol., 281, 149-164.
-
(1998)
J. Mol. Biol.
, vol.281
, pp. 149-164
-
-
Doreleijers, J.F.1
Rulmann, J.A.C.2
Katein, R.3
-
12
-
-
0000802374
-
The approximation of one matrix by another of lower rank
-
Eckart, C., & Young, G. (1936). The approximation of one matrix by another of lower rank. Psychometrika, 1, 211-218.
-
(1936)
Psychometrika
, vol.1
, pp. 211-218
-
-
Eckart, C.1
Young, G.2
-
14
-
-
0000771519
-
An alternating projection algorithm for computing the nearest Euclidean distance matrix
-
Glunt, W., Hayden, T. L., Hong, S., & Wells, J. (1990). An alternating projection algorithm for computing the nearest Euclidean distance matrix. SIAM J. Matrix Anal. Appl., 11, 589-600.
-
(1990)
SIAM J. Matrix Anal. Appl.
, vol.11
, pp. 589-600
-
-
Glunt, W.1
Hayden, T.L.2
Hong, S.3
Wells, J.4
-
16
-
-
0013433957
-
Distance geometry: Theory, algorithms, and chemical applications
-
New York: Wiley
-
Havel, T. F. (1998). Distance geometry: Theory, algorithms, and chemical applications. In Encyclopedia of computational chemistry (pp. 1-20). New York: Wiley.
-
(1998)
Encyclopedia of Computational Chemistry
, pp. 1-20
-
-
Havel, T.F.1
-
17
-
-
0030047142
-
Errors in protein structures
-
Hooft, R. W., Vriend, G., Sander, C., & Abola, E. E. (1996). Errors in protein structures. Nature, 381, 272.
-
(1996)
Nature
, vol.381
, pp. 272
-
-
Hooft, R.W.1
Vriend, G.2
Sander, C.3
Abola, E.E.4
-
18
-
-
0026676167
-
Sampling and efficiency of metric matrix distance geometry: a novel partial metrization algorithm
-
Kuszewski, J., Niles, M., & Brünger, A. T. (1992). Sampling and efficiency of metric matrix distance geometry: a novel partial metrization algorithm. J. Biomol. NMR, 2, 33-56.
-
(1992)
J. Biomol. NMR
, vol.2
, pp. 33-56
-
-
Kuszewski, J.1
Niles, M.2
Brünger, A.T.3
-
20
-
-
0000960523
-
ε-Optimal solutions to distance geometry problems via global continuation
-
P. M. Pardalos, D. Shalloway, and G. Xue (Eds.), Providence: American Mathematical Society
-
Moré, J., & Wu, Z. (1996). ε-Optimal solutions to distance geometry problems via global continuation. In P. M. Pardalos, D. Shalloway, & G. Xue (Eds.), Global minimization of non-convex energy functions: molecular conformation and protein folding (pp. 151-168). Providence: American Mathematical Society.
-
(1996)
Global Minimization of Non-Convex Energy Functions: Molecular Conformation and Protein Folding
, pp. 151-168
-
-
Moré, J.1
Wu, Z.2
-
21
-
-
33645790319
-
Traditional biomolecular structure determination by NMR spectroscopy allows for major errors
-
Nabuurs, S. B., Spronk, C. A., Vuister, G. W., & Vriend, G. (2006). Traditional biomolecular structure determination by NMR spectroscopy allows for major errors. PLoS Comput. Biol., 2, 71-79.
-
(2006)
PLoS Comput. Biol.
, vol.2
, pp. 71-79
-
-
Nabuurs, S.B.1
Spronk, C.A.2
Vuister, G.W.3
Vriend, G.4
-
25
-
-
70350370784
-
A geometric buildup algorithm for the solution of the distance geometry problem using least-squares approximation
-
Sit, A., Wu, Z., & Yuan, Y. (2009). A geometric buildup algorithm for the solution of the distance geometry problem using least-squares approximation. Bull. Math. Biol., 71, 1914-1933.
-
(2009)
Bull. Math. Biol.
, vol.71
, pp. 1914-1933
-
-
Sit, A.1
Wu, Z.2
Yuan, Y.3
-
26
-
-
18844433630
-
Assessing precision and accuracy of protein structures derived from NMR data
-
Snyder, D. A., Bhattacharya, A., Huang, Y. J., & Montelione, G. T. (2005). Assessing precision and accuracy of protein structures derived from NMR data. Proteins, 59, 655-661.
-
(2005)
Proteins
, vol.59
, pp. 655-661
-
-
Snyder, D.A.1
Bhattacharya, A.2
Huang, Y.J.3
Montelione, G.T.4
-
27
-
-
0037357143
-
The precision of NMR structure ensembles revisited
-
Spronk, C. A. E. M., Natuurs, S. B., Bonvin, A. M. J. J., Krieger, E., Vuister, G. W., & Vriend, G. (2003). The precision of NMR structure ensembles revisited. J. Biomol. NMR, 25, 225-234.
-
(2003)
J. Biomol. NMR
, vol.25
, pp. 225-234
-
-
Spronk, C.A.E.M.1
Natuurs, S.B.2
Bonvin, A.M.J.J.3
Krieger, E.4
Vuister, G.W.5
Vriend, G.6
-
28
-
-
33746253304
-
-
Bristol: Institute of Physics
-
Taylor, W. R., & Aszodi, A. (2005). Protein geometry, classification, topology, and symmetry. Bristol: Institute of Physics.
-
(2005)
Protein Geometry, Classification, Topology, and Symmetry
-
-
Taylor, W.R.1
Aszodi, A.2
-
31
-
-
33847251002
-
An updated geometric buildup algorithm for solving the molecular distance geometry problem with sparse distance data
-
Wu, D., & Wu, Z. (2007). An updated geometric buildup algorithm for solving the molecular distance geometry problem with sparse distance data. J. Glob. Optim., 37, 661-673.
-
(2007)
J. Glob. Optim.
, vol.37
, pp. 661-673
-
-
Wu, D.1
Wu, Z.2
-
32
-
-
43249103721
-
Generating rigid protein structures with sparse sets of inter-atomic and inter-residual distances
-
Wu, D., Wu, Z., & Yuan, Y. (2008). Generating rigid protein structures with sparse sets of inter-atomic and inter-residual distances. Optim. Lett., 2, 319-331.
-
(2008)
Optim. Lett.
, vol.2
, pp. 319-331
-
-
Wu, D.1
Wu, Z.2
Yuan, Y.3
-
34
-
-
0002361037
-
Discussion of a set of points in terms of their mutual distances
-
Young, G., & Householder, A. S. (1938). Discussion of a set of points in terms of their mutual distances. Psychometrika, 3, 19-22.
-
(1938)
Psychometrika
, vol.3
, pp. 19-22
-
-
Young, G.1
Householder, A.S.2
|