메뉴 건너뛰기




Volumn 35, Issue 6, 2011, Pages 371-380

Detecting breakdown points in metabolic networks

Author keywords

Breakdown; Graph theory; Perturbation; Resilience; Robustness

Indexed keywords

ALTERNATE PATH; BIOCHEMICAL REACTIONS; BIOLOGICAL NETWORKS; BREAKDOWN; BREAKDOWN POINTS; CARBOHYDRATE METABOLISM; COMPLEX NETWORKS; CONNECTIVITY DISTRIBUTION; DATA SETS; DEGREE OF COMPATIBILITY; DRUG DEVELOPMENT; ENVIRONMENTAL CHANGE; EXTERNAL PERTURBATIONS; GENETIC CHANGES; HOMO SAPIENS; METABOLIC NETWORK; METABOLIC PATHWAYS; MUTATIONAL CHANGES; PERTURBATION; PHYSICAL CHANGES; QUANTITATIVE APPROACH; RESILIENCE; SACCHAROMYCES CEREVISAE;

EID: 80755148581     PISSN: 14769271     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.compbiolchem.2011.10.007     Document Type: Article
Times cited : (4)

References (40)
  • 1
    • 70449369491 scopus 로고    scopus 로고
    • Towards the prediction of essential genes by integration of network topology, cellular localization and biological process information
    • Acencio M.L., and Lemke N. Towards the prediction of essential genes by integration of network topology, cellular localization and biological process information BMC Bioinformatics 10 2009 290
    • (2009) BMC Bioinformatics , vol.10 , pp. 290
    • Acencio, M.L.1    Lemke, N.2
  • 2
    • 40149093604 scopus 로고    scopus 로고
    • Evolution of complex modular biological networks
    • Adami C., and Hintze A. Evolution of complex modular biological networks PLoS Comput. Biol. 4 Suppl. 5 2008 e23
    • (2008) PLoS Comput. Biol. , vol.4 , Issue.SUPPL. 5 , pp. 23
    • Adami, C.1    Hintze, A.2
  • 3
    • 79951526578 scopus 로고    scopus 로고
    • Inferences about the distribution of dominance drawn from yeast gene knockout data
    • Agrawal A.F., and Whitlock M.C. Inferences about the distribution of dominance drawn from yeast gene knockout data Genetics 187 Suppl. 2 2011 553 566
    • (2011) Genetics , vol.187 , Issue.SUPPL. 2 , pp. 553-566
    • Agrawal, A.F.1    Whitlock, M.C.2
  • 4
    • 23344438932 scopus 로고    scopus 로고
    • Scale-freeness and biological networks
    • DOI 10.1093/jb/mvi094
    • Arita M. Scale-freeness and biological networks J. Biochem. 138 Suppl. 1 2005 1 4 (Pubitemid 41105146)
    • (2005) Journal of Biochemistry , vol.138 , Issue.1 , pp. 1-4
    • Arita, M.1
  • 5
    • 0036013593 scopus 로고    scopus 로고
    • Statistical mechanics of complex networks
    • Barabasi A.L., and Albert R. Statistical mechanics of complex networks Rev. Mod. Phys. 74 2002 47 97
    • (2002) Rev. Mod. Phys. , vol.74 , pp. 47-97
    • Barabasi, A.L.1    Albert, R.2
  • 6
    • 0034721164 scopus 로고    scopus 로고
    • Error and attack tolerance of complex networks
    • DOI 10.1038/35019019
    • Barabasi A.L., Albert R., and Jeong H. Error and attack tolerance of complex networks Nature 406 2000 378 382 (Pubitemid 30625551)
    • (2000) Nature , vol.406 , Issue.6794 , pp. 378-382
    • Albert, R.1    Jeong, H.2    Barabasi, A.-L.3
  • 8
    • 58149156532 scopus 로고    scopus 로고
    • Kinetic hybrid models composed of mechanistic and simplified enzymatic rate laws - A promising method for speeding up the kinetic modelling of complex metabolic networks
    • Bulik S., Grimbs S., Huthmacher C., Selbig J., and Holzhtter H.G. Kinetic hybrid models composed of mechanistic and simplified enzymatic rate laws - a promising method for speeding up the kinetic modelling of complex metabolic networks FEBS J. 276 Suppl. 2 2009 410 424
