Savoryellales (Hypocreomycetidae, Sordariomycetes): A novel lineage of aquatic ascomycetes inferred from multiple-gene phylogenies of the genera Ascotaiwania, Ascothailandia, and Savoryella

Mycologia

Volumn 103, Issue 6, 2011, Pages 1351-1371

  Boonyuen, Nattawut ^a,b   Chuaseeharonnachai, Charuwan ^a   Suetrong, Satinee ^a   Veera, Sri indrasutdhi ^a   Sivichai, Somsak ^a   Jones, E B Gareth ^a   Pang, Ka Lai ^c  

^a NATIONAL SCIENCE AND TECHNOLOGY DEVELOPMENT AGENCY   (Thailand)

^b KASETSART UNIVERSITY   (Thailand)

^c NATIONAL TAIWAN OCEAN UNIVERSITY   (Taiwan)

Author keywords

Ascomycota incertae sedis; Fungal systematics; Hypocreomycetidae; Unitunicate ascomycetes

Indexed keywords

COMMON ANCESTRY; DATA SET; FUNGUS; MARINE ECOSYSTEM; PHYLOGENETICS; PHYLOGENY; POLYMERASE CHAIN REACTION; TAXONOMY;

ARTICLE; ASCOMYCETES; CLASSIFICATION; GENETICS; MICROBIOLOGY; PHYLOGENY;

ASCOMYCOTA; PHYLOGENY; WATER MICROBIOLOGY;

EID: 80755124854     PISSN: 00275514     EISSN: 15572536     Source Type: Journal    
DOI: 10.3852/11-102     Document Type: Article

References (60)

1. Abdel-Wahab MA, Jones EBG. 2000. Three new marine ascomycetes from driftwood in Australia sand dunes. Mycoscience 41:379-388, doi:10.1007/BF02463951
2. Barr ME. 1990. Prodromus to nonlichenized, pyrenomycetous members of class Hymenoascomycetes. Mycotaxon 39:43-184.
3. Bunyard BA, Nicholson MS, Royse DJ. 1994. A systematic assessment of Morchella using RFLP analysis of the 28S ribosomal RNA gene. Mycologia 86:762-772, doi:10.2307/3760589
4. Cai L, Hyde KD, Tsui CKM. 2006. Genera of freshwater fungi. Fungal Divers Res Ser 18:1-261.
5. Campbell J, Shearer CA. 2004. Annulusmagnus and Ascitendum, two new genera in the Annulatascaceae. Mycologia 96:821-832, doi:10.2307/3762115
6. Castlebury LA, Rossman AY, Sung GH, Hyten AS, Spatafora JW. 2004. Multigene phylogeny reveals new lineage for Stachybotrys chartarum, the indoor air fungus. Mycol Res 108:864-872, doi:10.1017/S0953756204000607
7. Chang HS, Hsieh YS, Jones EBG, Read SJ, Moss ST. 1998. Aquatic ascomycota: new freshwater species of Ascotaiwania and Savoryella from Taiwan. Mycol Res 102:709-718, doi:10.1017/S0953756297005637
8. Dulymamode R, Cannon P, Hyde KD, Peerally A. 2001. Four new ascomycete species from endemic Panadus of Mauritius. Fungal Divers 8:87-96.
9. Edgar RC. 2004. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 325:1792-1797, doi:10.1093/nar/gkh340
10. Eriksson OE, Hawksworth DL. 1986. An alphabetical list of the generic names of ascomycetes. Syst Ascomycetum 5: 3-111.
11. Eriksson OE, Hawksworth DL.. 1987. Notes on ascomycete systematics. Nos. 225-463. Syst Ascomycetum 6:111-165.
12. Fallah PM, Crane JL, Shearer CA. 1999. Freshwater ascomycetes: two new species of Ascotaiwania from North America. Can J Bot 77:87-92.
13. Farris JS, Källersjö M, Kluge AG. 1995. Testing significance of incongruence. Cladistics 10:315-319, doi:10.1111/j.1096-0031.1994.tb00181.x
14. Felsenstein J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783-791, doi:10.2307/2408678
15. Fröhlich J, Hyde KD. 2000. Palm microfungi. Fungal Divers Res Ser 3:1-393.
16. Hall T. 2006. BioEdit 7.5.0.3. Department of Microbiology, North Carolina State Univ, http://www.mbio.ncsu.edu/BioEdit/Bioedit.html.
17. Hibbett DS, Binder M, Bischoff JF, Blackwell M, Cannon PF, Eriksson OE, Huhndorf S, James T, Kirk PM, Lücking R, Lumbsch HT, Lutzoni F, Matheny PB, McLaughlin DJ, Powell MJ, Redhead S, Schoch CL, Spatafora JW, Stalpers JA, Vilgalys R, Aime MC, Aptroot A, Bauer R, Begerow D, Benny GL, Castlebury LA, Crous PW, Dai YC, Gams W, Geiser DM, Griffith GW, Gueidan C, Hawksworth DL, Hestmark G, Hosaka K, Humber RA, Hyde KD, Ironside JE, Kõljalg U, Kurtzman CP, Larsson K-H, Lichtwardt R, Longcore J, Miadlikowska J, Miller A, Moncalvo J-M, Mozley-Standridge S, Oberwinkler F, Parmasto E, Reeb V, Rogers JD, Roux C, Ryvarden L, Sampaio JP, Schü ßler A, Sugiyama J, Thorn RG, Tibell L, Untereiner WA, Walker C, Wang Z, Weir A, Weiss M, White MM, Winka K, Yao YJ, Zhang N. 2007. A higher level phylogenetic classification of the Fungi. Mycol Res 111:509-547, doi:10.1016/j.mycres.2007.03.004
18. Ho WH, Hyde KD, Hodgkiss IJ. 1997. Ascomycetes from tropical freshwater habitats: the genus Savoryella, with two new species. Mycol Res 101:803-809, doi:10.1017/S0953756296003310
19. Huelsenbeck JP, Ronquist F. 2001. MrBayes: Bayesian inference of phylogeny. Bioinformatics 17:754-755, doi:10.1093/bioinformatics/17.8.754
20. Hyde KD. 1995. Fungi on palms XXV. A new species of Ascotaiwania. Sydowia 47:31-37.
21. Hyde KD., Goh TK. 1999. Fungi on submerged wood from the River Coln, England. Mycol Res 103:1561-1574, doi:10.1017/S0953756299008989