    • (2009) FEBS J. , vol.276 , Issue.SUPPL. 2 , pp. 410-424
    • Bulik, S.1    Grimbs, S.2    Huthmacher, C.3    Selbig, J.4    Holzhtter, H.G.5
  • 9
    • 60549103853 scopus 로고    scopus 로고
    • Complex brain networks: Graph theoretical analysis of structural and functional systems
    • Bullmore E., and Sporns O. Complex brain networks: graph theoretical analysis of structural and functional systems Nature 10 2009 186 198
    • (2009) Nature , vol.10 , pp. 186-198
    • Bullmore, E.1    Sporns, O.2
  • 10
    • 4243939794 scopus 로고    scopus 로고
    • Network robustness and fragility: Percolation on random graphs
    • DOI 10.1103/PhysRevLett.85.5468
    • Callaway D.S., Newman M.E., Strogatz S.H., and Watts D.J. Network robustness and fragility: percolation on random graphs Phys. Rev. Lett. 85 Suppl. 25 2000 5468 5471 (Pubitemid 32089658)
    • (2000) Physical Review Letters , vol.85 , Issue.25 , pp. 5468-5471
    • Callaway, D.S.1    Newman, M.E.J.2    Strogatz, S.H.3    Watts, D.J.4
  • 11
    • 0034323311 scopus 로고    scopus 로고
    • Resilience of the Internet to random breakdowns
    • DOI 10.1103/PhysRevLett.85.4626
    • Cohen R., Erez K., ben-Avraham D., and Havlin S. Resilience of the internet to random breakdowns Phys. Rev. Lett. 85 Suppl. 21 2000 4626 4628 (Pubitemid 32024907)
    • (2000) Physical Review Letters , vol.85 , Issue.21 , pp. 4626-4628
    • Cohen, R.1    Erez, K.2    Ben-Avraham, D.3    Havlin, S.4
  • 12
    • 77949359925 scopus 로고    scopus 로고
    • Can power-law scaling and neuronal avalanches arise from stochastic dynamics?
    • Destexhe A., and Touboul J. Can power-law scaling and neuronal avalanches arise from stochastic dynamics? PLOS One 5 Suppl. 2 2010 e8982
    • (2010) PLOS One , vol.5 , Issue.SUPPL. 2 , pp. 8982
    • Destexhe, A.1    Touboul, J.2
  • 15
    • 78349305350 scopus 로고    scopus 로고
    • Logical and symbolic analysis of robust biological systems
    • Glass L., and Siegelmann H.T. Logical and symbolic analysis of robust biological systems Curr. Opin. Genet. Dev. 20 Suppl. 6 2000 644 649
    • (2000) Curr. Opin. Genet. Dev. , vol.20 , Issue.SUPPL. 6 , pp. 644-649
    • Glass, L.1    Siegelmann, H.T.2
  • 16
    • 54949106905 scopus 로고    scopus 로고
    • 'Knock, and it shall be opened': Knocking out and knocking in to reveal mechanisms of disease and novel therapies
    • Hacking D.F. 'Knock, and it shall be opened': knocking out and knocking in to reveal mechanisms of disease and novel therapies Early Hum. Dev. 84 Suppl. 12 2008 821 827
    • (2008) Early Hum. Dev. , vol.84 , Issue.SUPPL. 12 , pp. 821-827
    • Hacking, D.F.1
  • 17
    • 33750518016 scopus 로고    scopus 로고
    • Interleukin-1β induces sialyl Lewis X on hepatocellular carcinoma HuH-7 cells via enhanced expression of ST3Gal IV and FUT VI gene
    • DOI 10.1016/j.febslet.2006.09.073, PII S0014579306012026
    • Higai K., Miyazaki N., Azuma Y., and Matsumoto K. Interleukin-1beta induces sialyl Lewis X on hepatocellular carcinoma HuH-7 cells via enhanced expression of ST3Gal IV and FUT VI gene FEBS Lett. 580 Suppl. 26 2007 6069 6075 (Pubitemid 44666787)
    • (2006) FEBS Letters , vol.580 , Issue.26 , pp. 6069-6075
    • Higai, K.1    Miyazaki, N.2    Azuma, Y.3    Matsumoto, K.4