22. Jones EBG, Eaton RA. 1969. Savoryella lignicola gen. et sp. nov. from water-cooling towers. Trans Br Mycol Soc 52: 161-174, doi:10.1016/S0007-1536(69)80169-5
23. Jones EBG, Hyde KA. 1992. Taxonomic studies on Savoryella Jones et Eaton (Ascomycotina). Bot Mar 35:83-91, doi:10.1515/botm.1992.35.2.83
24. Kishino H, Hasegawa M. 1989. Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order of Hominoidea. J Mol Evol 29:170-179, doi:10.1007/BF02100115
25. Kohlmeyer J. 1986. Taxonomic studies of the marine Ascomycotina. In: Moss ST, ed. The biology of marine fungi. Cambridge, UK: Cambridge Univ Press. p 234-257.
26. Kohlmeyer J., Kohlmeyer E. 1979. Marine mycology: the higher fungi. New York: Academic Press. 690 p.
27. Landvik S. 1996. Neolecta, a fruit-body-producing genus of the basal ascomycetes, as shown by SSU and LSU rDNA sequences. Mycol Res 100:199-202, doi:10.1016/S0953-7562(96)80122-5
28. Liu YJ, Whelen S, Hall BD. 1999. Phylogenetic relationships among ascomycetes: evidence from an RNA polymerase II subunit. Mol Biol Evol 16:1799-1808.
29. Nylander JAA. 2004. MrModeltest 2. Program distributed by the author. Evolutionary Biology Centre, Uppsala Univ.
30. Page RMD. 1996. Treeview: an application to display phylogenetic trees on personal computers. Comput Appl Biosci 12:357-358.
31. Pang KL, Abdel-Wahab MA, Sivichai S, El-Sharouney HM, Jones EBG. 2002. Jahnulales (Dothideomycetes, Ascomycota): a new order of lignicolous freshwater ascomycetes. Mycol Res 106:1031-1042, doi:10.1017/S095375620200638X
32. Pinnoi A, Jones EBG, McKenzie EHC, Hyde KD. 2003. Aquatic fungi from peat swamp palms: Unisetosphaeria penguinoides gen. et sp. nov., and three new Dactylaria species. Mycoscience 44:377-382, doi:10.1007/s10267-003-0124-1
33. Pinruan U, Jones EBG, Hyde KD. 2002. Aquatic fungi from peat swamp palms: Jahnula appendiculata sp. nov. Sydowia 54:242-247.
34. Pinruan U, Sakayaroj J, Jones EBG, Hyde KD. 2004a. Flammispora gen. nov., a new freshwater ascomycete from decaying palm leaves. Stud Mycol 50:381-386.
35. Pinruan U, Sakayaroj J, Jones EBG, Hyde KD. 2004b. Aquatic fungi from peat swamp palms: Phruensis brunneispora gen. et sp. nov. and its hyphomycete anamorph. Mycologia 96: 1163-1170, doi:10.2307/3762100
36. Ranghoo VM, Hyde KD. 1998. Ascomycetes from freshwater habitats: Ascolacicola aquatica gen. et sp. nov. and a new species of Ascotaiwania from wood submerged in reservoir in Hong Kong. Mycologia 90:1055-1062, doi:10.2307/3761280
37. Ranghoo VM, Hyde KD., Liew ECY, Spatafora JW. 1999. Family placement of Ascotaiwania and Ascolacicola based on DNA sequences from the large subunit rRNA gene. Fungal Divers 2:159-168.
38. Read SJ, Jones EBG, Moss ST. 1993. Taxonomic studies of marine Ascomycotina: ultrastructure of the asci, asco- spores and appendages of Savoryella species. Can J Bot 71:273-283, doi:10.1139/b93-028
39. Rehner S. 2001. Primers for elongation factor 1-á (EF1-á). http://ocid.NACSE.ORG/research/deephyphae/EF1primer.pdf.
40. Sakayaroj J, Jones EBG, Chatmala I, Phongpaichit S. 2004. Marine fungi. In: Jones EBG, Tanticharoen M, Hyde KD, eds. Thai fungal diversity. Thailand: BIOTEC. p 107-117.
41. Sakayaroj J, Pang LK, Jones EBG, Vrijmoed LLP, Abdel-Wahab MA, Phongpaichit S. 2005. A systematic reassessment of the marine ascomycetes Torpedospora and Swampomyces. Bot Mar 48:395-406, doi:10.1515/BOT.2005.053
42. Schoch CL, Sung G-H, Kohlmeyer BV, Spatafora JW. 2007. Marine fungal lineages in the Hypocreomycetidae. Mycol Res 111:154-162, doi:10.1016/j.mycres.2006. 10.005