  • 18
    • 0034609791 scopus 로고    scopus 로고
    • The large-scale organization of metabolic networks
    • Jeong H., Tombor B., Albert R., Oltvai Z.N., and Barabaasi A.L. The large-scale organization of metabolic networks PNAS 407 Suppl. 5 2000 651 654
    • (2000) PNAS , vol.407 , Issue.SUPPL. 5 , pp. 651-654
    • Jeong, H.1    Tombor, B.2    Albert, R.3    Oltvai, Z.N.4    Barabaasi, A.L.5
  • 21
    • 34548825690 scopus 로고    scopus 로고
    • Towards a theory of biological robustness
    • Kitano H. Towards a theory of biological robustness Mol. Syst. Biol. 3 2007 137
    • (2007) Mol. Syst. Biol. , vol.3 , pp. 137
    • Kitano, H.1
  • 23
    • 74049122828 scopus 로고    scopus 로고
    • Cancer systems biology: A network modeling perspective
    • Kreeger P.K., and Lauffenburger D.A. Cancer systems biology: a network modeling perspective Carcinogenesis 31 Suppl. 1 2010 2 8
    • (2010) Carcinogenesis , vol.31 , Issue.SUPPL. 1 , pp. 2-8
    • Kreeger, P.K.1    Lauffenburger, D.A.2
  • 24
    • 65249191306 scopus 로고    scopus 로고
    • Distributed robustness in cellular networks: Insights from synthetic evolved circuits
    • Macia J., and Sol R.V. Distributed robustness in cellular networks: insights from synthetic evolved circuits J. R. Soc. Interface 6 Suppl. 33 2009 393 400
    • (2009) J. R. Soc. Interface , vol.6 , Issue.SUPPL. 33 , pp. 393-400
    • MacIa, J.1    Sol, R.V.2
  • 25
    • 71549133050 scopus 로고    scopus 로고
    • Enzyme kinetics and computational modeling for systems biology
    • Mendes P., Messiha H., Malys N., and Hoops S. Enzyme kinetics and computational modeling for systems biology Methods Enzymol. 467 2009 583 599
    • (2009) Methods Enzymol. , vol.467 , pp. 583-599
    • Mendes, P.1    Messiha, H.2    Malys, N.3    Hoops, S.4
  • 26
    • 45949088494 scopus 로고    scopus 로고
    • The blind watchmaker network: Scale-freeness and evolution
    • Minnhagen P., and Bernhardsson S. The blind watchmaker network: scale-freeness and evolution PLoS One 3 Suppl. 2 2008 e1690
    • (2008) PLoS One , vol.3 , Issue.SUPPL. 2 , pp. 1690
    • Minnhagen, P.1    Bernhardsson, S.2
  • 27
    • 79960601554 scopus 로고    scopus 로고
    • A brief history of generative models for power law and lognormal distributions
    • Mitzenmacher M. A brief history of generative models for power law and lognormal distributions Internet Math. 1 2003 226 251
    • (2003) Internet Math. , vol.1 , pp. 226-251
    • Mitzenmacher, M.1
  • 29
    • 67149137793 scopus 로고    scopus 로고
    • Detecting hierarchical modularity in biological networks
    • Ravasz E. Detecting hierarchical modularity in biological networks Methods Mol. Biol. 541 2009 145 160
    • (2009) Methods Mol. Biol. , vol.541 , pp. 145-160
    • Ravasz, E.1
  • 30
    • 35449004169 scopus 로고    scopus 로고
    • Self-optimization, community stability, and fluctuations in two individual-based models of biological coevolution
    • DOI 10.1007/s00285-007-0101-y
    • Rikvold P.A. Self-optimization, community stability, and fluctuations in two individual-based models of biological coevolution J. Math. Biol. 55 Suppl. 5-6 2007 653 677 (Pubitemid 47632229)
    • (2007) Journal of Mathematical Biology , vol.55 , Issue.5-6 , pp. 653-677
    • Rikvold, P.A.1
  • 31
    • 32544450571 scopus 로고    scopus 로고
    • Linear systems approach to analysis of complex dynamic behaviours in biochemical networks
    • Schmidt H., and Jacobsen E.W. Linear systems approach to analysis of complex dynamic behaviours in biochemical networks Syst. Biol. (Stevenage). 1 Suppl. 1 2004 149 158
    • (2004) Syst. Biol. (Stevenage). , vol.1 , Issue.SUPPL. 1 , pp. 149-158
    • Schmidt, H.1    Jacobsen, E.W.2
  • 32
    • 79953184678 scopus 로고    scopus 로고
    • Identification of a Saccharomyces cerevisae glucosidase that hydrolyzes flavonoid glucosides
    • Schmidt S., Rainieri S., Witte S., Matern U., and Martens S. Identification of a Saccharomyces cerevisae glucosidase that hydrolyzes flavonoid glucosides Appl. Environ. Microbiol. 77 Suppl. 5 2011 1751 1757
    • (2011) Appl. Environ. Microbiol. , vol.77 , Issue.SUPPL. 5 , pp. 1751-1757
    • Schmidt, S.1    Rainieri, S.2    Witte, S.3    Matern, U.4    Martens, S.5
  • 33
    • 78650944133 scopus 로고    scopus 로고
    • Effects of artesunate on cytokinesis and G2/M cell cycle progression of tumour cells and budding yeast
    • Steinbrck L., Pereira G., and Efferth T. Effects of artesunate on cytokinesis and G2/M cell cycle progression of tumour cells and budding yeast Cancer Genomics Proteomics 7 Suppl. 6 2010 337 346
    • (2010) Cancer Genomics Proteomics , vol.7 , Issue.SUPPL. 6 , pp. 337-346
    • Steinbrck, L.1    Pereira, G.2    Efferth, T.3
  • 34
    • 33747150019 scopus 로고    scopus 로고
    • Complex networks and simple models in biology
    • Stumpf M.P.H., and de Silva E. Complex networks and simple models in biology J. R. Soc. Interface 2 2005 419 430
    • (2005) J. R. Soc. Interface , vol.2 , pp. 419-430
    • Stumpf, M.P.H.1    De Silva, E.2
  • 36
    • 34547125380 scopus 로고    scopus 로고
    • Modeling for evolving biological networks with scale-free connectivity, hierarchical modularity, and disassortativity
    • DOI 10.1016/j.mbs.2006.11.002, PII S0025556406002240
    • Takemoto K., and Oosawa C. Modeling for evolving biological networks with scale-free connectivity, hierarchical modularity, and disassortativity Math. Biosci. 208 Suppl. 2 2007 454 468 (Pubitemid 47101856)
    • (2007) Mathematical Biosciences , vol.208 , Issue.2 , pp. 454-468
    • Takemoto, K.1    Oosawa, C.2
  • 38
    • 33744473304 scopus 로고    scopus 로고
    • How scale-free are biological networks
    • DOI 10.1089/cmb.2006.13.810
    • Wit E., and Khanin R. How scale-free are biological networks J. Comput. Biol. 13 Suppl. 3 2006 810 818 (Pubitemid 43801007)
    • (2006) Journal of Computational Biology , vol.13 , Issue.3 , pp. 810-818
    • Khanin, R.1    Wit, E.2
  • 39
    • 0042093610 scopus 로고    scopus 로고
    • The connectivity structure, giant strong component and centrality of metabolic networks
    • DOI 10.1093/bioinformatics/btg177
    • Zeng A., and Ma H. The connectivity structure, giant strong component and centrality of metabolic networks Bioinformatics 19 Suppl. 11 2003 1423 1430 (Pubitemid 36939822)
    • (2003) Bioinformatics , vol.19 , Issue.11 , pp. 1423-1430
    • Zeng, A.1    Ma, H.2
  • 40
    • 66449122553 scopus 로고    scopus 로고
    • A big world inside small-world networks
    • Zhang J., and Zhang Z. A big world inside small-world networks PLOS One 4 Suppl. 5 2009 e5686
    • (2009) PLOS One , vol.4 , Issue.SUPPL. 5 , pp. 5686
    • Zhang, J.1    Zhang, Z.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.