43. Sivanesan A, Chang HS. 1992. Ascotaiwania, a new amphisphaeriaceous ascomycete genus on wood from Taiwan. Mycol Res 96:481-484, doi:10.1016/S0953-7562(09)81094-0
44. Sivichai S, Boonyene N. 2004. Freshwater fungi. In: Jones EBG, Tanticharoen M, Hyde KD, eds. Thai fungal diversity. Thailand: BIOTEC. p 95-106.
45. Sivichai S, Hywel-Jones NL, Jones EBG. 1998. Lignicolous freshwater Ascomycota from Thailand 1. Ascotaiwania sawada and its anamorph state Monotosporella. Mycoscience 39:307-311, doi:10.1007/BF02464013
46. Sivichai S, Jones EBG, Hywel-Jones NL. 2002. Fungal colonisation of wood in a freshwater stream at Tad Ta Phu, Khao Yai National Park, Thailand. Fungal Divers 10: 113-129.
47. Sivichai S, Jones EBG. 2003. Teleomorphic-anamorphic connections of freshwater fungi. Fungal Divers Res Ser 10:259-272.
48. Spatafora JW, Sung GH, Johnson D, Hesse C, O'Rourke B, Serdani M, Spotts R, Lutzoni F, Hofstetter V, Miadlikowska J, Reeb V, Gueidan C, Fraker E, Lumbsch T, Lücking R, Schmitt I, Hosaka K, Aptroot A, Roux C, Miller AN, Geiser DM, Hafellner J, Hestmark G, Arnold AE, Bü del B, Rauhut A, Hewitt D, Untereiner WA, Cole MS, Scheidegger C, Schultz M, Sipman H, Schoch CL. 2006. Five-gene phylogeny of Pezizomycotina. Mycologia 98:1018-1028, doi:10.3852/mycologia.98.6.1018
49. Sri-indrasutdhi V, Boonyuen N, Suetrong S, Chuaseeharonnachai C, Sivichai S, Jones EBG. 2010. Woodinhabiting freshwater fungi from Thailand: Ascothailandia gen. et sp. nov., Canalisporium sp. nov. with a key to Canalisporium species (Sordariomycetes Ascomycota). Mycoscience 51:411-420, doi:10.1007/s10267-010-0055-6
50. Stamatakis A. 2006. RAxML-VI-HPC: maximum likelihoodbased phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22:2688-2690, doi:10.1093/bioinformatics/btl446
51. Swofford DL. 2002. PAUP*4b10: phylogenetic analysis using parsimony (*and other methods). Sunderland, Massachusetts: Sinauer Associates.
52. Tang AMC, Jeewon R, Hyde KD. 2007. Phylogenetic utility of protein (RPB2, b-tubulin) and ribosomal (LSU, SSU) gene sequences in the systematics of Sordariomycetes (Ascomycota, Fungi). Antonie van Leeuwenhoek 91:327-349, doi:10.1007/s10482-006-9120-8
53. Thompson JD, Higgins DG, Gibson TJ. 1994. Clustal W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position- specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673-4680, doi:10.1093/nar/22.22.4673
54. Tigano-Milani MS, Samson RA, Martins I, Sobral BWS. 1995. DNA markers for differentiating isolates of Paecilomyces lilacinus. Microbiology 141:239-245, doi:10.1099/00221287-141-1-239
55. Tsui CKM, Berbee ML. 2006. Phylogenetic relationships and convergence of helicosporous fungi inferred from ribosomal DNA sequences. Mol Phylogenet Evol 39: 587-597, doi:10.1016/j.ympev.2006.01.025
56. Tsui CKM, Hyde KD. 2003. Freshwater mycology. Fungal Divers Res Ser 10:1-350.
57. Vijaykrishna D, Jeewon R, Hyde KD. 2006. Molecular taxonomy, origins and evolution of freshwater ascomycetes. Fungal Divers 23:351-390.
58. White TJ, Bruns T, Lee S, Taylor J. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ, eds. PCR protocols: a guide to methods and applications. San Diego: Academic Press. p 315-322.
59. Wong MKM, Hyde KD. 2001. Fungi on grasses: new species of Ascotaiwania, Diaporthe and Oxydothis (Ascomycetes). Cryptogamie 22:19-28, doi:10.1016/S0181-1584(01)01055-7
60. Zhang N, Castlebury LA, Miller AN, Huhndorf SM, Schoch CL, Seifert KA, Rossman AY, Rogers JD, Kohlmeyer J, Volkmann-Kohlmeyer B, Sung GH. 2006. An overview of the systematics of the Sordariomycetes based on a four-gene phylogeny. Mycologia 98:1076-1087, doi:10.3852/mycologia.98.6.1076